Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_004302 3,556 +GT coding (316/798 nt) r1tp05 → ORF5

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0043023,5541.G91.7% 1300.3 / 67.8 494coding (314/798 nt)r1tp05ORF5
Reads supporting (aligned to +/- strand):  ref base . (41/0);  new base G (447/5);  total (489/5)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*NC_0043023,5542.T91.7% 1236.2 / 72.1 494coding (314/798 nt)r1tp05ORF5
Reads supporting (aligned to +/- strand):  ref base . (41/0);  new base T (448/5);  total (489/5)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 511 total aligned reads displayed.

AGTAAATTGCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCG‑‑AAGCACG‑‑GA‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTACACAGCTA  >  NC_004302/3481‑3627
                                                                                 ||                                                                         
  gcaaTTGCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GA‑‑Gt                                                                         >  1:15873031/3‑75 (MQ=255)
   aaaTTGCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GA‑‑Gtg                                                                        >  1:4285089/1‑74 (MQ=255)
      gggCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GA‑‑Gtgtac                                                                     >  1:3694653/3‑71 (MQ=255)
      aggCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GA‑‑Gtgtac                                                                     >  1:8970028/3‑71 (MQ=255)
              cccTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGa                                                               >  1:6912111/3‑75 (MQ=255)
               acttgatcATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGAt                                                              >  1:6774586/8‑75 (MQ=255)
               acttgatcATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGAt                                                              >  1:15269907/8‑75 (MQ=255)
                tatcagcATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATg                                                             >  1:8469430/7‑75 (MQ=255)
                cagAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATg                                                             >  1:7377161/3‑75 (MQ=255)
                  tatccATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCg                                                           >  1:7518226/4‑75 (MQ=255)
                  taGCCATTAGAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCg                                                           >  1:11016623/2‑75 (MQ=255)
                    gttgccacAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGaa                                                         >  1:6590411/8‑75 (MQ=255)
                     ttggtagaGGAGTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAg                                                        >  1:9896263/8‑75 (MQ=255)
                     gagtacgaGGATGG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAg                                                        >  1:13114821/8‑75 (MQ=255)
                     atgaaataGGATTG‑AGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAg                                                        >  1:6453336/8‑75 (MQ=255)
                      gacaaaaGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGc                                                       >  1:7854797/7‑75 (MQ=255)
                      agttataGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGc                                                       >  1:576981/7‑75 (MQ=255)
                       cagggtggATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCt                                                      >  1:1655901/7‑75 (MQ=255)
                        attcatcaTTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCtt                                                     >  1:10778875/8‑75 (MQ=255)
                         tggattgttG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTg                                                    >  1:16744168/8‑75 (MQ=255)
                         gaaaagtttG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTg                                                    >  1:13708161/8‑75 (MQ=255)
                         aagttttttG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTg                                                    >  1:7066275/8‑75 (MQ=255)
                          agatagatG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTga                                                   >  1:12222861/8‑75 (MQ=255)
                          agaGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTga                                                   >  1:12342644/3‑75 (MQ=255)
                           ttttatgg‑ggTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCTAAGCTTgaa                                                  >  1:16185678/8‑75 (MQ=255)
                           tattgagg‑ggTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:7943210/8‑75 (MQ=255)
                           ggggATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:1624811/3‑75 (MQ=255)
                           gcgcaggg‑ggTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:2979278/8‑75 (MQ=255)
                           gaagagag‑ggTATATGAAGAAGTAC‑‑TCCCAACAATCAGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:1746427/8‑75 (MQ=255)
                           ctataTTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:4480115/5‑75 (MQ=255)
                           catgatag‑ggTAGATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:12053415/8‑75 (MQ=255)
                            tggATTGTGGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaa                                                  >  1:16863827/2‑75 (MQ=255)
                            atccttG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaag                                                 >  1:5622741/5‑75 (MQ=255)
                              gtatG‑GGTATTTGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaagaa                                               >  1:12010837/4‑75 (MQ=255)
                              gacgtgagTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaaga                                                >  1:3859871/8‑75 (MQ=255)
                               gttcgagTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaagaa                                               >  1:14978990/7‑75 (MQ=255)
                               atcg‑ggTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGaagaag                                              >  1:8821399/4‑75 (MQ=255)
                               actgtcttataTGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaagaa                                               >  1:17361081/8‑75 (MQ=255)
                               aatagtttataTGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTgaagaa                                               >  1:15526130/8‑75 (MQ=255)
                                attaaatataTGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GACTGTACATGACGGATGCGAAGCTTGaagaag                                              >  1:9694782/7‑75 (MQ=255)
                                aggacgTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCCAAGCTAGaagaag                                              >  1:12629021/6‑75 (MQ=255)
                                 ggctatttatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGt                                             >  1:17107726/8‑75 (MQ=255)
                                 cagaatataGGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGt                                             >  1:12484160/6‑75 (MQ=255)
                                  tcggTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTa                                            >  1:14857009/3‑75 (MQ=255)
                                   ttacgcgtGAAG‑AGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACt                                          >  1:10931004/8‑75 (MQ=255)
                                   agagatatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTAc                                           >  1:17613526/5‑75 (MQ=255)
                                   aattataTGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTAc                                           >  1:14679195/4‑75 (MQ=255)
                                    gttgtatGAGGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACt                                          >  1:3074938/5‑75 (MQ=255)
                                    agcatatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACt                                          >  1:11422402/4‑75 (MQ=255)
                                     tgggtgtaagaagTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTg                                         >  1:1604449/8‑75 (MQ=255)
                                     ggtacagaagaaGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTg                                         >  1:14000701/7‑75 (MQ=255)
                                     ggccgtGAATAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTg                                         >  1:15187521/6‑75 (MQ=255)
                                     gaagatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTg                                         >  1:17260488/5‑75 (MQ=255)
                                     gTATATGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTg                                         >  1:13240297/1‑75 (MQ=255)
                                       tgaagatgaagTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCt                                       >  1:116116/8‑75 (MQ=255)
                                       atatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCt                                       >  1:8611820/1‑75 (MQ=255)
                                       atatGAAGAAGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAACTTGaagaagatcggaa                                       >  1:11360477/1‑68 (MQ=255)
                                       acaagtggaagTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAGGAAGTACTGCt                                       >  1:7713785/8‑75 (MQ=255)
                                       aaggtaagatgTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCt                                       >  1:4645088/6‑75 (MQ=255)
                                        tttGAAGAAGT‑‑‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGCACTGCTTaa                                    >  1:12788081/3‑75 (MQ=255)
                                        ttaagcaaagTTC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCtt                                      >  1:11786353/8‑75 (MQ=255)
                                        aaatggtaagTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCtt                                      >  1:4019160/8‑75 (MQ=255)
                                         aggaagaaGTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACTGATGCGAAGCATGAAGAAGTACTGCTTa                                     >  1:10629451/3‑75 (MQ=255)
                                          tgtagaagTCC‑‑TCCCAACAATCCGAAAAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTa                                     >  1:1226715/4‑75 (MQ=255)
                                          tcatcttgTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTaa                                    >  1:3534311/8‑75 (MQ=255)
                                          agaagaaGATC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTaa                                    >  1:9351820/2‑75 (MQ=255)
                                           ttgtaagTGC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAAt                                   >  1:536359/5‑75 (MQ=255)
                                            cagaagTCCTTTCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTaa                                    >  1:10057518/2‑75 (MQ=255)
                                            caagtgTCC‑‑TCCCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATc                                  >  1:5522520/6‑75 (MQ=255)
                                               gattcc‑‑tccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAg                               >  1:13513249/4‑75 (MQ=255)
                                                tggggaatccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCa                                >  1:10274710/8‑75 (MQ=255)
                                                ggaattgtccCCACAATCCGA‑AAGCACGTAGT‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTAAATCCa                                >  1:9578323/8‑75 (MQ=255)
                                                gaagttttccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCa                                >  1:491289/8‑75 (MQ=255)
                                                gaagttttccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCa                                >  1:15632875/8‑75 (MQ=255)
                                                agagacgtccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCa                                >  1:12896581/8‑75 (MQ=255)
                                                    aattccCAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATa                            >  1:11290879/4‑75 (MQ=255)
                                                       gtgaaggaaTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATacac                         >  1:14574720/8‑75 (MQ=255)
                                                       agttatgaaTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATacac                         >  1:7216857/8‑75 (MQ=255)
                                                        tggtacaaTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACt                        >  1:6038954/5‑75 (MQ=255)
                                                         gtaaaaaTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTc                       >  1:6326319/6‑75 (MQ=255)
                                                         ccAACAATCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTc                       >  1:13610882/1‑75 (MQ=255)
                                                          actagaTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCa                      >  1:15216101/6‑75 (MQ=255)
                                                           gttgattcG‑‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCAtt                    >  1:14401502/8‑75 (MQ=255)
                                                               atagcgaaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTaa                  >  1:3422431/8‑75 (MQ=255)
                                                               atacgttaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTaa                  >  1:3340875/8‑75 (MQ=255)
                                                               aTCCGA‑AAGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc                 >  1:15412135/1‑75 (MQ=255)
                                                                ttgacacaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc                 >  1:4106010/8‑75 (MQ=255)
                                                                ttaaatgaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCTTTAAc                 >  1:17561090/8‑75 (MQ=255)
                                                                gtactaaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc                 >  1:5232343/7‑75 (MQ=255)
                                                                ggttcaaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATTCACTCATTAAc                 >  1:13836616/7‑75 (MQ=255)
                                                                  agaaaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCt               >  1:5881568/5‑75 (MQ=255)
                                                                   gcaggcaaCG‑‑GT‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGc            >  1:2077922/8‑75 (MQ=255)
                                                                    gaaaGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTg             >  1:2283946/3‑75 (MQ=255)
                                                                      ccaggag‑‑gA‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTac         >  1:8280247/7‑75 (MQ=255)
                                                                       aGCACG‑‑GAGTGTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGcca          >  1:923355/1‑73 (MQ=255)
                                                                        gtctggcgA‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTac         >  1:8068814/8‑75 (MQ=255)
                                                                        ggtatgtgA‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTac         >  1:16129197/8‑75 (MQ=255)
                                                                         tgtcgata‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTaca        >  1:2737876/8‑75 (MQ=255)
                                                                         taggttta‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTaca        >  1:1879865/8‑75 (MQ=255)
                                                                         cagaggaa‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTaca        >  1:2557584/8‑75 (MQ=255)
                                                                                 ||                                                                         
AGTAAATTGCCAAGTGCTGAGCCATTTCAGGATTG‑GGTATATGAAGAAGTCC‑‑TCCCAACAATCCG‑‑AAGCACG‑‑GA‑‑GTACATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTACACAGCTA  >  NC_004302/3481‑3627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑