| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_004302 | 8,712 | (TGAATT)3→2 | coding (21‑26/396 nt) | r1tp14 → | ORF14 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 8,696 | 0 | A | . | 100.0% | 20.9 / NA | 8 | coding (159/165 nt) coding (5/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/1); total (7/1) | |||||||||||
| * | NC_004302 | 8,697 | 0 | A | . | 100.0% | 20.9 / NA | 8 | coding (160/165 nt) coding (6/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/1); total (7/1) | |||||||||||
| * | NC_004302 | 8,698 | 0 | T | . | 100.0% | 20.9 / NA | 8 | coding (161/165 nt) coding (7/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/1); total (7/1) | |||||||||||
| * | NC_004302 | 8,699 | 0 | T | . | 100.0% | 20.9 / NA | 8 | coding (162/165 nt) coding (8/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/1); total (7/1) | |||||||||||
| * | NC_004302 | 8,700 | 0 | T | . | 100.0% | 20.9 / NA | 8 | coding (163/165 nt) coding (9/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/1); total (7/1) | |||||||||||
| * | NC_004302 | 8,701 | 0 | G | . | 100.0% | 20.9 / NA | 8 | coding (164/165 nt) coding (10/396 nt) | r1tp13 r1tp14 | ORF13 ORF14 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (7/1); total (7/1) | |||||||||||
TCATGAGATTATTTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAAATTTGAATTTGAATTTGAATTGGATAAAATGCCAACTACTCAGCAGCAAAAAG > NC_004302/8624‑8749 |||||| gatacgaattattTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaat > 1:14502389/8‑75 (MQ=255)gacacggaTTATTTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaat > 1:12096469/7‑75 (MQ=255) taTGAGATTTTTTTTATTCTGAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaatt > 1:8423349/2‑75 (MQ=255) aattattattTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaatttg > 1:14427965/5‑75 (MQ=255) agaatattatTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaatttgaatttgaa > 1:14321315/5‑75 (MQ=255) tagtATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaatttgaatttgaat > 1:15346707/4‑75 (MQ=255) ttgggcTTAAGCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAaatttgaatttaaattg > 1:4806786/6‑74 (MQ=255) aatgatgtGCAATTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTcag > 1:2980840/8‑75 (MQ=255) aagtgcaaaTTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTcagcag > 1:4237915/8‑75 (MQ=255) aagagagaaTTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTcagcag > 1:11418715/8‑75 (MQ=255) aagatagaTTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTCagcagc > 1:12536595/8‑75 (MQ=255) gtttaaaTTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTTAgcagca > 1:4779070/6‑75 (MQ=255) aatagtaTTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTCAgcagca > 1:14552980/7‑75 (MQ=255) ggCAATTGTTAGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTcagcatgcta < 1:8324363/74‑6 (MQ=255) acagtggaGATTTGGAGAAGCGAGTGA‑‑‑‑‑‑AATTTGAATTTGAATTGGATAAAATGCCAACTACTCAGCAGCAAAAAg > 1:11971658/8‑75 (MQ=255) |||||| TCATGAGATTATTTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAAATTTGAATTTGAATTTGAATTGGATAAAATGCCAACTACTCAGCAGCAAAAAG > NC_004302/8624‑8749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |