mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 2,843 | 0 | C | G | 46.7% | 2.7 / 29.0 | 40 | intergenic (‑86/‑144) | rro/tec | Repressor protein/tec |
| * | NC_004302 | 24,164 | 1 | . | T | 36.7% | 65.0 / 72.2 | 79 | intergenic (+54/‑165) | r1tp41/r1tp42 | ORF41/ORF42 |
| * | NC_004302 | 1,914 | 0 | T | C | 23.3% | 198.9 / 69.9 | 235 | intergenic (‑54/+7) | r1tp02/rro | ORF2/Repressor protein |
| * | NC_004302 | 2,995 | 1 | . | A | 21.6% | 302.4 / 69.6 | 162 | coding (9/243 nt) | tec | tec |
| * | NC_004302 | 15,047 | 1 | . | A | 21.0% | 485.9 / 106.2 | 252 | intergenic (+140/‑7) | r1tp26/r1tp27 | HNH endonuclease/Structural protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | 32569 = | 3957 (6.740) | 359 (0.660) | 8/138 | 0.4 | 10.0% | coding (524/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase |
| ? | NC_004302 | 32599 = | 2770 (5.060) | coding (554/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase | |||||