mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 336,797 | 1 bp→TTT | noncoding (27/1558 nt) | C7Y58_01750 ← | 16S ribosomal RNA |
| RA | 516,032 | G→A | G86D (GGT→GAT) | C7Y58_02640 → | transcriptional repressor |
| RA | 693,938 | C→T | pseudogene (890/1244 nt) | C7Y58_03400 ← | IS3 family transposase |
| RA | 693,972 | G→A | pseudogene (856/1244 nt) | C7Y58_03400 ← | IS3 family transposase |
| RA | 761,017 | A→G | I464M (ATA→ATG) | C7Y58_03755 → | hemolysin activator protein precursor |
| RA | 761,062 | A→G | K479K (AAA→AAG) | C7Y58_03755 → | hemolysin activator protein precursor |
| RA | 875,381 | A→G | K85E (AAA→GAA) | C7Y58_04335 → | autotransporter domain‑containing protein |
| RA | 880,783 | A→G | K1885K (AAA→AAG) | C7Y58_04335 → | autotransporter domain‑containing protein |
| RA | 880,795 | A→T | K1889N (AAA→AAT) | C7Y58_04335 → | autotransporter domain‑containing protein |
| RA | 880,807 | T→A | H1893Q (CAT→CAA) | C7Y58_04335 → | autotransporter domain‑containing protein |
| RA | 880,813 | A→G | L1895L (TTA→TTG) | C7Y58_04335 → | autotransporter domain‑containing protein |
| RA | 901,169 | C→T | pseudogene (478/1276 nt) | C7Y58_04430 ← | ISL3 family transposase |
| RA | 1,262,493 | 2 bp→TG | pseudogene (1086‑1087/1276 nt) | C7Y58_06050 → | ISL3 family transposase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | = 332833 | NA (NA) | 28 (0.210) | 20/426 | 1.7 | NA | noncoding (2300/2928 nt) | C7Y58_01745 | 23S ribosomal RNA |
| ? | CP028101 | = 332842 | NA (NA) | noncoding (2291/2928 nt) | C7Y58_01745 | 23S ribosomal RNA | |||||
| * | ? | CP028101 | = 493674 | NA (NA) | 144 (1.360) +54 bp |
71/334 | 0.2 | NA | coding (429/456 nt) | C7Y58_02580 | OmpA family protein |
| ? | CP028101 | 493722 = | NA (NA) | coding (1/7146 nt) | C7Y58_02585 | autotransporter domain‑containing protein | |||||
| * | ? | CP028101 | 900717 = | NA (NA) | 126 (0.940) +GATAAAGTGG |
79/422 | 0.2 | NA | pseudogene (930/1276 nt) | C7Y58_04430 | ISL3 family transposase |
| ? | CP028101 | = 900717 | NA (NA) | pseudogene (930/1276 nt) | C7Y58_04430 | ISL3 family transposase | |||||
| * | ? | CP028101 | 1012873 = | 90 (0.640) | 39 (0.280) | 34/438 | 1.1 | 29.6% | coding (1370/1857 nt) | C7Y58_04950 | DUF2194 domain‑containing protein |
| ? | CP028101 | = 1012900 | 96 (0.690) | coding (1397/1857 nt) | C7Y58_04950 | DUF2194 domain‑containing protein | |||||