| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | 32569 = | 3957 (6.740) | 359 (0.660) | 8/138 | 0.4 | 10.0% | coding (524/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase |
| ? | NC_004302 | 32599 = | 2770 (5.060) | coding (554/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 4508 total aligned reads displayed.
TTACTCTTATTTAACACGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATGGAGGAAAAA > NC_004302/32495‑32642 | catggaaTTTATCACGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCAt > 1:12392638/7‑75 (MQ=255) acaggtAACACGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGaa > 1:7072866/6‑75 (MQ=255) ttaatcacGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGCAAAACGGTATTG‑GTGG‑GGCATCGAAAt > 1:9026345/6‑75 (MQ=255) gcaagcacGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTAATG‑GTGC‑GGCATCGAAATc > 1:11360471/6‑75 (MQ=255) cattttccGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATc > 1:4295159/8‑75 (MQ=255) aatatgacGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATc > 1:1442843/7‑75 (MQ=255) gcaaaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaatctctccac > 1:12713696‑M1/68‑68 (MQ=255) ctagcgtgCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCt > 1:9650338/8‑75 (MQ=255) caaaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaatcaacgtgag > 1:13592374‑M1/67‑68 (MQ=255) aagcacGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑a > 1:10134278/4‑75 (MQ=255) aaaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaatcatatcacta > 1:690935‑M1/66‑68 (MQ=255) ctagataTTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aat > 1:6764026/7‑75 (MQ=255) aggaataTTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aat > 1:5169942/7‑75 (MQ=255) aaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaatcatctcgtagt > 1:17747344‑M1/65‑68 (MQ=255) aaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaatcatcacacccc > 1:307639‑M1/65‑68 (MQ=255) aaaataagataagtcatttctttttcctccatgttaggtgtgtagttgattgcgtgtgttgaaacatctttactc > 1:9364277‑M1/65‑68 (MQ=255) tgggaaTTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aatc > 1:872725/6‑75 (MQ=255) tagatcgtGGTATTGGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aatc > 1:12981389/8‑75 (MQ=255) gtgtgaTTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aatc > 1:5340149/6‑75 (MQ=255) aataagataagtcatttctttttcctccatgtagggtgtgtagttgattgcgtgtgttgaatcatcgaacaccat > 1:10658602‑M1/63‑69 (MQ=255) cttttcggTAATAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aatcaa > 1:15051574/7‑75 (MQ=255) acgaTTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTA‑GTGG‑GGCATCGAAATCT‑aatcaa > 1:10005240/4‑75 (MQ=255) gatgtgatATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑aatcaat > 1:3846374/8‑75 (MQ=255) ttcggTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCt > 1:6302972/4‑75 (MQ=255) gacggTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCt > 1:15729669/4‑75 (MQ=255) ttgcgaatAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCGTCGAAATCT‑AATCAATCta > 1:4899264/8‑75 (MQ=255) caggaTTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCtaa > 1:2101667/5‑75 (MQ=255) taaagaaGCAATGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCtaat > 1:3588023/7‑75 (MQ=255) ctataaaGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCtaat > 1:10329309/7‑75 (MQ=255) tgtaattaaaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCtaataa > 1:10487395/8‑75 (MQ=255) ggtttgaaaaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCtaataa > 1:9842796/8‑75 (MQ=255) tgctgttaaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAAc > 1:5684005/8‑75 (MQ=255) taaattgaaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAAc > 1:13284664/8‑75 (MQ=255) ttaaaaaaGACCAACTCGCCAAAGACTTAGCAAAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAAc > 1:7245949/6‑75 (MQ=255) aaggCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACg > 1:2435412/4‑75 (MQ=255) actagaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACgat > 1:3717199/6‑75 (MQ=255) agatgACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACgatga > 1:12205524/5‑75 (MQ=255) agaaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACgatga > 1:3245287/3‑75 (MQ=255) agaGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACgatgat > 1:8588397/3‑75 (MQ=255) aataaaaaCTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGAtt > 1:12000538/7‑75 (MQ=255) tcaCCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTc > 1:14580345/3‑75 (MQ=255) gttgataCTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTc > 1:3981188/7‑75 (MQ=255) atcAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCaa > 1:3389689/3‑75 (MQ=255) aggcaCTCGCCAAAGACTTAGC‑AAACTGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCaa > 1:17231447/5‑75 (MQ=255) atgaCTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAac > 1:1559460/4‑75 (MQ=255) tgttcgcccAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAaca > 1:952586/8‑75 (MQ=255) atgttCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCacca > 1:17594161/5‑72 (MQ=255) taCTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAacac > 1:5522689/2‑75 (MQ=255) gtagtttgACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGc > 1:16942364/8‑75 (MQ=255) atgatgcgACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGc > 1:1409352/8‑75 (MQ=255) aatggaaGATTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGc > 1:12848029/6‑75 (MQ=255) aatataCTTTGC‑AAACGATATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAAt > 1:16283500/6‑75 (MQ=255) aagggggttAGT‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAAt > 1:4738669/8‑75 (MQ=255) atgagactAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATc > 1:5987223/8‑75 (MQ=255) agacttttAGA‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATc > 1:11863082/7‑75 (MQ=255) gggacttc‑AAATGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAAc > 1:17085620/8‑75 (MQ=255) aagatgcaaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTa > 1:2271959/8‑75 (MQ=255) tagcagtaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTac > 1:13938830/8‑75 (MQ=255) cgggattaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTac > 1:12570420/8‑75 (MQ=255) tataaaaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAAACAACTaca > 1:5022162/5‑75 (MQ=255) aaattgccGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACGaca > 1:15915280/8‑75 (MQ=255) ttaaaaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacac > 1:10945747/4‑75 (MQ=255) tgaggaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACAacac > 1:1660982/6‑75 (MQ=255) ctgaattggTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacac > 1:13430848/8‑75 (MQ=255) gaaaaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATCAATCAACACACGCAATCAACTacaca > 1:6475930/3‑75 (MQ=255) aatgagagTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacaca > 1:10782271/8‑75 (MQ=255) tattgattATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacacac > 1:8107852/8‑75 (MQ=255) tagaCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacacac > 1:4165083/4‑75 (MQ=255) caatgggTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacacac > 1:14776848/6‑75 (MQ=255) atgaagTATAG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACAcc > 1:8281003/6‑75 (MQ=255) agcgggtgtgagttgaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTacacac < 1:8462424‑M1/57‑1 (MQ=255) gtgccaTTG‑TTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTa > 1:6143911/6‑75 (MQ=255) aCGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTa > 1:11689639/1‑75 (MQ=255) taatagtgtggtgaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACaccc < 1:15405728‑M1/59‑2 (MQ=255) ggattgggtgttgaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCt < 1:14282159‑M1/59‑1 (MQ=255) gatgcttgttttgaatCATCGAAATCT‑A‑TCAATCTAATAACGATGATTCAACACACGCAATCAACTACAcaccaa < 1:5826807‑M1/59‑3 (MQ=255) cagTATTGAGTGG‑AGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTa > 1:772859/3‑75 (MQ=255) ttgaagg‑gtgg‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAAc > 1:15251321/7‑75 (MQ=255) gtggttgtgtagaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTa < 1:4462731‑M1/60‑1 (MQ=255) gctATTG‑GTGGTGGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACAccaaa > 1:7385519/3‑72 (MQ=255) ctagttG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAAc > 1:291648/5‑75 (MQ=255) agcatagtgctgaatCATCGAAATCT‑AATCTATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTa < 1:9195092‑M1/60‑1 (MQ=255) gataggtgtgg‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAAc > 1:1962878/8‑75 (MQ=255) tcttttatgg‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACa > 1:7926453/8‑75 (MQ=255) atatg‑gtgt‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTTCA‑ACCTAACaga > 1:14911587/4‑73 (MQ=255) tgaatgagg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACAt > 1:11238091/8‑75 (MQ=255) gtggttggg‑ggTATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACAt > 1:16081856/8‑75 (MQ=255) ggtgagagg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACAt > 1:1744883/8‑75 (MQ=255) ggcttgcgg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAGCAt > 1:13124006/8‑75 (MQ=255) ctggtgtttaacCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAacc < 1:11073653‑M1/63‑2 (MQ=255) cgattttgg‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACAt > 1:16429901/7‑75 (MQ=255) aTTG‑GTGGCGGCATCGAAATCTAAATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTacca > 1:2793007/1‑72 (MQ=255) tgaatatg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATg > 1:6642822/8‑75 (MQ=255) gccctatgaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACAt < 1:8862346‑M1/64‑1 (MQ=255) ttgactgaagCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATg < 1:11524633‑M1/65‑1 (MQ=255) attggcg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATgg > 1:2612040/7‑75 (MQ=255) atggctgaagCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATg < 1:753147‑M1/65‑1 (MQ=255) ggcattcggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATgg > 1:16744159/8‑75 (MQ=255) cacggg‑ggCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATgga > 1:4575269/5‑75 (MQ=255) gttcaatCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATggag < 1:13782453‑M1/68‑1 (MQ=255) | TTACTCTTATTTAACACGCATTGGTATTAGCAAAGACCAACTCGCCAAAGACTTAGC‑AAACGGTATTG‑GTGG‑GGCATCGAAATCT‑AATCAATCTAATAACGATGATTCAACACACGCAATCAACTACACACCTAACATGGAGGAAAAA > NC_004302/32495‑32642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |