| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 2,995 | 1 | . | A | 21.6% | 302.4 / 69.6 | 162 | coding (9/243 nt) | tec | tec |
| Reads supporting (aligned to +/- strand): ref base . (126/1); new base A (35/0); total (161/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 184 total aligned reads displayed.
TCCACCGCGATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCAAAAAA > NC_004302/2922‑3066 | gataacgcgATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑Ag‑ag‑‑‑a > 1:15662810/6‑75 (MQ=255) tgaCCGCGATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑aa > 1:6291202/3‑75 (MQ=255) tccatttgATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑GAAAAGGAGCCAGTATG‑GC‑‑Ag‑ag‑‑‑a > 1:8393458/8‑75 (MQ=255) tccGCGATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑aaaa > 1:2408321/2‑75 (MQ=255) cacgcgATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑Aa‑ag‑‑‑atcg > 1:2487423/3‑72 (MQ=255) cgtgctggTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑aaaaa > 1:1622445/8‑75 (MQ=255) taaaTGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑aaaaaaa > 1:11358873/4‑75 (MQ=255) gtgATGTAATTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑aaaaaaa > 1:310220/3‑75 (MQ=255) agctGTAAGGAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAAc > 1:8802080/4‑75 (MQ=255) tgggggTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTa > 1:12500094/6‑75 (MQ=255) atcaagttttGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGcc > 1:12294813/8‑75 (MQ=255) atacaGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCa > 1:4698596/5‑75 (MQ=255) cataGTTTGG‑CTAAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCa > 1:7328631/4‑75 (MQ=255) tgaGTTTGGTC‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCAc > 1:7067224/3‑75 (MQ=255) tctattggg‑C‑AAATAAAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCAc > 1:2257715/8‑75 (MQ=255) cAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGTGccgct < 1:7894611/75‑4 (MQ=255) ggagcttg‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACt > 1:1100071/8‑75 (MQ=255) tgtatctc‑AAAA‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAg > 1:14011480/8‑75 (MQ=255) cggggataaT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGAt > 1:1433662/8‑75 (MQ=255) tg‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAg > 1:2371007/2‑75 (MQ=255) ttccatgCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGttatta > 1:14325080/7‑75 (MQ=255) gaatggCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAg > 1:10778599/6‑75 (MQ=255) tataGCCCCTAGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGAAAAAAAAAACTTATGAGCCACTAGATGAGttat > 1:16460687/4‑75 (MQ=255) tatcccc‑AGA‑‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGAct > 1:8414791/4‑75 (MQ=255) gtttccc‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGAct > 1:7199816/5‑75 (MQ=255) ttgtcc‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActc > 1:13080769/5‑75 (MQ=255) tgCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActc > 1:1438656/2‑75 (MQ=255) gttgcc‑AGAGAG‑GG‑CA‑A‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGAc > 1:9529622/5‑75 (MQ=255) cctccctgag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActc > 1:11480736/8‑75 (MQ=255) acccc‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActgt > 1:13596190/2‑73 (MQ=255) tttcccaag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActct > 1:5562684/8‑75 (MQ=255) tatatggag‑G‑TG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActc > 1:44602/7‑75 (MQ=255) gtgc‑AGAG‑GTGG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActct > 1:14815734/4‑75 (MQ=255) ggcacaaag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActct > 1:13835850/8‑75 (MQ=255) cccctagag‑G‑GT‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActct > 1:9802169/6‑75 (MQ=255) tcactgtg‑g‑gg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCtt > 1:17691232/8‑75 (MQ=255) agtgctgg‑g‑gg‑CA‑G‑GAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCtt > 1:3524760/8‑75 (MQ=255) ttaatag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:4930599/6‑75 (MQ=255) gtggaag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGAA‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActct > 1:15270661/6‑75 (MQ=255) gggagag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:10136136/4‑75 (MQ=255) gcactag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCtt > 1:10497308/6‑75 (MQ=255) ctttcag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:16555712/6‑75 (MQ=255) agggaag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:6568894/6‑75 (MQ=255) tgttgg‑g‑gg‑TA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑Ca > 1:10667226/6‑75 (MQ=255) gttgccag‑gg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:14746483/8‑75 (MQ=255) gcggag‑G‑GGCCA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:15032963/4‑75 (MQ=255) ctgaag‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGActctcca > 1:592333/5‑72 (MQ=255) gagag‑G‑GG‑CATA‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑Ca > 1:3582261/2‑75 (MQ=255) ggtgcccgg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AGAAA‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑c > 1:7832040/8‑75 (MQ=255) aagaggagg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑Ca > 1:12165504/8‑75 (MQ=255) ttcatcgg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑Ca > 1:9667742/7‑75 (MQ=255) ataggtgg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAg > 1:3196553/7‑75 (MQ=255) aacgg‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGaa > 1:13178536/4‑75 (MQ=255) tactcA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTG‑CAGGac > 1:14141393/5‑74 (MQ=255) ccagaggg‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGaa > 1:16689862/8‑75 (MQ=255) tgaataaaGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGa > 1:7358825/6‑75 (MQ=255) tggagtaGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGaa > 1:6500847/7‑75 (MQ=255) g‑AAAGGAGTTAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGta > 1:1244918/1‑75 (MQ=255) acaGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGtat > 1:10945403/3‑75 (MQ=255) ctcaGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATaa > 1:7522337/4‑75 (MQ=255) cagAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATaa > 1:14190707/3‑75 (MQ=255) attgttaaGTAT‑‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATaaa > 1:12052027/8‑75 (MQ=255) agggcgaaGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAATTATTAGACTCTT‑CAGGAATGAAGTATaa > 1:3762411/8‑75 (MQ=255) taaGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATaaa > 1:16041920/3‑75 (MQ=255) ggAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATaaa > 1:6919345/1‑75 (MQ=255) ctgCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAg > 1:11544022/3‑75 (MQ=255) agcaaggTATG‑G‑‑‑AG‑AA‑‑‑AAAAAAACTTATGAGCCATTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGt > 1:15199749/7‑75 (MQ=255) tataaGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGt > 1:8837957/5‑75 (MQ=255) tggctagtG‑GC‑‑TG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGtt > 1:7286182/8‑75 (MQ=255) gaggacgtG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGACACTAGATGAGTTATTAGACTCTT‑CAGGATTGAAGTATAAAGtt > 1:5505599/8‑75 (MQ=255) attaGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGtt > 1:16420912/4‑75 (MQ=255) aagctgaTG‑GC‑‑AG‑AA‑‑‑AAAAAAACTTATGCGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGtt > 1:13377270/7‑75 (MQ=255) ttttaggg‑gC‑‑AG‑A‑‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTAt > 1:9446592/8‑75 (MQ=255) tcAGTATG‑GC‑‑AT‑AA‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:2074848/2‑75 (MQ=255) gatcgttG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:17266539/7‑75 (MQ=255) cgaattag‑gC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:11610869/8‑75 (MQ=255) acAGTATGAGC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGt > 1:7959652/2‑75 (MQ=255) aactgggg‑gC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:6657590/8‑75 (MQ=255) tgttgtG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:17615625/6‑75 (MQ=255) tctagg‑gC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATc > 1:15390741/6‑75 (MQ=255) tatacg‑gC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGACACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATc > 1:3121702/6‑75 (MQ=255) ggtaag‑gC‑‑AG‑A‑‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCg > 1:2888461/6‑75 (MQ=255) actccctgC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTAt > 1:4732913/8‑75 (MQ=255) aGTATG‑GCAGAG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTa > 1:9143652/1‑75 (MQ=255) aGTATG‑GC‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTTCCAGGAATGAAGTATAAAGTTa > 1:1840762/1‑75 (MQ=255) tattG‑GC‑‑AGTAG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATc > 1:1517965/4‑75 (MQ=255) taacaatc‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTAt > 1:4388661/8‑75 (MQ=255) aggtacac‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTAt > 1:8243692/8‑75 (MQ=255) actcctgC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATc > 1:103066/7‑75 (MQ=255) aattG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCg > 1:14721545/4‑75 (MQ=255) tatgC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACT‑TT‑CAGGAATGAAGTATAAAGTTATCgaaa > 1:7156781/4‑72 (MQ=255) cttcttgag‑ag‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCg > 1:16734275/8‑75 (MQ=255) ag‑gC‑‑AG‑AA‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTAAAAAGTTATCGCaa > 1:15993888/2‑75 (MQ=255) atttactg‑ag‑‑‑aAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGc > 1:14593917/8‑75 (MQ=255) aatttagg‑ag‑‑‑aAAGAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGc > 1:16409754/8‑75 (MQ=255) ac‑‑AG‑AGA‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCaaa > 1:4087333/2‑75 (MQ=255) tgttcg‑‑‑aAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCaaaa > 1:15457951/6‑75 (MQ=255) tagatg‑‑‑aAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCaaaa > 1:682785/6‑75 (MQ=255) gtg‑ag‑‑‑aAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCaaaat > 1:1007920/3‑74 (MQ=255) tttg‑‑‑aAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCaaaaaa > 1:14514253/4‑75 (MQ=255) | TCCACCGCGATGTAAGTAGCAAGTTTGG‑C‑AAAT‑AAAAAGCCCC‑AGAG‑G‑GG‑CA‑G‑AAAGGAGCCAGTATG‑GC‑‑AG‑AG‑‑‑AAAAAAACTTATGAGCCACTAGATGAGTTATTAGACTCTT‑CAGGAATGAAGTATAAAGTTATCGCAAAAAA > NC_004302/2922‑3066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |