| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | 32569 = | 3957 (6.740) | 359 (0.660) | 8/138 | 0.4 | 10.0% | coding (524/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase |
| ? | NC_004302 | 32599 = | 2770 (5.060) | coding (554/813 nt) | r1tp49 | N‑acetylmuramoyl‑L‑alanine amidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 622 total aligned reads displayed.
ATTTCTTTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_004302/32647‑32569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgat‑g‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAAAGACA > NC_004302/32599‑32673 TTTCTTTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCG < 1:17584471/75‑1 TTTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAaaa < 1:11137736/75‑4 atcTCCTCCAGTGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGATca < 1:11279170/72‑3 TTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGATaat < 1:10072219/75‑4 TTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑T < 1:3298346/75‑1 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTTGA‑TATCGctcact < 1:6693401/75‑7 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGG‑TTTCGAT‑Ggta < 1:8041362/75‑4 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGgcattc < 1:1349553/75‑7 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGActtgc < 1:13140920/75‑6 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TCTCGtcctca < 1:5848654/75‑7 TTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TCTCGccattc < 1:5643153/75‑7 TTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGATtacta < 1:1802685/75‑6 CCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGATattacat < 1:16862398/75‑8 aTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGTT‑T‑A‑TTC‑Att < 1:12591050/74‑3 CTCCC‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑Gttgatct < 1:12264312/75‑8 CTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTtgtc < 1:6304451/75‑5 CTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTG‑AAC < 1:13782453/75‑1 TCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑T‑A‑TTtcaac < 1:1296907/75‑6 TCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAC‑G‑A‑Taattaa < 1:3664255/75‑7 tCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCATTATTAGATTGATTAGA‑TTTCGAT‑‑‑A‑TTC‑Agtact < 1:9485351/74‑6 CCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑Tcgataat < 1:4195160/75‑8 CCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑C‑A‑TTC‑Acccc < 1:11409974/75‑5 CCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑A‑A‑TTtcttgt < 1:533283/75‑7 CCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑‑‑A‑TTC‑Atacta < 1:1285012/75‑6 CCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑‑‑A‑TTC‑Agattt < 1:5110332/75‑6 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑GTA‑TTC‑Accgg < 1:4551172/75‑5 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑C‑TTC‑Atgtct < 1:12677955/75‑6 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑C‑TTC‑AACAgg < 1:14464940/75‑3 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTgagatat < 1:16666168/75‑8 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑Actcgc < 1:14113041/75‑6 CA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TCC‑AAgaac < 1:4436260/75‑5 CA‑TGGTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑ATC‑Ataatc < 1:13992834/75‑6 A‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑T‑TTCcctatat < 1:1474895/75‑8 A‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑CTC‑Acacaac < 1:27528/75‑7 A‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑C‑A‑TTCcccatct < 1:15823962/75‑8 A‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑‑‑A‑TTC‑Agtgactt < 1:922518/75‑8 ttTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑C‑A‑TTCGAACACct < 1:6616802/73‑3 aGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑GCA‑TTC‑AACAagc < 1:8543554/74‑4 TGTTGGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑C‑TTC‑AAaaggaa < 1:3770982/75‑7 TGTTATGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑G‑TTC‑Aggcacac < 1:9342498/75‑8 TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGATAG‑A‑‑TC‑AACACAaa < 1:3089871/75‑3 TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑GTA‑TTC‑AAgcacc < 1:9753810/75‑6 TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑‑‑TTC‑AAaactaac < 1:12426165/75‑8 GTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑C‑TTC‑ACCACctct < 1:3989363/75‑5 GTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑TACACgtgc < 1:16163903/75‑5 GTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACgcatct < 1:16443723/75‑7 GTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑‑CCACACGC‑A < 1:6915527/75‑1 GTTAGGTGGGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AAgtagcgg < 1:8288737/75‑8 cTAGGGGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑ACCACcaaat < 1:7295693/74‑6 AGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑ATTTC‑AACAttcttct < 1:3519917/75‑8 AGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACGCACctgca < 1:7558142/75‑6 AGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACAggctac < 1:820258/75‑7 AGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑Act < 1:13583465/75‑3 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGATTTTCGAT‑G‑A‑TTC‑AACATACGacatg < 1:247833/75‑6 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACTCACacccgct < 1:8462424/75‑8 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACtatccac < 1:2221259/75‑8 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑Acatt < 1:14293649/75‑5 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCA < 1:10969217/75‑1 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACA‑GC‑AATttg < 1:12070521/75‑4 GTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACA‑GC‑AATCca < 1:11542266/75‑3 TGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACCCACGttctgca < 1:9082192/75‑8 GTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑Atcaaag < 1:1500272/75‑7 TGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTGCACtgccgt < 1:2873552/75‑7 TGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACAaacagag < 1:4827900/75‑8 GTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTAGACACtcaggac < 1:6776196/75‑8 GTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACAAACCcagctt < 1:791935/75‑7 ttttaatA‑TTTGGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTT > 1:15421232/8‑75 gtactgGA‑TTACGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTT > 1:7470326/7‑75 agttgAGA‑TTGCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTT > 1:9552206/6‑75 acaggAGA‑TTACGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTT > 1:4257961/6‑75 ttattaA‑TTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTA > 1:7350409/7‑75 ccTTAGA‑TTT‑GAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTAT > 1:6377043/3‑75 tatgttaTCGAG‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATT > 1:14189240/8‑75 caactagTCGAG‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATT > 1:15340915/8‑75 atggtgTTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCCTACATGGAGGAAAAAGAAATGACTTATCTTATT > 1:10658602/7‑75 ttgtggtGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTT > 1:884369/8‑75 tataagtGAT‑G‑A‑TTC‑AACACACGCAAATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTT > 1:9677577/8‑75 gcgagagGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTT > 1:15141098/8‑75 cattgttGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTT > 1:10366883/8‑75 attgcgtGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTT > 1:8661349/8‑75 atgcgctGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGAAAAAAGAAATGACTTATCTTATTTT > 1:5515866/8‑75 actacgaGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTT > 1:17747344/8‑75 tgttattAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:15603474/8‑75 tcggtaGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:4634646/7‑75 gtttgacAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:3009394/8‑75 gtgtttaAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:11981544/8‑75 cggtggaAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:16984142/8‑75 caggcgGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:17240691/7‑75 caaaataAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACACGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:17416151/8‑75 agagatGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGTAGGAAAAAGAAATGACTTATCTTATTTTT > 1:4896261/7‑75 aaagTCGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTT > 1:2044430/5‑75 gcgatGAT‑G‑A‑GTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTt > 1:10839972/6‑74 catcgatT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTG > 1:1334612/8‑75 tggtGAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGC > 1:17162003/5‑75 acgtgT‑G‑A‑TCC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCA > 1:15991538/6‑75 gaAT‑G‑A‑TTA‑AGCACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAA > 1:15731284/3‑75 aatgG‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTGTGCAAA > 1:11700862/5‑75 aaggG‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAA > 1:13447298/5‑75 GAT‑G‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAAA > 1:7091335/1‑75 G‑A‑TTC‑AAC‑CAAGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAAAGACA > 1:13664004/1‑75 ATTTCTTTTTCCTCCA‑TGTTAGGTGTGTAGTTGATTGCGTGTGTTGAATCATCGTTATTAGATTGATTAGA‑TTTCGAT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_004302/32647‑32569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgat‑g‑A‑TTC‑AACACACGC‑AATCAACTACACACCTAACATGGAGGAAAAAGAAATGACTTATCTTATTTTTGCAAAAGACA > NC_004302/32599‑32673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |