mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 603 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,923,107 | 0 | A | T | 78.6% | 29.6 / 2.4 | 30 | I33F (ATT→TTT) | SAUSA300_RS09510 | calcium‑binding protein |
| * | NC_007793 | 725,902 | 0 | G | A | 75.0% | 30.6 / 6.5 | 24 | intergenic (+28/+560) | SAUSA300_RS03485/SAUSA300_RS03490 | inorganic phosphate transporter/peptidase M23 |
| * | NC_007793 | 1,225,505 | 1 | . | G | 73.6% | 250.3 / 134.6 | 140 | coding (1566/1647 nt) | SAUSA300_RS06055 | hypothetical protein |
| * | NC_007793 | 1,154,583 | 0 | T | C | 73.5% | 23.3 / 11.3 | 34 | intergenic (+386/‑168) | SAUSA300_RS05695/SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| * | NC_007793 | 128,677 | 0 | A | G | 73.4% | 1379.2 / inf | 4168 | N339N (AAT→AAC) | SAUSA300_RS00585 | peptidoglycan‑binding protein LysM |
| * | NC_007793 | 1,959,221 | 1 | . | A | 72.7% | 19.8 / 4.0 | 11 | pseudogene (632/788 nt) | SAUSA300_RS09695 | hypothetical protein |
| * | NC_007793 | 1,959,221 | 2 | . | A | 72.7% | 19.8 / 4.0 | 11 | pseudogene (632/788 nt) | SAUSA300_RS09695 | hypothetical protein |
| * | NC_007793 | 2,531,610 | 1 | . | T | 72.7% | 42.2 / 13.5 | 22 | coding (240/360 nt) | SAUSA300_RS13005 | hypothetical protein |
| * | NC_007793 | 2,531,610 | 2 | . | C | 72.7% | 38.6 / 17.3 | 22 | coding (240/360 nt) | SAUSA300_RS13005 | hypothetical protein |
| * | NC_007793 | 2,531,610 | 3 | . | A | 72.7% | 45.5 / 13.2 | 22 | coding (240/360 nt) | SAUSA300_RS13005 | hypothetical protein |
| * | NC_007793 | 613,687 | 0 | C | T | 72.1% | 32.7 / 16.6 | 43 | D847D (GAC→GAT) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 1,929,095 | 0 | A | G | 71.7% | 609.0 / 313.5 | 522 | intergenic (‑181/‑240) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 320,317 | 0 | C | A | 71.5% | 61.0 / 65.9 | 121 | A159S (GCC→TCC) | SAUSA300_RS01440 | quinolone resistance protein NorB |
| * | NC_007793 | 725,905 | 0 | T | C | 71.4% | 17.0 / 7.8 | 21 | intergenic (+31/+557) | SAUSA300_RS03485/SAUSA300_RS03490 | inorganic phosphate transporter/peptidase M23 |
| * | NC_007793 | 901,717 | 0 | A | . | 71.2% | 72.4 / 70.8 | 58 | coding (437/465 nt) | SAUSA300_RS04425 | iron‑sulfur cluster assembly scaffold protein NifU |
| * | NC_007793 | 2,031,030 | 0 | A | . | 70.8% | 9.3 / 21.7 | 24 | coding (36/213 nt) | SAUSA300_RS10220 | hypothetical protein |
| * | NC_007793 | 1,923,112 | 0 | A | T | 70.0% | 21.2 / 5.8 | 30 | L34F (TTA→TTT) | SAUSA300_RS09510 | calcium‑binding protein |
| * | NC_007793 | 2,000,246 | 0 | A | G | 70.0% | 18.5 / 14.9 | 30 | noncoding (452/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| * | NC_007793 | 1,625,515 | 0 | C | T | 69.9% | 387.1 / 208.8 | 351 | R291R (AGG→AGA) | SAUSA300_RS08025 | geranyltranstransferase |
| * | NC_007793 | 1,929,191 | 0 | A | T | 69.6% | 24.1 / 14.2 | 23 | intergenic (‑277/‑144) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |