| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,154,583 | 0 | T | C | 73.5% | 23.3 / 11.3 | 34 | intergenic (+386/‑168) | SAUSA300_RS05695/SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/7); new base C (1/24); total (3/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.90e-01 | |||||||||||
CTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCA > NC_007793/1154489‑1154677 | cTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATAACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagag < 1:4625926/100‑2 (MQ=21)cTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAAAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagag < 1:4165763/100‑2 (MQ=21) tataACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaa < 1:2025911/100‑4 (MQ=21) taACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaat < 1:1155660/100‑6 (MQ=21) taACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaat < 1:4834307/100‑6 (MQ=21) aaCAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGTTCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaata < 1:1285760/100‑7 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGGGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:1256871/100‑9 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:3771437/100‑9 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGACACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:3060780/100‑9 (MQ=21) aGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaataggat < 1:1303225/100‑11 (MQ=18) aGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaataggag < 1:4618377/100‑11 (MQ=18) gcaagttggcggggCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGGCAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAg > 1:555075/11‑100 (MQ=11) gcaagttggcggggCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAg > 1:3381702/11‑100 (MQ=21) ccccaacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAAtgtg < 1:3931335/97‑1 (MQ=255) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:675480/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:2848739/98‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:5627034/99‑1 (MQ=14) caacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCaa < 1:4997485/100‑1 (MQ=14) caGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGtt < 1:3223045/100‑1 (MQ=14) aaaTAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgggg < 1:957319/100‑1 (MQ=14) ccAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:3781607/100‑1 (MQ=255) ccAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:2001943/100‑1 (MQ=255) ccAAGTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:5152859/100‑1 (MQ=255) acagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAgg < 1:282221/100‑1 (MQ=11) acagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAgg < 1:2430767/100‑1 (MQ=11) acaaacaaTGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAgg < 1:2142470/100‑1 (MQ=255) cagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAggt < 1:3787344/97‑2 (MQ=11) cagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAggg < 1:2690014/97‑2 (MQ=11) aTGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAAcccct < 1:2498991/100‑2 (MQ=255) tGCAAGTTGGGGTGGGGCCCAGCACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCaa < 1:932478/100‑1 (MQ=14) tGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCaa < 1:2306233/100‑1 (MQ=14) gCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAAt > 1:1937644/1‑100 (MQ=255) cccAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCa < 1:3401722/100‑1 (MQ=255) cccAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCa < 1:824813/100‑1 (MQ=14) | CTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCA > NC_007793/1154489‑1154677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |