| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,687 | 0 | C | T | 72.1% | 32.7 / 16.6 | 43 | D847D (GAC→GAT) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base C (12/0); new base T (31/0); total (43/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
ACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGA > NC_007793/613602‑613770 | actcagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatag > 1:998647/1‑100 (MQ=255) cagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagtga > 1:1761334/1‑100 (MQ=255) cagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcga > 1:2300113/1‑100 (MQ=255) cagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGAtagcgactcagactcagatagcgactcagactcagatagcgactcagactcaga > 1:2704982/1‑100 (MQ=255) tcagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGCGATTCAGATTGAGACAGCGA‑TCAGA‑TCGGaagagcac > 1:116260/1‑93 (MQ=14) gcagacagcgactcagactcagacagcgactcagactCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagca > 1:166508/2‑94 (MQ=11) gcagacAGTGACTCAGGCTCAGACAGCGACTCAGGTTCAGATAGCGACTCAGAATCAGATAGCGATTCGGATTCAGACAGGGATTCAGA‑TCGGaagagca > 1:4614617/2‑94 (MQ=18) ccagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGACTCAGA‑TCGGaagagca > 1:1471719/2‑94 (MQ=11) ccagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGATAGCGATTCAGACTCAGACAGGGACTCAGA‑TCGGaagagca > 1:4491107/2‑94 (MQ=14) ccagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGAAAGTGATTCAGATTCAGACAGTGACTCAGA‑TCGGaaggagc > 1:3875303/2‑94 (MQ=14) acagacAGCGATTCAGATTCAGACAGCGACCCAGACCCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGCGATTCAGA‑TCGGaagagca > 1:926586/2‑94 (MQ=17) ccgacAGTGATTCCGACTCAGACAGCGATTCAGATTCCGACAGTGATTCCGACTCAGATAGCGATTCCGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:1776018/3‑93 (MQ=21) cagatAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGAATCAGA‑TCGGaagagcac > 1:168234/1‑93 (MQ=14) cagatAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGAGACTCAGA‑TCGGaagagcac > 1:5009109/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGACTCAGA‑TCGGaagagcac > 1:1177121/1‑93 (MQ=11) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGCTTCAGACTCAGATAGCCACTCAGA‑TCGGaagagcac > 1:852263/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGTGAATCAGA‑TCGGaagagcac > 1:1537331/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:564166/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:2207885/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACGCAGA‑TCGGaagagcac > 1:715417/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACGCAGA‑TCGGaagagcac > 1:2464271/1‑93 (MQ=14) cagacAGTGACTCGGACTCAGACAGTGACTCAGACTCAGATAGCGGTTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACACAGA‑TCGGaagagcac > 1:4966753/1‑93 (MQ=14) cagacAGCGATTCAGATTCCGACAGTGATTCCGACTCAGATAGCGATTCCGACTCAGATAGCGACTCAGATTCAGACAGCAATTCAGA‑TCGGaagagcac > 1:2108500/1‑93 (MQ=18) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:4017470/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGCGATTCAGA‑TCGGaagagcac > 1:1625662/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTAACTCAGA‑TCGGaagagcac > 1:1449300/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGAGACTCAGA‑TCGGaagagcac > 1:3368889/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:84879/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:1938395/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagcac > 1:212089/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:1214158/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:4663812/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcac > 1:4394301/1‑93 (MQ=14) cacacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:4271003/4‑93 (MQ=14) atgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:1064533/3‑93 (MQ=14) tgacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACGCAGA‑TCGGaagagcaca > 1:1560157/2‑92 (MQ=14) cgacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGACGGCGACTCAGACTCAGACAGTGACCCAGA‑TCGGaagagcaca > 1:2073823/2‑92 (MQ=11) agatAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcaca > 1:3260847/1‑92 (MQ=14) agacAGTGACTCAGGCTCAGACAGCGACTCAGGTTCAGATAGCGACTCAGAATCAGATAGCGATTCGGATTCAGACAGTGGTTCAGA‑TCGGaagagcaca > 1:1868920/1‑92 (MQ=18) agacAGCGACTCAGATTCAGACAGCGACTCAGGCTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcaca > 1:2383958/1‑92 (MQ=11) agacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCTTCTCAGA‑TCGGaagagcaca > 1:5336667/1‑92 (MQ=14) agacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCTGATTCAGACAGCGACCCAGA‑TCGGaagagcaca > 1:4824815/1‑92 (MQ=14) gacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCGACTTAGA‑TCGGaagagcacac > 1:574449/1‑91 (MQ=14) gacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcacac > 1:5537475/1‑91 (MQ=14) acAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcacacg > 1:391343/1‑90 (MQ=14) acAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCGACGCAGA‑TCGGaagagcacacg > 1:2227259/1‑90 (MQ=14) cagaCAGCGATTCAGACTCAGATAGCGACTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGa > 1:5197306/1‑100 (MQ=255) cagactcagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa > 1:2601664/1‑100 (MQ=255) | ACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGA > NC_007793/613602‑613770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |