Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,929,0950AG71.7% 609.0 / 313.5 522intergenic (‑181/‑240)SAUSA300_RS09560/SAUSA300_RS09565transposase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (130/18);  new base G (369/5);  total (499/23)
Fisher's exact test for biased strand distribution p-value = 5.31e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-21

Only 100 of 529 total aligned reads displayed.

AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGT  >  NC_007793/1929021‑1929194
                                                                          |                                                                                                    
aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTgg                                                                            <  1:829680/100‑2 (MQ=255)
                           tagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCAcc                                                >  1:2723946/3‑100 (MQ=255)
                                    taatatacaagTCGCCTATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGtcatc                                         <  1:4116195/91‑1 (MQ=255)
                                              gctgCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                             >  1:4759853/4‑99 (MQ=255)
                                              gTCGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTgcgct                             >  1:941626/1‑99 (MQ=255)
                                                cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCa                            >  1:2645053/1‑100 (MQ=255)
                                                cGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                           >  1:489136/1‑97 (MQ=255)
                                                cGCCTATCTCTCAGACGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                             >  1:5575164/1‑99 (MQ=255)
                                                 gCCTATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGCTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                            >  1:304602/1‑98 (MQ=255)
                                                     aTCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                      >  1:3013240/1‑100 (MQ=255)
                                                         tccAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:4528238/3‑99 (MQ=255)
                                                         cttagtcGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:5171300/7‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACGTCATAGCACCAGTCATCAGTGGCTGCGCCGTTGCGtat                    >  1:3355693/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATTATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3780447/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4615659/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:5000219/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:5640994/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:2909693/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:669615/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3323136/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:2045930/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3964195/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:1123383/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:5245508/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:1587529/1‑98 (MQ=255)
                                                         ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4577032/1‑98 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCgcatta                  >  1:5399684/1‑95 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCgcatta                  >  1:3104207/1‑95 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5446144/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:694022/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5502149/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:3459373/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5229117/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:217007/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:439533/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:4336904/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:2305763/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:3737120/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:623624/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:1457195/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:1938488/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:2545550/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:1384161/1‑99 (MQ=255)
                                                         ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:4858626/1‑99 (MQ=255)
                                                          tcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                 >  1:4984785/1‑98 (MQ=255)
                                                           gagtcGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:260116/5‑99 (MQ=255)
                                                           cAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5145492/1‑99 (MQ=255)
                                                           cAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                >  1:1531583/1‑97 (MQ=255)
                                                           cAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                >  1:2982355/1‑97 (MQ=255)
                                                               cGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact              >  1:2402370/1‑95 (MQ=255)
                                                               cGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact              >  1:2754804/1‑95 (MQ=255)
                                                               cGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact              >  1:3834516/1‑95 (MQ=255)
                                                                ttCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTCTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACtt             >  1:4012838/2‑100 (MQ=255)
                                                                 tCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTa            >  1:1864623/1‑100 (MQ=255)
                                                                  cAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt           >  1:1210013/1‑100 (MQ=255)
                                                                    cgttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg         >  1:4193758/3‑100 (MQ=255)
                                                                    acttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg         >  1:3579528/3‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:1640852/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:4297002/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:132843/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:3884007/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:3495047/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:2119153/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:3219216/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:2775590/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:5676632/2‑100 (MQ=255)
                                                                     cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGCTGCGTATTATACTTATTgg        >  1:548624/2‑100 (MQ=255)
                                                                     attAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:3939730/2‑100 (MQ=255)
                                                                     aatAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:5300646/3‑100 (MQ=255)
                                                                      ttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1297122/1‑100 (MQ=255)
                                                                      ttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:2206382/1‑100 (MQ=255)
                                                                      ctAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:4811338/2‑100 (MQ=255)
                                                                      ctAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1006017/2‑100 (MQ=255)
                                                                      atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1735358/2‑100 (MQ=255)
                                                                      atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:3266572/2‑100 (MQ=255)
                                                                      atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:2947510/2‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATTATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4268755/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:906856/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1064497/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:5744883/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3144941/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1272727/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1687199/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1811120/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2013330/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:237317/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2509118/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2676351/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2702885/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2852614/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:5069258/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3419428/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3680145/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4082279/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4221762/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4426046/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4476254/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4938755/1‑100 (MQ=255)
                                                                       tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCGTTGCGTATTATACTTATTGGCt      >  1:4653147/1‑100 (MQ=255)
                                                                       acgACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTa     >  1:3628476/3‑100 (MQ=255)
                                                                          |                                                                                                    
AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGT  >  NC_007793/1929021‑1929194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑