mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 236 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,975,148 | 0 | A | . | 79.1% | 91.4 / 32.4 | 43 | intergenic (+99/+171) | unknown/unknown | Myo‑inositol 2‑dehydrogenase 1 (EC 1.1.1.18)/RTX toxin transporter, determinant D |
| * | 1 | 161,103 | 0 | G | T | 76.7% | 311.3 / 109.7 | 176 | A13D (GCC→GAC) | unknown | hypothetical protein |
| * | 1 | 248,309 | 0 | G | A | 74.6% | 263.3 / 98.3 | 190 | intergenic (‑115/+74) | unknown/unknown | Transposase, IS200 family/SSU ribosomal protein S17p (S11e) |
| * | 1 | 428,882 | 0 | A | G | 67.9% | 53.3 / 33.0 | 56 | intergenic (‑270/+522) | unknown/unknown | hypothetical protein/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 476,658 | 1 | . | T | 66.7% | 23.9 / 12.9 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 2 | . | A | 66.7% | 25.5 / 12.7 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 3 | . | A | 66.7% | 23.9 / 12.7 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 4 | . | T | 66.7% | 25.8 / 12.9 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 5 | . | T | 66.7% | 25.2 / 12.9 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 6 | . | A | 66.7% | 25.8 / 12.7 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 7 | . | G | 66.7% | 23.2 / 15.1 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 8 | . | C | 66.7% | 23.5 / 15.2 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 9 | . | A | 66.7% | 25.4 / 12.7 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 10 | . | G | 66.7% | 23.2 / 15.1 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 476,658 | 11 | . | A | 66.7% | 25.4 / 12.7 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 1,975,170 | 0 | C | T | 61.3% | 7.5 / 23.9 | 31 | intergenic (+121/+149) | unknown/unknown | Myo‑inositol 2‑dehydrogenase 1 (EC 1.1.1.18)/RTX toxin transporter, determinant D |
| * | 1 | 1,027,872 | 0 | T | . | 60.5% | 16.2 / 146.5 | 86 | intergenic (‑12/+41) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Leu‑TAA |
| * | 1 | 1,027,873 | 0 | C | . | 60.5% | 13.3 / 162.8 | 86 | intergenic (‑13/+40) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Leu‑TAA |
| * | 1 | 1,610,238 | 0 | A | G | 58.8% | 33.5 / 100.4 | 116 | E356E (GAA→GAG) | unknown | hypothetical protein |
| * | 1 | 1,445,274 | 0 | A | C | 57.4% | 21.9 / 59.0 | 54 | T1108P (ACC→CCC) | unknown | Chromosome partition protein MukB |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 476658 | 2 (0.020) | 15 (0.180) +TAATTAGCAGA |
16/400 | 3.1 | 88.7% | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| ? | 1 | 476659 = | 2 (0.020) | intergenic (‑99/‑86) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB | |||||
| * | ? | 1 | = 281962 | NA (NA) | 12 (0.150) | 9/396 | 4.7 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 282067 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 31460 = | 0 (0.000) | 11 (0.140) +26 bp |
8/378 | 4.8 | 20.9% | intergenic (‑161/+48) | unknown/unknown | FIGfam050825/Cytochrome c‑type heme lyase subunit nrfF, nitrite reductase complex assembly / Cytochrome c‑type heme lyase subunit nrfG, nitrite reductase complex assembly |
| ? | 1 | 31616 = | 95 (1.080) | coding (942/1050 nt) | unknown | Cytochrome c‑type heme lyase subunit nrfF, nitrite reductase complex assembly / Cytochrome c‑type heme lyase subunit nrfG, nitrite reductase complex assembly | |||||
| * | ? | 1 | = 612693 | 13 (0.150) | 27 (0.310) | 9/430 | 5.0 | 67.5% | coding (35/174 nt) | unknown | hypothetical protein |
| ? | 1 | 612998 = | NA (NA) | coding (125/762 nt) | unknown | Mobile element protein | |||||
| * | ? | 1 | = 1288640 | 0 (0.000) | 10 (0.110) +CGA |
7/424 | 5.6 | 100% | intergenic (‑181/‑132) | unknown/unknown | hypothetical protein/hypothetical protein |
| ? | 1 | 1289309 = | 0 (0.000) | intergenic (+13/+318) | unknown/unknown | hypothetical protein/hypothetical protein | |||||
| * | ? | 1 | 370152 = | 0 (0.000) | 23 (0.260) | 6/428 | 6.0 | 30.1% | coding (95/348 nt) | unknown | hypothetical protein |
| ? | 1 | 447704 = | 107 (1.220) | intergenic (+227/‑275) | unknown/unknown | Mobile element protein/Deoxyribose‑phosphate aldolase (EC 4.1.2.4) | |||||
| * | ? | 1 | 1222363 = | 101 (1.140) | 6 (0.070) | 5/412 | 6.2 | 5.7% | coding (734/1953 nt) | unknown | Electron transport complex protein RnfC |
| ? | 1 | 1222750 = | 100 (1.180) | coding (1121/1953 nt) | unknown | Electron transport complex protein RnfC | |||||
| * | ? | 1 | 757095 = | 79 (0.900) | 6 (0.070) | 5/410 | 6.2 | 6.1% | coding (39/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) |
| ? | 1 | 757438 = | 111 (1.320) | coding (382/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) | |||||
| * | ? | 1 | = 1219701 | 89 (1.010) | 5 (0.060) | 5/422 | 6.3 | 5.3% | coding (322/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains |
| ? | 1 | = 1219953 | 92 (1.060) | coding (574/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains | |||||
| * | ? | 1 | = 898407 | 115 (1.300) | 5 (0.060) | 5/418 | 6.3 | 4.4% | intergenic (+260/‑4) | unknown/unknown | Carbon starvation protein A/Transcriptional regulator MraZ |
| ? | 1 | = 898541 | 106 (1.240) | coding (131/459 nt) | unknown | Transcriptional regulator MraZ | |||||