| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 1222363 = | 101 (1.140) | 6 (0.070) | 5/412 | 6.2 | 5.7% | coding (734/1953 nt) | unknown | Electron transport complex protein RnfC |
| ? | 1 | 1222750 = | 100 (1.180) | coding (1121/1953 nt) | unknown | Electron transport complex protein RnfC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGATAGCCCGTTTCGCGCAACAAGTGATAAATCGGCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 1/1222616‑1222363‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggaagAAGAAAAAAATTGTATTCGCTGTTCTGCCTGTTCCGATGCCTGCCCGGTGAAACTCATGCCGCAGCAATTGTATTGGTTTGCACGCAGCGAAGATCACGAAAAATCGGAA > 1/1222750‑1222859 TTGATAGCCCGTTTCGCGCAACAAGTGATAAATCGGCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGG > 1:526846/1‑251TTGATAGCCCGTTTCGCGCAACAAGTGATAAATCGGCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGG > 1:774519/1‑251 GCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTCTGC > 1:323613/1‑247 GCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTCTGC > 1:896895/1‑247 CACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTCTGCCTGTTCCGATGCCTGCCCGGTGAAACTCATGCCGCAGCAATTGTATTGG < 1:568697/251‑1 GAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTC < 1:326056/192‑1 GTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTCTGCCTGTTCCGATGCCTGCCCGGTGAAACTCATGCCGCAGCAATTGTATTGGTTTGCACGCAGCGAAGATCACGAAAAATCGGAA > 1:418911/1‑251 GTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAGAAGAAAAAAATTGTATTCGCTGTTCTGCCTGTTCCGATGCCTGCCCGGTGAAACTCATGCCGCAGCAATTGTATTGGTTTGCACGC < 1:433918/181‑1 TTGATAGCCCGTTTCGCGCAACAAGTGATAAATCGGCGTTCCAAAACGCGCCCAATAGTTGCCTTTATCGGCGATTTTATCACCGGTGAGGGTGACGACGCGCTCAATCAGCGGTTCATCATCCATCACTGCGCGTTTAATAGCAAAAGCGGTGCCGATGTTTTGCATCAGCACGCCGATACCGGAGGAGCGTTGACCGCTAGGTACCTCCATGCCGGTCAGCACTTGAATTAACTGTTTTGCCGCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 1/1222616‑1222363‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggaagAAGAAAAAAATTGTATTCGCTGTTCTGCCTGTTCCGATGCCTGCCCGGTGAAACTCATGCCGCAGCAATTGTATTGGTTTGCACGCAGCGAAGATCACGAAAAATCGGAA > 1/1222750‑1222859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |