#=GENOME_DIFF	1.0
#=CREATED	10:35:38 07 Feb 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/31R.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk31R
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/31R.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	180246288
#=MAPPED-READS	836828
SNP	1	2387	1	1088	A
SNP	2	2388	1	1525	A
SNP	3	2389	1	4364	T
SNP	4	2390	1	5160	T
SNP	5	2391	1	5211	T
SNP	6	2392	1	5213	G
SNP	7	2393	1	5217	T
SNP	8	2394	1	5264	G
SNP	9	2395	1	5267	C
SNP	10	2396	1	7360	G
SNP	11	2397	1	7401	T
SNP	12	2398	1	31999	A
SNP	13	2399	1	33869	T
SNP	14	2400	1	34390	T
SNP	15	2401	1	38787	C
SNP	16	2402	1	38992	C
SNP	17	2403	1	39765	G
SNP	18	2404	1	42219	A
SNP	19	2405	1	43172	A
SNP	20	2407	1	46861	G
SNP	21	2408	1	49304	T
SNP	22	2409	1	54478	T
SNP	23	2410	1	54600	G
SNP	24	2411	1	54764	G
SNP	25	2412	1	56131	T
SNP	26	2413	1	56663	T
SNP	27	2414	1	58745	A
SNP	28	2415	1	61028	A
SNP	29	2416	1	63179	C
SNP	30	2417	1	64970	C
SNP	31	2425	1	71923	C
SNP	32	2426	1	72414	T
SNP	33	2427	1	72581	A
SNP	34	2428	1	73832	G
SNP	35	2429	1	75253	C
SNP	36	2436	1	78736	A
SNP	37	2437	1	80182	T
SNP	38	2438	1	81129	G
SNP	39	2439	1	81633	T
SNP	40	2440	1	81759	C
SNP	41	2441	1	83301	G
SNP	42	2442	1	85631	G
SNP	43	2443	1	87994	T
SNP	44	2444	1	88049	T
SNP	45	2445	1	88618	T
SNP	46	2446	1	92111	G
SNP	47	2447	1	94733	G
SNP	48	2448	1	96165	T
SNP	49	2449	1	98295	C
SNP	50	2450	1	100575	T
SNP	51	2451	1	101298	C
INS	52	2452,2453	1	101854	TT	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=T
SNP	53	2454	1	102666	T
SNP	54	2455	1	103954	G
SNP	55	2456	1	104673	G
SNP	56	2457	1	104821	A
INS	57	2458	1	107007	G
INS	58	5162	1	107615	CTCACCACG	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CTCACCACG
SNP	59	2459	1	107894	A
SNP	60	2460	1	110046	C
SNP	61	2461	1	111330	G
SNP	62	2462	1	113375	T
INS	63	5163	1	114678	CAA	repeat_length=3	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CAA
SNP	64	2463	1	114986	C
SNP	65	2464	1	115294	G
SNP	66	2465	1	115510	T
SNP	67	2466	1	118351	A
SNP	68	2467	1	120347	G
SNP	69	2468	1	122394	C
SNP	70	2469	1	123163	G
DEL	71	2470	1	123610	1
SNP	72	2471	1	125165	C
SNP	73	2472	1	126095	C
SNP	74	2473	1	127464	G
SNP	75	2474	1	129880	A
SNP	76	2475	1	130301	T
SNP	77	2476	1	135265	G
SNP	78	2477	1	136281	T
SNP	79	2478	1	136795	C
SNP	80	2479	1	139138	T
SNP	81	2480	1	144211	T
SNP	82	2481	1	144340	T
SNP	83	2482	1	144633	G
SNP	84	2483	1	145370	A
SNP	85	2484	1	145908	A
SNP	86	2485	1	146545	G
SNP	87	2486	1	147639	C
SNP	88	2487	1	149812	A
SNP	89	2488	1	149939	C
SNP	90	2489	1	150027	C
SNP	91	2490	1	150050	A
SNP	92	2491	1	150067	A
SNP	93	2492	1	150070	G
SNP	94	2493	1	150090	A
SNP	95	2494	1	150115	T
SNP	96	2495	1	150339	G
SNP	97	2496	1	150529	G
SNP	98	2497	1	152482	T
SNP	99	2498	1	155653	A
SNP	100	2499	1	156442	T
SNP	101	2500	1	156768	T
SNP	102	2502	1	158633	T
SNP	103	2503	1	158807	A
SNP	104	2504	1	159517	T
SNP	105	2505	1	159778	G
SNP	106	2506	1	160731	A
SNP	107	2507	1	160973	A
SNP	108	2511	1	161168	G
SNP	109	2512	1	163564	G
SNP	110	2513	1	165083	C
SNP	111	2514	1	165719	A
SNP	112	2515	1	165917	G
SNP	113	2516	1	168532	G
SNP	114	2517	1	169290	G
SNP	115	2518	1	170715	T
SNP	116	2519	1	172818	A
SNP	117	2523	1	175529	T
SNP	118	2524	1	175792	A
SNP	119	2525	1	176469	A
SNP	120	2526	1	177317	C
SNP	121	2527	1	177832	T
SNP	122	2528	1	178107	T
SNP	123	2529	1	178266	G
SNP	124	2530	1	178909	A
SNP	125	2533	1	183314	G
SNP	126	2534	1	183884	A
SNP	127	2535	1	185005	T
SNP	128	2536	1	186583	C
SNP	129	2537	1	187626	T
SNP	130	2538	1	187958	T
SNP	131	2539	1	188590	A
SNP	132	2540	1	191916	G
SNP	133	2541	1	192060	A
SNP	134	2542	1	192425	A
SNP	135	2543	1	193663	G
SNP	136	2544	1	197484	T
SNP	137	2545	1	198152	T
SNP	138	2546	1	200321	T
SNP	139	2547	1	204997	C
SNP	140	2548	1	207692	A
SNP	141	2549	1	209426	A
SNP	142	2550	1	209846	G
SNP	143	2551	1	210254	T
SNP	144	2552	1	210336	G
SNP	145	2553	1	210643	C
SNP	146	2554	1	210666	G
SNP	147	2555	1	212635	C
SNP	148	2556	1	212783	G
SNP	149	2557	1	213713	C
SNP	150	2558	1	214706	T
SNP	151	2559	1	217314	C
SNP	152	2560	1	218116	G
SNP	153	2561	1	226247	G
SNP	154	2562	1	228026	A
SNP	155	2563	1	229915	C
SNP	156	2564	1	230343	C
SNP	157	2565	1	230488	A
SNP	158	2566	1	231265	A
SNP	159	2567	1	232105	A
SNP	160	2568	1	232495	C
SNP	161	2569	1	233097	C
SNP	162	2570	1	233762	C
SNP	163	2572	1	235785	A
SNP	164	2573	1	236412	G
SNP	165	2574	1	238668	G
SNP	166	2575	1	242442	G
SNP	167	2576	1	245554	T
SNP	168	2580	1	247828	A
SUB	169	2581,2582	1	247833	2	AC
SNP	170	2583	1	248018	C
SNP	171	2584	1	248048	G
SNP	172	2585	1	248054	C
SNP	173	2586	1	248080	T
SNP	174	2588	1	249501	A
SNP	175	2589	1	250427	A
SNP	176	2590	1	254419	T
SNP	177	2591	1	255026	A
SNP	178	2592	1	256108	T
SNP	179	2593	1	256775	T
SNP	180	2594	1	257324	C
SNP	181	2595	1	261668	C
SNP	182	2596	1	262931	C
SNP	183	2597	1	263930	T
SNP	184	2598	1	264133	A
SNP	185	2604	1	264649	G
SNP	186	2606	1	268373	T
SNP	187	2607	1	270534	G
SNP	188	2608	1	273373	C
SNP	189	2609	1	274976	T
SNP	190	2611	1	279591	G
SNP	191	2612	1	287382	C
SNP	192	2613	1	287760	T
SNP	193	2614	1	287922	T
SNP	194	2615	1	290915	C
SNP	195	2616	1	291871	A
SNP	196	2617	1	292435	T
SNP	197	2618	1	292550	C
SNP	198	2619	1	294150	T
SNP	199	2620	1	294343	G
INS	200	5176	1	294923	AAT
SNP	201	2621	1	296043	G
SNP	202	2622	1	297692	G
SNP	203	2623	1	298109	T
SNP	204	2624	1	299048	T
SNP	205	2629	1	301836	A
SNP	206	2630	1	303503	A
SNP	207	2631	1	304148	G
SNP	208	2632	1	304581	A
SNP	209	2633	1	309156	C
SNP	210	2634	1	309537	A
SNP	211	2635	1	311596	G
SNP	212	2636	1	313119	G
DEL	213	5103,5179	1	313251	19
SNP	214	2637	1	314751	T
SNP	215	2638	1	315300	T
SNP	216	2639	1	316301	C
SUB	217	2640,2641	1	316840	2	CG
SNP	218	2642	1	317354	T
SNP	219	2645	1	318654	G
SNP	220	2646	1	320182	A
SNP	221	2647	1	322563	A
SNP	222	2648	1	323238	G
SNP	223	2649	1	324178	G
SNP	224	2650	1	325752	T
SNP	225	2651	1	326769	C
SNP	226	2652	1	327491	A
SNP	227	2653	1	328041	A
SNP	228	2654	1	329249	C
SNP	229	2655	1	329814	C
SNP	230	2656	1	330113	A
SNP	231	2657	1	332376	G
SNP	232	2658	1	332570	C
SNP	233	2659	1	333638	C
SNP	234	2660	1	335388	C
SNP	235	2661	1	335479	T
DEL	236	2662	1	336708	1
SNP	237	2663	1	337490	G
SNP	238	2664	1	337554	G
SNP	239	2665	1	337708	A
SNP	240	2666	1	340416	A
SNP	241	2667	1	343057	G
SNP	242	2668	1	345427	G
SNP	243	2669	1	347363	T
SNP	244	2670	1	348581	G
SNP	245	2671	1	348754	C
SNP	246	2672	1	350260	C
SNP	247	2673	1	352113	C
SNP	248	2674	1	354696	G
SNP	249	2675	1	354830	G
SNP	250	2676	1	356458	A
SNP	251	2677	1	360192	A
SNP	252	2678	1	365717	A
SNP	253	2679	1	365915	C
SNP	254	2680	1	367308	G
SNP	255	2681	1	367461	A
SNP	256	2682	1	368370	T
SNP	257	2683	1	369401	T
SNP	258	2686	1	370208	G
SNP	259	2687	1	370216	A
SNP	260	2688	1	370222	C
DEL	261	2689	1	370225	1
SNP	262	2690	1	371403	G
SNP	263	2691	1	375778	A
SNP	264	2692	1	376515	T
SNP	265	2693	1	376753	A
SNP	266	2695	1	380672	G
SNP	267	2696	1	380894	G
SNP	268	2697	1	388701	A
SNP	269	2698	1	388914	C
SNP	270	2699	1	392003	G
SNP	271	2702	1	395407	T
SNP	272	2703	1	396285	C
SNP	273	2704	1	396830	G
SNP	274	2705	1	397082	T
SNP	275	2706	1	398422	T
SNP	276	2707	1	399439	T
SNP	277	2708	1	400468	G
SNP	278	2713	1	401447	A
SNP	279	2714	1	402659	C
SNP	280	2715	1	402863	G
SNP	281	2716	1	402944	A
SNP	282	2717	1	404348	G
DEL	283	2718	1	404415	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	284	2719	1	404994	C
SNP	285	2720	1	406075	T
DEL	286	5105,5190	1	406631	393
SNP	287	2721	1	407962	T
SNP	288	2722	1	408399	G
SNP	289	2725	1	410331	G
SNP	290	2726	1	416798	T
SNP	291	2727	1	417283	A
SNP	292	2728	1	418554	C
SNP	293	2729	1	418875	A
SNP	294	2730	1	421506	A
SNP	295	2731	1	422574	G
SNP	296	2732	1	423524	G
SNP	297	2733	1	425881	T
SNP	298	2734	1	425981	A
SNP	299	2735	1	426456	G
SNP	300	2736	1	427047	G
SNP	301	2737	1	428276	G
SNP	302	2738	1	428526	T
SNP	303	2740	1	428939	G
SNP	304	2741	1	434529	T
INS	305	2742	1	435875	T
SNP	306	2743	1	435881	A
SNP	307	2744	1	436272	T
SNP	308	2745	1	440144	G
DEL	309	5108,5192	1	440794	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GCA
SNP	310	2746	1	441006	G
DEL	311	5109,5193	1	444395	1609
DEL	312	2747	1	446256	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SUB	313	2748,2749	1	446539	2	TA
SNP	314	2750	1	446542	C
SUB	315	2751,2752	1	446544	2	AA
SUB	316	2753,2754	1	446559	2	AT
SNP	317	2755	1	446565	T
SNP	318	2756	1	446583	G
SNP	319	2757	1	446591	T
SNP	320	2758	1	446593	T
DEL	321	2759	1	446605	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	322	2760	1	446608	A
SNP	323	2769	1	447713	T
SNP	324	2770	1	450605	C
SNP	325	2771	1	450678	A
INS	326	2772	1	450758	A	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=9	repeat_seq=A
SNP	327	2773	1	450936	A
SNP	328	2774	1	452594	C
SNP	329	2775	1	452819	A
SNP	330	2776	1	452933	C
SNP	331	2777	1	453939	G
SNP	332	2778	1	454038	A
SNP	333	2779	1	454100	C
SNP	334	2780	1	456446	A
SNP	335	2781	1	457042	G
SNP	336	2782	1	457976	C
SNP	337	2783	1	460421	A
SNP	338	2784	1	462227	G
SNP	339	2785	1	463137	C
SNP	340	2786	1	463392	A
SNP	341	2787	1	463547	C
SNP	342	2788	1	463967	A
SNP	343	2789	1	467744	T
SNP	344	2790	1	467794	C
SNP	345	2791	1	467858	A
SNP	346	2792	1	468576	G
SNP	347	2793	1	468935	C
SNP	348	2794	1	468999	T
SNP	349	2796	1	470133	T
SNP	350	2797	1	470321	G
SNP	351	2798	1	470335	G
SNP	352	2799	1	471507	G
SNP	353	2800	1	472441	G
SNP	354	2801	1	474168	G
SNP	355	2802	1	475181	A
SNP	356	2803	1	475778	C
SNP	357	2804	1	475862	T
SNP	358	2805	1	476387	C
SNP	359	2817	1	477698	C
SNP	360	2818	1	477765	C
SNP	361	2819	1	478208	T
SNP	362	2820	1	478612	A
SNP	363	2821	1	481934	T
SNP	364	2822	1	482738	C
SNP	365	2823	1	483168	G
SNP	366	2824	1	483350	G
SNP	367	2825	1	485986	A
SNP	368	2826	1	490143	G
DEL	369	5111,5195	1	491511	12
SNP	370	2828	1	492149	T
SNP	371	2829	1	493995	C
SNP	372	2831	1	500236	T
SNP	373	2833	1	501844	T
SNP	374	2834	1	501972	A
SNP	375	2838	1	504519	G
SNP	376	2841	1	506426	G
SNP	377	2842	1	510517	G
SNP	378	2843	1	510845	G
SNP	379	2844	1	511589	C
SNP	380	2845	1	513013	A
DEL	381	5112,5197	1	513143	1462
SNP	382	2846	1	514903	T
SNP	383	2847	1	514909	T
SNP	384	2848	1	514955	G
SNP	385	2849	1	514959	C
SNP	386	2850	1	516223	C
SNP	387	2853	1	516970	C
SNP	388	2854	1	517247	A
SNP	389	2855	1	518276	T
SNP	390	2856	1	519158	A
SNP	391	2857	1	520187	A
SNP	392	2858	1	521558	A
SNP	393	2859	1	524286	C
DEL	394	5113,5198	1	525659	4
SNP	395	2860	1	526319	T
SNP	396	2861	1	526550	G
INS	397	2862	1	526719	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	398	2864	1	532049	C
SNP	399	2865	1	532218	A
SNP	400	2866	1	533403	A
SNP	401	2867	1	534445	A
SNP	402	2868	1	534508	G
SNP	403	2869	1	536125	T
SNP	404	2872	1	544438	G
SNP	405	2873	1	545003	G
SNP	406	2874	1	550626	A
SNP	407	2875	1	551259	A
INS	408	2876	1	552236	T
SNP	409	2877	1	553445	G
SNP	410	2878	1	554820	A
SNP	411	2879	1	554944	C
SNP	412	2880	1	556340	C
SNP	413	2881	1	556403	A
SNP	414	2883	1	561048	C
INS	415	5199	1	562654	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
SNP	416	2884	1	563358	A
SNP	417	2885	1	565297	A
SNP	418	2886	1	565578	A
SNP	419	2887	1	567287	G
SNP	420	2888	1	567465	G
SNP	421	2889	1	568105	T
SNP	422	2890	1	568143	T
SNP	423	2891	1	569718	C
SNP	424	2892	1	570967	C
SNP	425	2893	1	571275	A
SNP	426	2897	1	578921	A
SNP	427	2898	1	582813	C
SNP	428	2899	1	583186	C
SNP	429	2900	1	583703	C
SNP	430	2901	1	586064	T
SNP	431	2902	1	588333	C
SNP	432	2903	1	589859	T
SNP	433	2904	1	591715	G
SNP	434	2905	1	591746	G
SNP	435	2906	1	591879	C
SNP	436	2907	1	591890	A
SNP	437	2908	1	591892	G
SNP	438	2909	1	591894	T
SNP	439	2910	1	591899	C
SNP	440	2913	1	593052	C
SNP	441	2914	1	593063	G
SNP	442	2915	1	593086	A
SNP	443	2916	1	593090	A
SNP	444	2917	1	593133	T
SNP	445	2918	1	593150	A
SNP	446	2919	1	593170	T
SNP	447	2920	1	593183	T
INS	448	5204	1	593196	GGCGGT
SNP	449	2921	1	593197	G
SNP	450	2922	1	593330	C
SNP	451	2923	1	593337	C
SNP	452	2924	1	593413	G
SUB	453	2925,2926,2927	1	593429	3	CGA
SNP	454	2928	1	593437	C
SUB	455	2929,2930	1	593441	2	AT
SNP	456	2931	1	593444	C
SNP	457	2932	1	593489	G
SUB	458	2933,2934	1	593498	2	TG
SNP	459	2935	1	593502	G
SNP	460	2936	1	593510	G
SNP	461	2937	1	593516	G
SNP	462	2938	1	593547	A
SNP	463	2939	1	595500	G
SNP	464	2940	1	596232	T
SNP	465	2941	1	596532	C
SNP	466	2942	1	596537	C
SNP	467	2943	1	602874	T
SNP	468	2944	1	602950	T
SNP	469	2945	1	603172	T
SNP	470	2946	1	603448	C
SNP	471	2950	1	606710	A
SNP	472	2951	1	607375	C
SNP	473	2953	1	609616	G
SNP	474	2954	1	610689	A
SNP	475	2955	1	611939	T
SNP	476	2956	1	612537	G
SNP	477	2957	1	612541	C
SNP	478	2969	1	612643	A
SNP	479	2970	1	614090	C
SNP	480	2971	1	614550	T
SNP	481	2972	1	614952	C
SNP	482	2974	1	615402	A
SNP	483	2975	1	616007	G
SNP	484	2976	1	616198	C
SNP	485	2978	1	619451	T
SNP	486	2979	1	620386	A
SNP	487	2980	1	622433	C
SNP	488	2981	1	623500	T
SNP	489	2982	1	628350	C
SNP	490	2983	1	628356	G
SNP	491	2984	1	633014	C
SNP	492	2985	1	634273	C
SNP	493	2986	1	636826	G
DEL	494	2987	1	638548	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
SNP	495	2988	1	639070	T
SUB	496	2989,2990,2991	1	641884	3	GTC
SNP	497	2992	1	641997	A
SNP	498	2993	1	642657	A
SNP	499	2994	1	643395	T
SNP	500	2995	1	643539	C
SNP	501	2996	1	644612	C
SNP	502	2997	1	647960	A
SNP	503	2998	1	651492	T
SNP	504	2999	1	651780	A
SNP	505	3000	1	652519	A
SNP	506	3001	1	654279	T
SNP	507	3002	1	654452	A
SNP	508	3003	1	655304	G
SNP	509	3005	1	655875	C
SNP	510	3006	1	656960	A
SNP	511	3007	1	662123	T
SNP	512	3008	1	662761	C
SNP	513	3009	1	663921	A
SNP	514	3010	1	666236	T
DEL	515	5116,5212	1	666333	16	repeat_length=16	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCAACATGGTAACAAA
SNP	516	3011	1	666431	A
SNP	517	3012	1	667115	T
SNP	518	3013	1	667424	C
SNP	519	3014	1	668725	T
INS	520	3015,3016	1	669731	TG
SNP	521	3017	1	670601	G
SNP	522	3020	1	675635	G
SNP	523	3021	1	676383	T
SNP	524	3022	1	678410	T
SNP	525	3023	1	679503	A
SNP	526	3024	1	681759	C
SNP	527	3025	1	684996	C
SNP	528	3026	1	686754	G
SNP	529	3027	1	689365	C
SNP	530	3028	1	689500	G
SNP	531	3029	1	689707	G
SNP	532	3030	1	691379	A
SNP	533	3031	1	691874	G
SNP	534	3032	1	692747	G
SNP	535	3033	1	695627	C
SNP	536	3034	1	696014	A
SNP	537	3035	1	697917	G
SNP	538	3036	1	698183	T
SNP	539	3037	1	698640	G
SNP	540	3038	1	698699	G
SNP	541	3039	1	700412	A
SNP	542	3040	1	701753	C
SNP	543	3041	1	702320	T
SNP	544	3042	1	704881	C
SUB	545	3045,3046	1	705269	2	GT
SNP	546	3047	1	705275	T
SNP	547	3048	1	705395	T
SNP	548	3049	1	709541	T
SNP	549	3050	1	709956	G
SNP	550	3053	1	711045	C
SNP	551	3054	1	711779	C
SNP	552	3055	1	712621	C
SNP	553	3056	1	714324	G
SUB	554	3060,3061	1	714767	2	GT
SNP	555	3062	1	714773	T
SNP	556	3063	1	714834	A
SNP	557	3064	1	716329	T
SNP	558	3065	1	716834	T
SNP	559	3066	1	717072	C
SNP	560	3067	1	717575	C
SNP	561	3068	1	721855	T
SNP	562	3069	1	721858	C
SNP	563	3070	1	721950	G
INS	564	3071	1	727429	T
SNP	565	3072	1	729117	C
SNP	566	3073	1	729128	T
SNP	567	3074	1	729180	G
SNP	568	3075	1	729184	C
SNP	569	3076	1	729190	A
SNP	570	3077	1	729192	A
SNP	571	3078	1	729195	C
SNP	572	3079	1	729198	C
SNP	573	3080	1	729200	A
SNP	574	3081	1	729204	G
SUB	575	3082,3083	1	729206	2	TC
INS	576	3084,3085	1	729219	CT
SNP	577	3086	1	729226	A
SNP	578	3087	1	735219	A
SNP	579	3088	1	739352	C
SNP	580	3089	1	740669	A
SNP	581	3090	1	746620	T
SNP	582	3091	1	748604	T
SNP	583	3092	1	749432	C
SNP	584	3093	1	750925	C
DEL	585	5119,5216	1	751202	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AGGC
SNP	586	3094	1	751438	A
SNP	587	3095	1	752017	C
SNP	588	3096	1	752644	T
SNP	589	3097	1	753423	G
SNP	590	3098	1	753505	G
SNP	591	3099	1	755606	T
SNP	592	3100	1	756496	T
SNP	593	3101	1	757845	A
SNP	594	3103	1	758659	A
SNP	595	3104	1	760117	G
SNP	596	3105	1	760595	C
SNP	597	3106	1	763024	G
SNP	598	3107	1	764725	C
SNP	599	3108	1	767351	T
SNP	600	3109	1	770191	T
SNP	601	3110	1	770361	T
SNP	602	3111	1	770965	T
SNP	603	3113	1	777433	A
SNP	604	3114	1	777646	C
SNP	605	3115	1	778532	T
SNP	606	3116	1	778691	G
SNP	607	3117	1	779074	T
SNP	608	3118	1	784418	G
SNP	609	3119	1	787093	A
SNP	610	3120	1	788833	G
SNP	611	3121	1	790888	T
SNP	612	3122	1	790914	A
SNP	613	3123	1	792450	T
SNP	614	3124	1	793076	G
SNP	615	3125	1	794936	T
SNP	616	3126	1	795848	G
SNP	617	3127	1	796162	T
SNP	618	3129	1	803478	G
SNP	619	3130	1	805884	C
SNP	620	3131	1	807843	C
SNP	621	3132	1	808398	G
SNP	622	3133	1	809527	C
SNP	623	3134	1	809693	T
SNP	624	3136	1	812930	T
SNP	625	3137	1	813342	G
SNP	626	3138	1	814159	A
SNP	627	3139	1	814163	T
SNP	628	3141	1	816048	A
SNP	629	3142	1	816460	T
SNP	630	3144	1	817104	G
SNP	631	3145	1	824464	C
DEL	632	3146	1	824671	1
SNP	633	3147	1	824723	A
SNP	634	3148	1	825336	C
SNP	635	3149	1	826656	C
SNP	636	3150	1	827238	G
SNP	637	3151	1	828837	T
SNP	638	3152	1	829535	T
SNP	639	3153	1	831730	C
SNP	640	3154	1	833990	C
SNP	641	3155	1	836415	C
SUB	642	5121,5220	1	836658	76	GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
DEL	643	3156	1	838667	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
DEL	644	3157	1	841649	1
SNP	645	3158	1	842931	G
SNP	646	3160	1	843801	A
SNP	647	3161	1	846412	G
SNP	648	3162	1	847121	A
SNP	649	3163	1	848149	A
SNP	650	3164	1	849115	C
SNP	651	3165	1	852844	G
SNP	652	3166	1	853077	C
SNP	653	3167	1	853097	A
SNP	654	3168	1	853220	T
SNP	655	3169	1	854719	A
SNP	656	3170	1	855367	C
SNP	657	3171	1	857102	C
SNP	658	3172	1	857145	G
SNP	659	3173	1	858696	C
SNP	660	3174	1	864374	T
SNP	661	3175	1	865519	G
SNP	662	3176	1	867753	T
INS	663	3177	1	868100	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	664	3178	1	869732	C
SNP	665	3179	1	870117	G
SNP	666	3180	1	870365	C
INS	667	5222	1	872246	GGTAAA
SNP	668	3182	1	872390	T
SNP	669	3183	1	872460	C
SNP	670	3184	1	872476	T
SNP	671	3185	1	872996	T
SNP	672	3186	1	874467	T
SNP	673	3187	1	879216	C
SNP	674	3188	1	880998	G
SNP	675	3189	1	881837	C
DEL	676	3190	1	884331	1
SNP	677	3191	1	884999	C
SNP	678	3192	1	885016	A
SNP	679	3193	1	885034	A
SNP	680	3194	1	885044	G
SNP	681	3195	1	885056	G
SNP	682	3196	1	885077	T
SUB	683	3197,3198	1	885079	2	AT
SNP	684	3199	1	885084	G
SNP	685	3200	1	885086	G
SNP	686	3201	1	885089	A
SNP	687	3202	1	885095	T
SNP	688	3203	1	885098	G
SNP	689	3204	1	885115	T
SNP	690	3205	1	885137	C
SNP	691	3206	1	885206	A
SNP	692	3207	1	885210	C
SNP	693	3208	1	885213	T
SNP	694	3209	1	885236	T
SNP	695	3210	1	885257	G
SNP	696	3211	1	885260	T
SNP	697	3212	1	885272	G
SNP	698	3213	1	885288	C
SNP	699	3214	1	885311	C
SNP	700	3215	1	885315	A
SNP	701	3216	1	885380	A
SNP	702	3217	1	885441	G
SNP	703	3218	1	885448	A
SNP	704	3219	1	885470	A
SNP	705	3220	1	885500	T
DEL	706	3222,3223	1	885509	2
DEL	707	3224,3225	1	885511	2
SNP	708	3226	1	885520	T
SNP	709	3227	1	885525	G
SNP	710	3228	1	885530	T
SNP	711	3229	1	885542	G
SNP	712	3230	1	885558	C
SNP	713	3231	1	885563	G
SNP	714	3232	1	885565	A
SNP	715	3233	1	885574	A
SNP	716	3234	1	885622	A
SNP	717	3235	1	885651	T
SNP	718	3236	1	885654	C
SUB	719	3237,3238	1	885684	2	TG
INS	720	3239	1	885693	G
SUB	721	3240,3241	1	885697	2	C
SNP	722	3242	1	885717	T
SNP	723	3243	1	885727	A
SNP	724	3244	1	885743	C
SNP	725	3245	1	885777	G
SNP	726	3246	1	885795	A
SNP	727	3247	1	885799	G
SNP	728	3248	1	885832	T
SNP	729	3249	1	885849	G
SUB	730	3250,3251	1	885873	2	CG
SNP	731	3252	1	885885	T
SUB	732	3253,3254	1	885900	2	CT
SNP	733	3255	1	885931	G
SNP	734	3256	1	885949	C
SNP	735	3257	1	885951	A
SNP	736	3258	1	885960	C
SNP	737	3259	1	885975	G
SNP	738	3260	1	886071	T
SNP	739	3261	1	886083	C
SNP	740	3262	1	886095	T
SNP	741	3263	1	886104	T
SNP	742	3264	1	886119	T
SNP	743	3265	1	886131	C
SNP	744	3266	1	886144	A
SNP	745	3267	1	886149	G
SNP	746	3268	1	886233	T
SNP	747	3269	1	886263	T
SNP	748	3270	1	886272	T
SNP	749	3271	1	886277	C
SNP	750	3272	1	886290	A
SUB	751	3273,3274	1	886304	2	CT
SNP	752	3275	1	886318	T
SNP	753	3276	1	886326	T
SUB	754	3277,3278	1	886329	2	CA
SNP	755	3279	1	886335	T
SNP	756	3280	1	886355	A
SNP	757	3281	1	886366	C
SNP	758	3282	1	886368	T
SNP	759	3283	1	886392	A
SNP	760	3284	1	886404	C
SUB	761	3285,3286	1	886409	2	CA
SNP	762	3287	1	886422	T
SNP	763	3288	1	886428	G
SNP	764	3289	1	886430	C
SNP	765	3290	1	886434	C
SNP	766	3291	1	886485	T
SNP	767	3292	1	886500	T
SNP	768	3293	1	886503	G
SNP	769	3294	1	886521	T
SNP	770	3295	1	886527	C
SNP	771	3296	1	886543	C
SNP	772	3297	1	886559	T
SNP	773	3298	1	886581	T
SUB	774	3299,3300	1	886598	2	TG
SNP	775	3301	1	886605	T
SNP	776	3302	1	886608	T
SNP	777	3303	1	886611	T
SNP	778	3304	1	886618	T
SNP	779	3305	1	886630	G
SUB	780	3306,3307	1	886688	2	AA
SNP	781	3308	1	886696	G
SNP	782	3309	1	886701	T
SNP	783	3310	1	886714	T
SNP	784	3311	1	886717	C
SNP	785	3312	1	886723	C
SNP	786	3313	1	886725	C
SNP	787	3314	1	886731	G
SNP	788	3315	1	886734	C
SNP	789	3316	1	886742	G
SNP	790	3317	1	886751	C
SNP	791	3318	1	886766	T
SNP	792	3319	1	886770	T
SNP	793	3320	1	886789	A
SNP	794	3321	1	886818	C
SUB	795	3322,3323	1	886820	2	GT
SNP	796	3324	1	886824	A
SNP	797	3325	1	886851	T
SNP	798	3326	1	886860	C
SNP	799	3327	1	886875	A
SNP	800	3328	1	886890	G
SNP	801	3329	1	886899	G
SUB	802	3330,3331	1	886901	2	AA
SNP	803	3332	1	886909	C
SNP	804	3333	1	886914	T
SNP	805	3334	1	886931	T
SNP	806	3335	1	886950	T
SNP	807	3336	1	886966	G
SNP	808	3337	1	886970	C
SUB	809	3338,3339	1	886973	2	CG
SNP	810	3340	1	886983	G
SUB	811	3341,3342	1	886989	2	AT
SNP	812	3343	1	886992	G
SNP	813	3344	1	887007	T
SNP	814	3345	1	887009	G
SNP	815	3346	1	887014	A
SNP	816	3347	1	887028	G
SUB	817	3348,3349	1	887045	2	TA
SNP	818	3350	1	887061	T
SNP	819	3351	1	887076	C
SNP	820	3352	1	887096	C
SUB	821	3353,3354	1	887103	2	TG
SNP	822	3355	1	887106	C
SNP	823	3356	1	887108	T
SNP	824	3357	1	887118	C
SNP	825	3358	1	887130	C
SNP	826	3359	1	887133	G
SNP	827	3360	1	887145	T
SNP	828	3361	1	887151	G
SNP	829	3362	1	887154	T
SUB	830	3363,3364	1	887184	2	AG
SNP	831	3365	1	887190	C
SNP	832	3366	1	887205	T
SNP	833	3367	1	887230	C
SNP	834	3368	1	887271	C
SNP	835	3369	1	887305	C
SNP	836	3370	1	887314	T
SNP	837	3371	1	887319	T
SNP	838	3372	1	887322	C
SNP	839	3373	1	887325	T
SNP	840	3374	1	887335	G
SNP	841	3375	1	887356	A
SNP	842	3376	1	887363	G
SNP	843	3377	1	887374	A
SNP	844	3378	1	887406	T
SNP	845	3379	1	887421	C
SNP	846	3380	1	887457	A
SNP	847	3381	1	887476	T
SNP	848	3382	1	887481	A
SNP	849	3383	1	887484	A
SNP	850	3384	1	887489	G
SUB	851	3385,3386	1	887493	2	AA
SNP	852	3387	1	887497	C
SNP	853	3388	1	887505	C
SNP	854	3389	1	887517	G
SNP	855	3390	1	887526	A
SNP	856	3391	1	887529	A
SNP	857	3392	1	887531	G
SUB	858	3393,3394	1	887537	2	AG
SNP	859	3395	1	887541	T
SNP	860	3396	1	887544	T
SNP	861	3397	1	887557	C
SNP	862	3398	1	887565	A
SNP	863	3399	1	887580	C
SUB	864	3400,3401	1	887582	2	TG
SNP	865	3402	1	887586	C
SNP	866	3403	1	887589	C
SUB	867	3404,3405	1	887652	2	TT
SNP	868	3406	1	887679	G
SNP	869	3407	1	887697	A
SNP	870	3408	1	887700	G
DEL	871	3409	1	887723	1
INS	872	3410	1	887725	A
SNP	873	3411	1	887751	T
SNP	874	3412	1	887781	A
SNP	875	3413	1	887787	C
SNP	876	3414	1	887833	A
SNP	877	3415	1	887844	G
SNP	878	3416	1	887865	G
SNP	879	3417	1	887871	G
SNP	880	3418	1	887877	T
SNP	881	3419	1	887883	A
SNP	882	3420	1	887891	A
SNP	883	3421	1	887895	G
SNP	884	3422	1	887912	G
SNP	885	3423	1	887919	A
SNP	886	3424	1	887934	C
SNP	887	3425	1	887938	T
SNP	888	3426	1	887949	A
SNP	889	3427	1	887967	A
SNP	890	3428	1	887975	C
SNP	891	3429	1	887981	G
SNP	892	3430	1	888007	G
SUB	893	3431,3432	1	888012	2	CC
SNP	894	3433	1	888019	G
SNP	895	3434	1	888021	T
SNP	896	3435	1	888048	A
SNP	897	3436	1	888062	T
SNP	898	3437	1	888091	G
SNP	899	3438	1	888102	A
SNP	900	3439	1	888104	A
SNP	901	3440	1	888121	G
SNP	902	3441	1	888135	G
SNP	903	3442	1	888138	T
SNP	904	3443	1	888154	A
SNP	905	3444	1	888169	T
SUB	906	3445,3446	1	888172	2	GC
SNP	907	3447	1	888219	T
SNP	908	3448	1	888239	A
INS	909	3449	1	888251	T
SNP	910	3450	1	888267	A
SNP	911	3451	1	888272	A
SNP	912	3452	1	888283	T
SNP	913	3453	1	888316	C
SNP	914	3454	1	888340	C
SNP	915	3455	1	888343	T
SNP	916	3456	1	888364	G
SNP	917	3457	1	888373	G
SNP	918	3458	1	888388	C
SNP	919	3459	1	888391	C
SNP	920	3460	1	888400	T
SNP	921	3461	1	888409	A
SNP	922	3462	1	888420	C
SNP	923	3463	1	888425	A
SNP	924	3464	1	888447	A
SNP	925	3465	1	888451	C
SNP	926	3466	1	888509	C
SNP	927	3467	1	888515	C
SNP	928	3468	1	888547	T
SUB	929	3469,3470	1	888551	2	CA
SNP	930	3471	1	888559	A
SNP	931	3472	1	888681	T
DEL	932	3473	1	888742	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	933	3474	1	888783	G
SNP	934	3475	1	888792	T
SNP	935	3476	1	888845	T
SNP	936	3477	1	888848	T
SNP	937	3478	1	888866	T
SNP	938	3479	1	888871	C
SNP	939	3480	1	888937	T
SNP	940	3481	1	888974	C
SNP	941	3482	1	889016	T
SNP	942	3483	1	889020	T
SUB	943	3484,3485	1	889066	2	AA
SNP	944	3486	1	889078	A
SNP	945	3487	1	889086	G
SNP	946	3488	1	889247	T
SNP	947	3489	1	889340	G
SNP	948	3490	1	889349	G
SNP	949	3491	1	889538	C
SNP	950	3492	1	889759	T
SNP	951	3493	1	889780	C
SNP	952	3494	1	889924	C
SNP	953	3495	1	890431	A
SNP	954	3496	1	891559	T
SNP	955	3497	1	892304	G
SNP	956	3498	1	895966	A
SNP	957	3499	1	896279	G
SNP	958	3500	1	898386	C
SNP	959	3501	1	898391	C
SNP	960	3502	1	899038	C
SNP	961	3503	1	900009	G
SNP	962	3504	1	901970	C
SNP	963	3505	1	903940	G
SNP	964	3506	1	906906	A
SNP	965	3507	1	907621	T
SNP	966	3508	1	908100	C
SNP	967	3509	1	910569	G
SNP	968	3510	1	911081	G
INS	969	5225	1	915411	GAGAACAAA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GAGAACAAA
SNP	970	3513	1	917352	G
SNP	971	3514	1	917435	G
SNP	972	3515	1	917472	T
SNP	973	3516	1	926823	A
SNP	974	3517	1	929282	C
SNP	975	3518	1	929703	A
SNP	976	3519	1	929855	C
SNP	977	3520	1	931165	T
SNP	978	3523	1	933058	G
SNP	979	3524	1	934231	T
SNP	980	3525	1	934862	T
SNP	981	3526	1	935184	G
SNP	982	3527	1	937871	A
INS	983	3528	1	940135	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	984	3529	1	940485	G
SNP	985	3530	1	940718	C
SNP	986	3531	1	941099	C
SNP	987	3532	1	941900	A
SNP	988	3533	1	942112	T
SNP	989	3534	1	944187	G
INS	990	3535	1	944390	T
SNP	991	3536	1	944455	G
DEL	992	5122,5228	1	945038	1650
SNP	993	3537	1	947976	G
SNP	994	3538	1	948779	G
SNP	995	3539	1	950295	G
SNP	996	3540	1	950492	A
SNP	997	3541	1	951034	G
SNP	998	3542	1	953081	T
SNP	999	3543	1	953254	A
SNP	1000	3544	1	955347	T
DEL	1001	5123,5229	1	957814	1865
SNP	1002	3545	1	959890	G
SNP	1003	3546	1	962079	C
SNP	1004	3547	1	962369	A
SNP	1005	3548	1	964942	G
DEL	1006	3549	1	968255	1
SNP	1007	3550	1	968666	A
SNP	1008	3551	1	969191	A
SNP	1009	3552	1	970682	C
DEL	1010	3553	1	971561	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	1011	3554	1	972453	T
SNP	1012	3555	1	973054	C
SNP	1013	3556	1	976602	C
SNP	1014	3557	1	979163	T
SNP	1015	3558	1	980693	G
SNP	1016	3559	1	981154	C
SNP	1017	3560	1	982263	G
SNP	1018	3561	1	983217	G
SNP	1019	3562	1	983887	G
SNP	1020	3563	1	984002	C
DEL	1021	5124,5230	1	984927	3	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=12	repeat_seq=C
SNP	1022	3565	1	988496	G
SNP	1023	3566	1	991296	A
SNP	1024	3567	1	991456	C
SNP	1025	3568	1	993136	T
SNP	1026	3569	1	993657	G
SNP	1027	3570	1	994903	A
INS	1028	5231	1	995156	GTACTTCGT
SNP	1029	3571	1	997965	A
SNP	1030	3572	1	999684	T
SNP	1031	3573	1	1007748	C
SNP	1032	3574	1	1009345	A
SNP	1033	3575	1	1009493	T
SNP	1034	3576	1	1012286	C
SNP	1035	3577	1	1016142	C
SNP	1036	3578	1	1016479	G
SNP	1037	3579	1	1019215	C
SNP	1038	3580	1	1020190	C
SNP	1039	3581	1	1020477	T
SNP	1040	3582	1	1021624	T
SNP	1041	3583	1	1021996	C
SNP	1042	3584	1	1022127	A
SNP	1043	3585	1	1022219	C
DEL	1044	5125,5232	1	1023007	1249
SUB	1045	3586,3587	1	1024986	2	TT
SNP	1046	3588	1	1026167	G
SNP	1047	3589	1	1026237	A
SNP	1048	3590	1	1026300	T
SNP	1049	3591	1	1026444	T
SNP	1050	3627	1	1028231	C
SNP	1051	3628	1	1033910	A
SNP	1052	3629	1	1036444	A
SNP	1053	3630	1	1036822	G
SNP	1054	3631	1	1037414	T
SNP	1055	3632	1	1037700	A
SNP	1056	3633	1	1040499	G
SNP	1057	3634	1	1041846	C
SNP	1058	3635	1	1045502	G
SNP	1059	3637	1	1048725	T
SNP	1060	3638	1	1052721	C
SUB	1061	3639,3640	1	1053394	2	AA
SNP	1062	3641	1	1062657	G
SNP	1063	3642	1	1066211	G
SNP	1064	3643	1	1069119	G
SNP	1065	3644	1	1069941	A
SNP	1066	3645	1	1070907	G
SNP	1067	3646	1	1071698	A
SNP	1068	3647	1	1071804	A
SNP	1069	3648	1	1072100	T
SNP	1070	3649	1	1075673	C
SNP	1071	3650	1	1076588	A
SNP	1072	3651	1	1076955	G
SNP	1073	3652	1	1077128	C
SNP	1074	3653	1	1077449	T
SNP	1075	3654	1	1078849	T
SNP	1076	3655	1	1080981	A
SNP	1077	3656	1	1082541	G
SNP	1078	3657	1	1086923	C
SNP	1079	3659	1	1090832	C
SNP	1080	3660	1	1091342	G
SNP	1081	3661	1	1091442	G
SNP	1082	3662	1	1093567	G
DEL	1083	3663	1	1095214	1
SNP	1084	3664	1	1096614	G
SNP	1085	3665	1	1102037	A
SNP	1086	3666	1	1103183	C
SNP	1087	3667	1	1106553	T
SNP	1088	3668	1	1106842	A
SNP	1089	3669	1	1110294	T
SNP	1090	3670	1	1110606	T
SNP	1091	3671	1	1110727	T
SNP	1092	3672	1	1111111	T
SNP	1093	3673	1	1112553	T
SNP	1094	3674	1	1112734	T
SNP	1095	3675	1	1113544	C
SNP	1096	3676	1	1114297	C
SNP	1097	3677	1	1115370	G
SNP	1098	3678	1	1116692	C
SNP	1099	3679	1	1116766	G
SNP	1100	3680	1	1116772	A
SNP	1101	3681	1	1119899	T
SNP	1102	3682	1	1121897	G
SNP	1103	3683	1	1124233	A
SNP	1104	3684	1	1124341	G
SNP	1105	3685	1	1124600	T
SNP	1106	3686	1	1127540	A
SNP	1107	3687	1	1127652	A
SNP	1108	3688	1	1127965	T
SNP	1109	3689	1	1128621	A
SNP	1110	3690	1	1128944	T
DEL	1111	3691	1	1129487	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1112	3692	1	1131197	G
SNP	1113	3694	1	1132739	C
SNP	1114	3695	1	1138296	C
SNP	1115	3696	1	1139511	C
SNP	1116	3697	1	1141875	G
SNP	1117	3698	1	1145074	G
SNP	1118	3699	1	1150205	G
SNP	1119	3700	1	1151965	A
SNP	1120	3701	1	1152845	T
SNP	1121	3702	1	1154058	C
SNP	1122	3703	1	1155264	A
SNP	1123	3704	1	1155459	G
SNP	1124	3705	1	1157434	A
SNP	1125	3706	1	1159560	G
SNP	1126	3707	1	1159599	A
SNP	1127	3708	1	1159627	G
SNP	1128	3709	1	1160048	A
SNP	1129	3710	1	1161369	C
SNP	1130	3711	1	1162075	T
SNP	1131	3712	1	1162472	G
SNP	1132	3713	1	1162888	T
SNP	1133	3714	1	1163862	C
SNP	1134	3715	1	1164208	G
SNP	1135	3716	1	1164985	G
SNP	1136	3717	1	1165328	G
SNP	1137	3718	1	1166957	T
SNP	1138	3719	1	1172860	G
SNP	1139	3720	1	1173889	C
SNP	1140	3721	1	1176893	G
SNP	1141	3722	1	1179088	A
INS	1142	3723	1	1179856	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1143	3724	1	1180037	G
SNP	1144	3725	1	1180542	A
SNP	1145	3726	1	1180754	G
SNP	1146	3727	1	1181277	A
SNP	1147	3728	1	1183794	T
SNP	1148	3729	1	1185647	G
SNP	1149	3730	1	1187941	A
SNP	1150	3731	1	1188403	T
SNP	1151	3732	1	1188652	C
SNP	1152	3733	1	1189976	C
SNP	1153	3734	1	1190198	T
SNP	1154	3735	1	1193109	T
SNP	1155	3736	1	1194405	C
SNP	1156	3738	1	1194999	T
SNP	1157	3739	1	1195028	C
SNP	1158	3740	1	1195031	G
SNP	1159	3741	1	1195037	A
SNP	1160	3742	1	1195052	C
SNP	1161	3750	1	1197266	A
SNP	1162	3751	1	1203195	C
SNP	1163	3752	1	1204172	G
SNP	1164	3753	1	1207527	C
SNP	1165	3754	1	1213095	T
SNP	1166	3758	1	1215276	T
SNP	1167	3759	1	1216357	C
SNP	1168	3760	1	1217214	C
SNP	1169	3761	1	1217252	A
SNP	1170	3762	1	1218042	C
SNP	1171	3763	1	1218808	T
SNP	1172	3764	1	1218940	T
SNP	1173	3765	1	1219121	T
SNP	1174	3766	1	1220284	T
SNP	1175	3767	1	1221766	C
SNP	1176	3768	1	1222631	T
SNP	1177	3769	1	1222718	G
SNP	1178	3770	1	1224448	G
SNP	1179	3771	1	1225255	G
SNP	1180	3772	1	1225552	C
SNP	1181	3773	1	1226189	A
SNP	1182	3774	1	1227282	A
SNP	1183	3775	1	1231865	T
SNP	1184	3776	1	1233961	C
SNP	1185	3777	1	1234824	T
SNP	1186	3778	1	1236354	G
SNP	1187	3779	1	1237693	G
DEL	1188	3780	1	1237884	1
SNP	1189	3781	1	1238027	A
SNP	1190	3782	1	1238195	C
SNP	1191	3783	1	1238483	G
SNP	1192	3784	1	1238508	C
SNP	1193	3787	1	1243526	C
SNP	1194	3788	1	1244216	C
SNP	1195	3789	1	1245963	G
SNP	1196	3790	1	1247643	C
SNP	1197	3791	1	1247645	C
SNP	1198	3792	1	1247994	G
SNP	1199	3793	1	1248147	A
SNP	1200	3794	1	1248361	T
SNP	1201	3795	1	1249186	C
SNP	1202	3796	1	1250747	C
SNP	1203	3797	1	1251878	T
SNP	1204	3798	1	1251950	T
SNP	1205	3799	1	1252218	T
SNP	1206	3800	1	1252472	C
SNP	1207	3801	1	1252933	G
SNP	1208	3802	1	1253486	T
SNP	1209	3803	1	1255500	C
SNP	1210	3804	1	1256788	C
SNP	1211	3805	1	1257041	T
SNP	1212	3806	1	1257548	A
SNP	1213	3807	1	1258069	C
SNP	1214	3808	1	1260882	C
SNP	1215	3809	1	1263792	G
SNP	1216	3810	1	1266483	T
INS	1217	3811,3812	1	1267524	TG
SNP	1218	3813	1	1268233	G
SNP	1219	3814	1	1268401	C
SNP	1220	3815	1	1268468	G
SNP	1221	3816	1	1268554	T
SNP	1222	3817	1	1270277	A
SNP	1223	3818	1	1272994	C
SNP	1224	3819	1	1276187	G
SNP	1225	3820	1	1278490	A
SNP	1226	3821	1	1279190	G
SNP	1227	3822	1	1279819	G
SNP	1228	3823	1	1280297	T
SNP	1229	3824	1	1280507	G
SNP	1230	3825	1	1283736	C
SNP	1231	3826	1	1284678	G
SNP	1232	3827	1	1285265	C
SNP	1233	3828	1	1285283	C
SNP	1234	3829	1	1285295	T
SNP	1235	3830	1	1285312	A
SUB	1236	3831,3832,3833,3834	1	1285332	4	TTTG
SNP	1237	3835	1	1285403	C
SNP	1238	3836	1	1285409	G
SNP	1239	3837	1	1285443	C
SNP	1240	3838	1	1285445	C
SNP	1241	3845	1	1289636	T
SNP	1242	3846	1	1290262	T
SNP	1243	3856	1	1292582	G
SNP	1244	3857	1	1292591	A
SNP	1245	3858	1	1292594	G
SNP	1246	3859	1	1292645	G
SNP	1247	3860	1	1292663	C
SNP	1248	3861	1	1292722	C
SUB	1249	3862,3863,3864	1	1292765	3	GTA
SNP	1250	3865	1	1292773	C
SUB	1251	3866,3867	1	1292775	2	CC
SNP	1252	3868	1	1292785	A
SNP	1253	3869	1	1292802	A
SUB	1254	3870,3871	1	1292813	2	AA
SNP	1255	3872	1	1292826	C
SUB	1256	3873,3874	1	1292828	2	TC
SNP	1257	3875	1	1292835	A
SNP	1258	3876	1	1292849	G
SNP	1259	3877	1	1292851	A
SNP	1260	3878	1	1293890	T
SNP	1261	3879	1	1293915	A
SNP	1262	3880	1	1295237	G
SNP	1263	3881	1	1295512	C
SNP	1264	3882	1	1295951	C
SNP	1265	3883	1	1299379	A
SNP	1266	3884	1	1300014	G
INS	1267	5244	1	1301665	CACCTCACCT	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=3	repeat_seq=CACCT
INS	1268	5245	1	1301896	TAT
SNP	1269	3885	1	1302646	A
SNP	1270	3886	1	1302979	C
SNP	1271	3887	1	1303039	A
SNP	1272	3888	1	1303238	G
DEL	1273	5133,5246	1	1304016	3545
SNP	1274	3889	1	1307970	C
SNP	1275	3890	1	1309074	A
SNP	1276	3891	1	1310650	A
SNP	1277	3892	1	1310995	A
SNP	1278	3894	1	1313697	T
SNP	1279	3895	1	1314710	G
SNP	1280	3896	1	1316317	A
SNP	1281	3897	1	1317357	T
SNP	1282	3898	1	1317616	T
SNP	1283	3899	1	1319579	G
SNP	1284	3900	1	1321668	C
SNP	1285	3901	1	1322022	C
SNP	1286	3903	1	1322957	G
SNP	1287	3904	1	1324714	G
SNP	1288	3905	1	1325078	T
SNP	1289	3906	1	1328869	G
SNP	1290	3907	1	1329325	G
SNP	1291	3908	1	1330393	A
SNP	1292	3909	1	1331635	A
SNP	1293	3910	1	1331889	C
SNP	1294	3911	1	1332897	G
SNP	1295	3912	1	1333818	G
SNP	1296	3913	1	1335529	G
SNP	1297	3914	1	1335532	A
SNP	1298	3915	1	1336932	G
SNP	1299	3916	1	1339144	T
SNP	1300	3917	1	1340809	C
SNP	1301	3918	1	1341473	C
SNP	1302	3919	1	1343029	A
SNP	1303	3921	1	1345383	C
SNP	1304	3922	1	1346226	G
SNP	1305	3923	1	1348600	A
SNP	1306	3924	1	1350476	C
SNP	1307	3925	1	1354110	T
SNP	1308	3926	1	1355733	T
SNP	1309	3927	1	1356269	T
SNP	1310	3928	1	1357179	G
SNP	1311	3929	1	1358340	T
SNP	1312	3930	1	1359588	A
SNP	1313	3931	1	1360362	A
SNP	1314	3932	1	1362845	A
INS	1315	3933,3934	1	1363190	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	1316	3935	1	1363407	T
SNP	1317	3936	1	1365856	T
SNP	1318	3937	1	1366186	C
SNP	1319	3938	1	1366770	G
SNP	1320	3939	1	1370003	C
SNP	1321	3940	1	1371086	T
SNP	1322	3941	1	1374971	T
SNP	1323	3942	1	1378912	C
SNP	1324	3943	1	1379220	G
SNP	1325	3944	1	1380836	C
SNP	1326	3945	1	1382579	T
SNP	1327	3946	1	1382788	A
INS	1328	3947	1	1382896	G
SNP	1329	3948	1	1384097	C
SNP	1330	3949	1	1385245	A
SNP	1331	3950	1	1387454	C
INS	1332	5249	1	1388607	TGCCT	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=4	repeat_seq=TGCCT
INS	1333	5250	1	1388736	CCCAACTTA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CCCAACTTA
DEL	1334	5134,5252	1	1392146	603
INS	1335	3958	1	1393164	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	1336	3959	1	1393272	T
SNP	1337	3960	1	1393650	C
SNP	1338	3961	1	1393775	C
SNP	1339	3962	1	1394465	C
SNP	1340	3963	1	1394918	G
SNP	1341	3964	1	1396543	G
SNP	1342	3965	1	1396607	C
SNP	1343	3966	1	1396783	T
SNP	1344	3967	1	1396884	G
SNP	1345	3968	1	1397171	A
DEL	1346	5135,5253	1	1397390	849
SNP	1347	3969	1	1402657	C
SNP	1348	3970	1	1404121	A
SNP	1349	3971	1	1408594	G
SNP	1350	3972	1	1408998	C
SNP	1351	3973	1	1412466	A
SNP	1352	3974	1	1413143	T
SNP	1353	3975	1	1413262	C
SNP	1354	3977	1	1415015	G
SNP	1355	3978	1	1415274	G
SNP	1356	3979	1	1418817	T
SNP	1357	3980	1	1419242	G
SNP	1358	3983	1	1421431	C
SNP	1359	3984	1	1424390	C
SNP	1360	3985	1	1425542	T
SNP	1361	3986	1	1425592	T
SNP	1362	3987	1	1426004	C
SNP	1363	3988	1	1426168	A
SNP	1364	3989	1	1426717	A
SNP	1365	3990	1	1427639	G
SNP	1366	3991	1	1428381	G
SNP	1367	3992	1	1430622	A
SNP	1368	3993	1	1431934	T
SNP	1369	3994	1	1432371	A
SNP	1370	3995	1	1432708	A
SNP	1371	3996	1	1434312	G
DEL	1372	5137,5255	1	1436155	10
SNP	1373	3997	1	1436439	C
SNP	1374	3998	1	1437549	G
DEL	1375	3999,4000	1	1440828	2	repeat_length=1	repeat_new_copies=3	repeat_ref_copies=5	repeat_seq=G
SNP	1376	4001	1	1443487	C
SNP	1377	4002	1	1443836	A
SNP	1378	4005	1	1446432	G
SNP	1379	4006	1	1446489	C
SNP	1380	4007	1	1447244	T
SNP	1381	4008	1	1448751	C
SNP	1382	4015	1	1450556	T
SNP	1383	4016	1	1450560	C
SNP	1384	4017	1	1450562	T
SNP	1385	4018	1	1450568	T
SNP	1386	4019	1	1450574	T
SNP	1387	4020	1	1450580	T
SNP	1388	4021	1	1450583	A
SNP	1389	4022	1	1450589	G
SNP	1390	4023	1	1450595	T
SNP	1391	4024	1	1450637	A
SNP	1392	4025	1	1450657	A
INS	1393	4026	1	1450704	T
SUB	1394	4027,4028	1	1450705	2	GA
SUB	1395	4029,4030	1	1450709	2	AA
SUB	1396	4031,4032,4033	1	1450713	2	TCA
SNP	1397	4034	1	1450721	T
SNP	1398	4035	1	1450749	C
SUB	1399	4036,4037	1	1450788	2	TA
SNP	1400	4038	1	1450791	C
SNP	1401	4039	1	1450801	T
SNP	1402	4040	1	1450837	C
SUB	1403	5139,5257	1	1450874	737	TACGTGCTTGAATTTATGCTTACAT
SNP	1404	4041	1	1451613	T
SNP	1405	4042	1	1451673	C
SNP	1406	4043	1	1451687	C
SNP	1407	4044	1	1451693	G
SNP	1408	4045	1	1451721	T
SUB	1409	4046,4047	1	1451727	2	TC
SNP	1410	4048	1	1451734	C
SNP	1411	4049	1	1451738	T
SNP	1412	4050	1	1451742	A
SUB	1413	4051,4052,4053	1	1451745	3	GAA
SNP	1414	4054	1	1451756	A
SNP	1415	4055	1	1451817	A
SNP	1416	4056	1	1453151	T
SNP	1417	4057	1	1456114	G
SNP	1418	4058	1	1456716	C
SNP	1419	4059	1	1457122	T
SNP	1420	4061	1	1457614	G
SNP	1421	4062	1	1457775	C
SNP	1422	4063	1	1458876	C
SNP	1423	4064	1	1459489	A
SNP	1424	4065	1	1460406	T
SNP	1425	4066	1	1461349	C
SNP	1426	4067	1	1462025	C
SNP	1427	4068	1	1462133	C
SNP	1428	4069	1	1464401	G
SNP	1429	4070	1	1466308	T
SNP	1430	4071	1	1466399	A
SNP	1431	4072	1	1466929	C
SNP	1432	4073	1	1468710	T
SNP	1433	4074	1	1469221	A
SNP	1434	4075	1	1469374	G
SNP	1435	4076	1	1470247	A
SNP	1436	4077	1	1470310	G
SNP	1437	4078	1	1470949	C
SNP	1438	4079	1	1472236	T
SNP	1439	4080	1	1472383	T
SNP	1440	4081	1	1473425	T
SNP	1441	4082	1	1473542	T
DEL	1442	5140,5258	1	1473972	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCTA
DEL	1443	4083	1	1476256	1
SNP	1444	4084	1	1477072	A
DEL	1445	4085	1	1477236	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	1446	4086	1	1478171	T
SNP	1447	4087	1	1480595	C
SNP	1448	4088	1	1480640	G
SNP	1449	4089	1	1482246	C
SNP	1450	4090	1	1483135	C
SNP	1451	4091	1	1486589	A
SNP	1452	4092	1	1486655	C
SNP	1453	4093	1	1487073	C
SNP	1454	4094	1	1488358	T
SNP	1455	4097	1	1489207	G
SNP	1456	4098	1	1489813	T
SNP	1457	4102	1	1491288	C
SNP	1458	4103	1	1492064	T
SNP	1459	4104	1	1492203	G
SNP	1460	4105	1	1493966	A
SNP	1461	4106	1	1494626	A
SNP	1462	4107	1	1495017	A
SNP	1463	4108	1	1495901	T
INS	1464	5259	1	1496280	TTT
INS	1465	4109	1	1496917	T
INS	1466	4110	1	1497872	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	1467	4111	1	1499513	C
SNP	1468	4112	1	1499560	T
SNP	1469	4113	1	1500199	C
SNP	1470	4114	1	1500960	T
SNP	1471	4115	1	1501203	A
DEL	1472	5142,5260	1	1501452	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=ATT
SNP	1473	4116	1	1502727	C
SNP	1474	4117	1	1504542	A
SNP	1475	4118	1	1504581	G
SNP	1476	4119	1	1504722	T
SNP	1477	4120	1	1505438	G
SNP	1478	4121	1	1505868	C
SNP	1479	4123	1	1508143	T
SNP	1480	4124	1	1509678	C
SNP	1481	4125	1	1509837	C
SNP	1482	4126	1	1512293	C
SNP	1483	4127	1	1512296	C
SNP	1484	4128	1	1513392	G
SNP	1485	4129	1	1514002	C
SNP	1486	4130	1	1516015	G
SNP	1487	4131	1	1516654	G
INS	1488	4132	1	1518424	T
SNP	1489	4133	1	1519179	T
SNP	1490	4134	1	1519813	A
SNP	1491	4135	1	1519906	T
SNP	1492	4136	1	1520992	C
SNP	1493	4137	1	1522037	G
SNP	1494	4138	1	1522692	T
SNP	1495	4139	1	1524459	T
SNP	1496	4140	1	1524546	T
SNP	1497	4141	1	1526281	T
SNP	1498	4144	1	1531488	G
SNP	1499	4145	1	1531873	T
SNP	1500	4146	1	1532385	G
SNP	1501	4147	1	1532909	T
SNP	1502	4148	1	1532997	T
SNP	1503	4149	1	1533644	A
SNP	1504	4150	1	1535354	T
SNP	1505	4151	1	1535841	C
SNP	1506	4153	1	1536982	A
SNP	1507	4154	1	1537737	G
SNP	1508	4155	1	1540413	G
SNP	1509	4156	1	1540491	G
SNP	1510	4157	1	1541155	C
SNP	1511	4158	1	1542342	T
SNP	1512	4159	1	1542388	G
SUB	1513	4160,4161	1	1543088	2	GT
SNP	1514	4162	1	1545142	A
SNP	1515	4163	1	1547773	A
SNP	1516	4164	1	1548942	G
SNP	1517	4166	1	1551159	A
SNP	1518	4167	1	1553921	G
DEL	1519	5143,5263	1	1554871	3
SNP	1520	4168	1	1555758	T
SNP	1521	4169	1	1555843	G
SNP	1522	4170	1	1557962	C
SNP	1523	4171	1	1558577	A
SNP	1524	4172	1	1558978	T
SNP	1525	4173	1	1559149	T
SNP	1526	4174	1	1559413	C
SNP	1527	4175	1	1561201	T
SNP	1528	4176	1	1561994	G
SUB	1529	5144,5264	1	1562259	947	CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
SNP	1530	4177	1	1564248	G
SNP	1531	4178	1	1564464	A
SNP	1532	4179	1	1565115	A
SNP	1533	4180	1	1566336	A
SNP	1534	4181	1	1567326	C
SNP	1535	4182	1	1568091	T
SNP	1536	4183	1	1568288	T
SNP	1537	4184	1	1568502	T
SNP	1538	4185	1	1569308	G
SNP	1539	4186	1	1570379	A
SNP	1540	4189	1	1577284	C
SNP	1541	4190	1	1579637	C
SNP	1542	4191	1	1580668	G
SNP	1543	4192	1	1581174	A
SNP	1544	4193	1	1581314	T
SNP	1545	4194	1	1584971	G
SNP	1546	4195	1	1585519	A
SNP	1547	4196	1	1586543	T
SNP	1548	4197	1	1587457	A
SNP	1549	4198	1	1589465	C
SNP	1550	4199	1	1596013	C
SNP	1551	4200	1	1596339	T
SNP	1552	4201	1	1596542	C
SNP	1553	4202	1	1597262	A
SNP	1554	4203	1	1600387	C
SNP	1555	4205	1	1601021	T
SNP	1556	4206	1	1601548	G
SNP	1557	4207	1	1601858	C
SNP	1558	4208	1	1602586	A
SNP	1559	4209	1	1603010	C
SNP	1560	4210	1	1604050	T
SNP	1561	4211	1	1604052	G
SNP	1562	4212	1	1604056	T
SNP	1563	4213	1	1604103	G
SNP	1564	4214	1	1604106	C
SNP	1565	4215	1	1607020	C
SNP	1566	4216	1	1608408	C
SNP	1567	4224	1	1611523	A
SNP	1568	4225	1	1613165	G
SNP	1569	4226	1	1613639	T
SNP	1570	4227	1	1614268	C
SNP	1571	4229	1	1615823	G
SNP	1572	4230	1	1617023	G
SNP	1573	4231	1	1618046	C
SNP	1574	4232	1	1618393	T
SNP	1575	4233	1	1619502	G
SNP	1576	4234	1	1621305	G
SNP	1577	4235	1	1623097	T
SNP	1578	4237	1	1624653	G
SNP	1579	4238	1	1624860	G
SNP	1580	4239	1	1628424	T
SNP	1581	4240	1	1628475	A
SNP	1582	4241	1	1628842	G
SNP	1583	4242	1	1629063	C
SNP	1584	4243	1	1630210	G
SNP	1585	4244	1	1632982	G
SNP	1586	4245	1	1633728	A
SNP	1587	4246	1	1634127	G
SNP	1588	4247	1	1634266	T
SNP	1589	4248	1	1634637	T
SNP	1590	4250	1	1635055	C
SNP	1591	4251	1	1636555	A
SNP	1592	4252	1	1636826	G
SNP	1593	4253	1	1638977	A
SNP	1594	4254	1	1638999	C
SNP	1595	4255	1	1639716	T
SNP	1596	4256	1	1643250	T
SNP	1597	4257	1	1647699	C
SNP	1598	4258	1	1647936	G
SNP	1599	4259	1	1648375	A
SNP	1600	4260	1	1649959	T
SNP	1601	4261	1	1653969	A
SNP	1602	4262	1	1654036	T
SNP	1603	4263	1	1654905	T
SNP	1604	4264	1	1655373	C
SNP	1605	4265	1	1655414	A
INS	1606	4266	1	1657904	T
SNP	1607	4267	1	1658680	T
SNP	1608	4268	1	1659741	T
SNP	1609	4269	1	1659756	G
SNP	1610	4270	1	1660131	C
SNP	1611	4271	1	1661695	C
SNP	1612	4273	1	1664131	G
SNP	1613	4274	1	1667712	C
SNP	1614	4275	1	1667962	A
SNP	1615	4276	1	1673707	C
SNP	1616	4277	1	1674362	A
SNP	1617	4278	1	1675280	G
SNP	1618	4279	1	1675530	T
SNP	1619	4280	1	1677754	C
SNP	1620	4281	1	1677933	A
SNP	1621	4282	1	1679095	A
SNP	1622	4283	1	1680930	C
SNP	1623	4284	1	1681018	G
SNP	1624	4285	1	1681161	C
SNP	1625	4286	1	1681957	C
SNP	1626	4287	1	1684002	A
SNP	1627	4288	1	1688038	G
SNP	1628	4289	1	1690089	A
SNP	1629	4290	1	1690409	A
SNP	1630	4291	1	1692038	A
SNP	1631	4294	1	1692530	A
SNP	1632	4295	1	1693184	T
SNP	1633	4296	1	1693285	G
SNP	1634	4297	1	1697551	T
SNP	1635	4298	1	1698090	T
SNP	1636	4299	1	1699651	T
SNP	1637	4300	1	1700895	C
SNP	1638	4301	1	1701986	G
SNP	1639	4304	1	1708448	T
SNP	1640	4305	1	1708808	T
SNP	1641	4306	1	1709594	T
SNP	1642	4309	1	1714210	G
SNP	1643	4310	1	1715939	G
SNP	1644	4311	1	1716571	G
SNP	1645	4312	1	1717735	G
SNP	1646	4314	1	1721456	G
SNP	1647	4315	1	1724445	A
SNP	1648	4316	1	1729530	T
SNP	1649	4317	1	1729569	A
SNP	1650	4318	1	1731720	A
SNP	1651	4319	1	1733166	A
SNP	1652	4320	1	1734419	G
SNP	1653	4321	1	1737612	C
SNP	1654	4322	1	1738903	C
SNP	1655	4323	1	1740334	A
SNP	1656	4324	1	1740971	A
SNP	1657	4325	1	1741759	A
SNP	1658	4326	1	1752284	C
SNP	1659	4327	1	1753524	C
SNP	1660	4328	1	1754208	G
SNP	1661	4329	1	1755700	A
SNP	1662	4330	1	1756457	C
SNP	1663	4331	1	1756932	A
SNP	1664	4332	1	1757807	C
SNP	1665	4333	1	1761344	A
SNP	1666	4334	1	1763653	G
SNP	1667	4335	1	1763892	G
SNP	1668	4336	1	1764941	A
DEL	1669	4337,4338	1	1765118	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	1670	4339	1	1766825	T
SNP	1671	4340	1	1772070	G
SNP	1672	4341	1	1772121	A
SNP	1673	4342	1	1772741	T
SNP	1674	4343	1	1773041	T
SNP	1675	4344	1	1774438	T
SNP	1676	4345	1	1775053	A
SNP	1677	4346	1	1775491	G
SNP	1678	4347	1	1775854	A
DEL	1679	5146,5269	1	1776736	1291
SNP	1680	4348	1	1782324	T
SNP	1681	4349	1	1783035	C
SNP	1682	4350	1	1783506	C
SNP	1683	4351	1	1784394	G
SNP	1684	4352	1	1784420	C
SNP	1685	4353	1	1785201	A
SNP	1686	4354	1	1786470	C
SNP	1687	4355	1	1786627	A
SNP	1688	4356	1	1787239	G
SNP	1689	4357	1	1787304	T
SNP	1690	4358	1	1790468	A
DEL	1691	4359	1	1791869	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1692	4360	1	1794646	T
SNP	1693	4361	1	1796180	G
SNP	1694	4362	1	1796284	G
SNP	1695	4363	1	1798074	A
SNP	1696	4364	1	1798140	C
SNP	1697	4365	1	1798632	C
SNP	1698	4366	1	1798657	A
SNP	1699	4367	1	1800067	A
SNP	1700	4368	1	1800187	C
SNP	1701	4369	1	1800708	A
SNP	1702	4370	1	1801539	A
SNP	1703	4371	1	1803557	C
SNP	1704	4372	1	1803960	C
SNP	1705	4373	1	1805450	G
SNP	1706	4374	1	1806158	C
SNP	1707	4375	1	1806328	T
SNP	1708	4376	1	1806393	A
DEL	1709	4377	1	1808340	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1710	4378	1	1808520	C
SNP	1711	4379	1	1809672	T
SNP	1712	4380	1	1810623	A
SNP	1713	4381	1	1811760	C
SNP	1714	4382	1	1819535	A
SNP	1715	4385	1	1825989	G
SNP	1716	4390	1	1828714	G
SNP	1717	4391	1	1829010	G
SNP	1718	4392	1	1829582	T
SNP	1719	4393	1	1831221	C
SNP	1720	4394	1	1832289	C
SNP	1721	4395	1	1833381	G
SNP	1722	4396	1	1840594	G
SNP	1723	4397	1	1844458	G
SNP	1724	4398	1	1846996	T
SNP	1725	4399	1	1847633	C
SNP	1726	4400	1	1847846	G
SNP	1727	4401	1	1849114	A
SNP	1728	4402	1	1849870	T
SNP	1729	4403	1	1852357	G
SNP	1730	4404	1	1854919	C
SNP	1731	4405	1	1857672	G
SNP	1732	4406	1	1860029	A
SNP	1733	4407	1	1860329	A
SNP	1734	4408	1	1860337	A
SNP	1735	4409	1	1860523	T
SNP	1736	4410	1	1862194	G
SNP	1737	4411	1	1862251	G
SNP	1738	4412	1	1862352	C
SNP	1739	4413	1	1863196	C
SNP	1740	4414	1	1863902	C
SNP	1741	4415	1	1865102	G
SNP	1742	4416	1	1872535	G
SNP	1743	4417	1	1872538	A
SNP	1744	4418	1	1872591	C
SNP	1745	4419	1	1872630	G
SNP	1746	4420	1	1874570	C
SNP	1747	4421	1	1874870	T
SNP	1748	4422	1	1875288	G
SNP	1749	4423	1	1875304	A
SNP	1750	4424	1	1877293	G
SNP	1751	4425	1	1877441	A
SNP	1752	4426	1	1878296	A
SNP	1753	4427	1	1879029	T
SNP	1754	4428	1	1879647	A
SNP	1755	4429	1	1880949	C
SNP	1756	4430	1	1881975	G
SNP	1757	4431	1	1883194	G
SNP	1758	4432	1	1883242	T
SNP	1759	4434	1	1886961	C
SNP	1760	4435	1	1887018	G
SNP	1761	4436	1	1887072	T
SNP	1762	4437	1	1887445	G
SNP	1763	4438	1	1889239	C
SNP	1764	4439	1	1889583	A
SNP	1765	4440	1	1889794	G
SNP	1766	4441	1	1891183	T
SNP	1767	4442	1	1891416	C
SNP	1768	4443	1	1892810	A
SNP	1769	4444	1	1894009	C
SNP	1770	4445	1	1897400	G
SNP	1771	4446	1	1899730	C
SNP	1772	4447	1	1899768	T
SNP	1773	4448	1	1900823	A
SNP	1774	4449	1	1901821	T
SNP	1775	4450	1	1904857	G
SNP	1776	4451	1	1905765	A
SNP	1777	4452	1	1908830	A
SNP	1778	4453	1	1909126	T
SNP	1779	4454	1	1909292	T
SNP	1780	4455	1	1909424	G
SNP	1781	4456	1	1910277	G
SNP	1782	4457	1	1910673	A
SNP	1783	4458	1	1910953	C
SNP	1784	4459	1	1911433	G
SNP	1785	4460	1	1914153	T
SNP	1786	4461	1	1914156	G
SNP	1787	4462	1	1914917	G
SNP	1788	4464	1	1916400	G
SNP	1789	4465	1	1916703	T
SNP	1790	4466	1	1917311	G
SNP	1791	4467	1	1918143	T
SNP	1792	4468	1	1918857	G
SNP	1793	4469	1	1919363	T
SNP	1794	4470	1	1919475	A
SNP	1795	4472	1	1921045	A
SNP	1796	4473	1	1923792	A
SNP	1797	4476	1	1926796	G
SNP	1798	4477	1	1926837	C
SNP	1799	4478	1	1927801	G
SNP	1800	4479	1	1928313	G
SNP	1801	4480	1	1930299	G
DEL	1802	4481	1	1930364	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	1803	4482	1	1931771	G
INS	1804	4483	1	1934467	T
SNP	1805	4484	1	1935391	C
SNP	1806	4485	1	1935761	A
SNP	1807	4486	1	1936209	A
SNP	1808	4487	1	1937734	A
DEL	1809	4489	1	1939614	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
INS	1810	5280	1	1940768	ATT
SNP	1811	4493	1	1943266	T
SNP	1812	4495	1	1943864	T
SNP	1813	4496	1	1945178	G
SNP	1814	4497	1	1945262	T
SNP	1815	4498	1	1945451	C
SNP	1816	4499	1	1947028	A
SNP	1817	4500	1	1947404	G
SNP	1818	4501	1	1948328	A
SNP	1819	4502	1	1949174	A
SNP	1820	4503	1	1949589	G
SNP	1821	4504	1	1950783	T
SNP	1822	4505	1	1951773	G
SNP	1823	4506	1	1952916	T
SNP	1824	4507	1	1954421	G
SNP	1825	4508	1	1954870	C
SNP	1826	4509	1	1955520	A
SNP	1827	4510	1	1956731	A
SNP	1828	4511	1	1957143	G
SNP	1829	4512	1	1958927	A
SNP	1830	4513	1	1959112	C
SNP	1831	4514	1	1959569	G
SNP	1832	4515	1	1961060	C
SNP	1833	4516	1	1961088	T
SNP	1834	4517	1	1961454	T
SNP	1835	4518	1	1961458	C
SNP	1836	4519	1	1962046	C
INS	1837	4520	1	1962672	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	1838	4521	1	1962800	G
SNP	1839	4522	1	1964951	T
SNP	1840	4523	1	1965158	C
SNP	1841	4524	1	1966195	C
SNP	1842	4525	1	1967048	C
SNP	1843	4526	1	1969104	A
SNP	1844	4527	1	1970029	T
SNP	1845	4528	1	1971573	A
SNP	1846	4529	1	1972170	C
SNP	1847	4530	1	1972514	G
SNP	1848	4531	1	1972860	C
SNP	1849	4532	1	1972881	C
SNP	1850	4533	1	1972905	C
SNP	1851	4534	1	1972915	C
SNP	1852	4535	1	1972936	C
SNP	1853	4536	1	1972959	G
SNP	1854	4537	1	1972971	C
SNP	1855	4538	1	1972998	C
SUB	1856	4539,4540	1	1973004	2	GC
SNP	1857	4541	1	1973007	G
SNP	1858	4542	1	1973043	C
SNP	1859	4543	1	1973048	A
SNP	1860	4544	1	1973079	T
INS	1861	4545,4546	1	1973089	TC
SNP	1862	4547	1	1973093	T
DEL	1863	4548	1	1973102	1
SNP	1864	4549	1	1973238	A
SNP	1865	4550	1	1973298	T
SNP	1866	4551	1	1973304	A
SNP	1867	4552	1	1973319	A
SNP	1868	4553	1	1973376	T
SNP	1869	4554	1	1973388	G
SNP	1870	4555	1	1973415	T
SNP	1871	4556	1	1973418	T
SNP	1872	4557	1	1973424	C
SNP	1873	4558	1	1973463	G
SNP	1874	4559	1	1973622	T
SNP	1875	4560	1	1973652	G
SNP	1876	4561	1	1973667	T
SNP	1877	4562	1	1973673	T
SNP	1878	4563	1	1973703	T
SNP	1879	4564	1	1973745	T
SNP	1880	4565	1	1973775	C
SNP	1881	4566	1	1973880	C
SNP	1882	4567	1	1973883	T
SNP	1883	4568	1	1973919	G
SNP	1884	4569	1	1973946	C
SNP	1885	4570	1	1974026	T
SNP	1886	4571	1	1974083	A
SNP	1887	4572	1	1974163	A
SNP	1888	4573	1	1974191	G
SNP	1889	4574	1	1974209	T
SNP	1890	4575	1	1974219	T
SNP	1891	4576	1	1974242	C
SNP	1892	4577	1	1974257	C
SNP	1893	4578	1	1974263	C
SNP	1894	4579	1	1974275	G
SNP	1895	4580	1	1974296	C
SNP	1896	4581	1	1974320	C
SNP	1897	4582	1	1974344	A
SNP	1898	4583	1	1974367	C
SNP	1899	4584	1	1974470	C
SNP	1900	4585	1	1974491	C
SNP	1901	4586	1	1974497	C
SNP	1902	4587	1	1974536	G
SNP	1903	4588	1	1974540	G
SNP	1904	4589	1	1974569	T
SNP	1905	4590	1	1974608	C
SNP	1906	4591	1	1974611	G
SNP	1907	4592	1	1974620	T
SNP	1908	4593	1	1974629	T
SNP	1909	4594	1	1974636	T
SNP	1910	4595	1	1974647	G
SNP	1911	4596	1	1974656	T
SNP	1912	4597	1	1974710	G
SNP	1913	4598	1	1974719	A
SNP	1914	4599	1	1974737	G
SNP	1915	4600	1	1974800	T
SNP	1916	4601	1	1974815	T
SNP	1917	4602	1	1974839	A
SNP	1918	4603	1	1974875	G
SNP	1919	4604	1	1974899	T
SNP	1920	4605	1	1974902	C
SNP	1921	4606	1	1974932	G
SNP	1922	4607	1	1974968	T
SNP	1923	4608	1	1974983	T
INS	1924	4609	1	1975050	A
DEL	1925	4610	1	1975057	1
SNP	1926	4611	1	1975059	C
SNP	1927	4612	1	1975064	A
INS	1928	4613	1	1975071	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1929	4614	1	1975080	G
SUB	1930	4615,4616	1	1975082	2	GA
SUB	1931	4617,4618	1	1975106	1	CG
SNP	1932	4619	1	1975108	G
SNP	1933	4620	1	1975112	A
SUB	1934	4623,4624	1	1975168	2	GG
SNP	1935	4631	1	1975198	A
SNP	1936	4632	1	1975201	A
SNP	1937	4633	1	1975228	T
SNP	1938	4634	1	1975231	C
SNP	1939	4635	1	1975243	T
SNP	1940	4636	1	1975255	C
SNP	1941	4637	1	1975284	C
SNP	1942	4638	1	1975291	T
SNP	1943	4639	1	1975293	A
SNP	1944	4640	1	1975364	G
SNP	1945	4641	1	1975382	A
SNP	1946	4642	1	1975427	A
SNP	1947	4643	1	1975433	C
SNP	1948	4644	1	1975484	T
SNP	1949	4645	1	1975550	T
SNP	1950	4646	1	1975556	G
SNP	1951	4647	1	1975559	G
SNP	1952	4648	1	1975586	A
SNP	1953	4649	1	1975598	G
SNP	1954	4650	1	1975601	G
SNP	1955	4651	1	1975649	G
SNP	1956	4652	1	1975730	C
SNP	1957	4653	1	1975739	C
SNP	1958	4654	1	1975751	C
SNP	1959	4655	1	1975760	G
SNP	1960	4656	1	1975805	C
SNP	1961	4657	1	1975916	A
SNP	1962	4658	1	1975949	T
SNP	1963	4659	1	1975982	T
SNP	1964	4660	1	1975997	C
SNP	1965	4661	1	1976057	T
SNP	1966	4662	1	1976071	A
SNP	1967	4663	1	1976075	C
SNP	1968	4664	1	1976114	T
SNP	1969	4665	1	1976177	C
SNP	1970	4666	1	1976198	C
SNP	1971	4667	1	1976228	C
SNP	1972	4668	1	1976309	T
SNP	1973	4669	1	1976428	C
SNP	1974	4670	1	1976483	G
SNP	1975	4671	1	1976498	G
SNP	1976	4672	1	1976603	C
SNP	1977	4673	1	1976656	T
SNP	1978	4674	1	1976763	C
SNP	1979	4675	1	1976795	T
SNP	1980	4676	1	1976803	G
SNP	1981	4677	1	1976827	T
SNP	1982	4678	1	1976872	G
SNP	1983	4679	1	1976923	G
SNP	1984	4680	1	1976931	C
SNP	1985	4681	1	1976944	G
SNP	1986	4682	1	1977018	G
SNP	1987	4683	1	1977033	A
SNP	1988	4684	1	1977058	G
SNP	1989	4685	1	1977075	G
SNP	1990	4686	1	1977100	A
SNP	1991	4687	1	1977142	G
SNP	1992	4688	1	1977180	A
SNP	1993	4689	1	1977246	G
SNP	1994	4690	1	1977256	T
SNP	1995	4691	1	1977268	T
SNP	1996	4692	1	1977289	T
SNP	1997	4693	1	1977304	A
SNP	1998	4694	1	1977349	A
SNP	1999	4695	1	1977370	T
SNP	2000	4696	1	1977431	C
SNP	2001	4697	1	1977499	A
SNP	2002	4698	1	1977559	T
SNP	2003	4699	1	1977562	G
SNP	2004	4700	1	1977622	G
SNP	2005	4701	1	1977715	A
SNP	2006	4702	1	1977742	A
SNP	2007	4703	1	1977744	G
SNP	2008	4704	1	1977760	C
SNP	2009	4705	1	1977775	C
SNP	2010	4706	1	1977778	G
SNP	2011	4707	1	1977794	G
SNP	2012	4708	1	1977811	C
SNP	2013	4709	1	1978036	A
SNP	2014	4710	1	1978039	G
SNP	2015	4711	1	1978120	T
SNP	2016	4712	1	1978189	G
SNP	2017	4713	1	1978201	T
SNP	2018	4714	1	1978212	G
SNP	2019	4715	1	1978234	G
SNP	2020	4716	1	1978246	C
SUB	2021	4717,4718	1	1978260	2	GC
SNP	2022	4719	1	1978264	C
SNP	2023	4720	1	1978272	C
SNP	2024	4721	1	1978312	C
SNP	2025	4722	1	1978344	A
SNP	2026	4723	1	1978348	C
SNP	2027	4724	1	1978375	C
SNP	2028	4725	1	1978453	A
SNP	2029	4726	1	1978474	A
SNP	2030	4727	1	1978513	C
SNP	2031	4728	1	1978518	C
SNP	2032	4729	1	1978585	C
SNP	2033	4730	1	1978630	C
SNP	2034	4731	1	1978645	G
SNP	2035	4732	1	1978670	A
SNP	2036	4733	1	1978690	T
SNP	2037	4734	1	1978696	A
SNP	2038	4735	1	1978701	T
SNP	2039	4736	1	1978713	T
SNP	2040	4737	1	1978723	T
SNP	2041	4738	1	1978739	C
SNP	2042	4739	1	1978810	A
SNP	2043	4740	1	1978861	A
SNP	2044	4741	1	1978917	A
SNP	2045	4742	1	1978922	T
SNP	2046	4743	1	1979070	C
SNP	2047	4744	1	1979172	C
SNP	2048	4745	1	1979205	A
SNP	2049	4746	1	1979214	T
SNP	2050	4747	1	1979222	G
SNP	2051	4748	1	1979393	T
SNP	2052	4749	1	1979397	C
SNP	2053	4750	1	1979400	C
SNP	2054	4751	1	1979406	C
SNP	2055	4752	1	1979419	T
SNP	2056	4753	1	1979487	T
SNP	2057	4754	1	1979499	C
SNP	2058	4755	1	1979508	G
SNP	2059	4756	1	1979568	G
SNP	2060	4757	1	1979577	C
SNP	2061	4758	1	1979622	A
SNP	2062	4759	1	1979628	A
SNP	2063	4760	1	1979633	T
SNP	2064	4761	1	1979637	G
SNP	2065	4762	1	1979640	A
SNP	2066	4763	1	1979646	C
SNP	2067	4764	1	1979649	G
SNP	2068	4765	1	1979670	T
SNP	2069	4766	1	1979673	T
SNP	2070	4767	1	1979691	G
SNP	2071	4768	1	1979715	C
SNP	2072	4769	1	1979718	C
SNP	2073	4770	1	1979721	T
SNP	2074	4771	1	1979727	A
SNP	2075	4772	1	1979742	A
SNP	2076	4773	1	1979751	T
SNP	2077	4774	1	1979763	A
SNP	2078	4775	1	1979784	G
SNP	2079	4776	1	1979787	A
SNP	2080	4777	1	1979790	G
SNP	2081	4778	1	1979796	G
SNP	2082	4779	1	1979805	A
SNP	2083	4780	1	1979808	T
SNP	2084	4781	1	1979811	G
SNP	2085	4782	1	1979814	G
SNP	2086	4783	1	1979817	G
SUB	2087	4784,4785	1	1979822	2	TT
SNP	2088	4786	1	1979826	T
SNP	2089	4787	1	1979832	G
SNP	2090	4788	1	1979835	C
SNP	2091	4789	1	1979838	A
SNP	2092	4790	1	1979844	A
SNP	2093	4791	1	1979853	T
SNP	2094	4792	1	1979859	T
SNP	2095	4793	1	1979862	G
SNP	2096	4794	1	1979865	G
SNP	2097	4795	1	1979871	A
SNP	2098	4796	1	1979891	C
SNP	2099	4797	1	1979898	A
SNP	2100	4798	1	1979929	C
SNP	2101	4799	1	1979943	A
SNP	2102	4800	1	1979945	G
SNP	2103	4801	1	1979949	C
SNP	2104	4802	1	1979954	A
SNP	2105	4803	1	1979956	T
SNP	2106	4804	1	1979958	A
SNP	2107	4805	1	1980457	C
SNP	2108	4806	1	1982403	A
DEL	2109	5282	1	1982864	3
SNP	2110	4808	1	1983081	A
SNP	2111	4809	1	1984693	G
SNP	2112	4810	1	1984978	A
SNP	2113	4811	1	1985088	T
SNP	2114	4812	1	1985161	A
SNP	2115	4813	1	1985375	C
SNP	2116	4814	1	1985544	A
INS	2117	4815	1	1985736	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	2118	4816	1	1985960	G
SNP	2119	4817	1	1986009	C
SNP	2120	4818	1	1986021	T
SNP	2121	4819	1	1986045	C
SNP	2122	4820	1	1986078	T
SNP	2123	4821	1	1986112	C
SNP	2124	4822	1	1986168	C
SNP	2125	4823	1	1986201	A
SNP	2126	4824	1	1986312	T
SNP	2127	4825	1	1986314	C
SNP	2128	4826	1	1986325	T
SNP	2129	4828	1	1986499	G
SNP	2130	4829	1	1986508	A
SNP	2131	4830	1	1986532	G
SNP	2132	4831	1	1986559	G
SNP	2133	4832	1	1986574	C
SNP	2134	4833	1	1986577	G
SNP	2135	4834	1	1986580	T
SNP	2136	4835	1	1986583	C
SNP	2137	4836	1	1986585	A
SNP	2138	4837	1	1986631	G
SNP	2139	4838	1	1986640	C
SNP	2140	4839	1	1986671	T
SNP	2141	4840	1	1986688	A
SNP	2142	4841	1	1986694	C
SNP	2143	4842	1	1986697	T
SNP	2144	4843	1	1986722	T
SNP	2145	4844	1	1986727	C
SNP	2146	4845	1	1986775	C
SNP	2147	4846	1	1986825	G
SNP	2148	4847	1	1986829	C
SNP	2149	4848	1	1986831	A
SNP	2150	4849	1	1986886	T
SNP	2151	4850	1	1986910	A
SNP	2152	4851	1	1986973	A
SNP	2153	4852	1	1986976	A
SNP	2154	4853	1	1986997	T
SNP	2155	4854	1	1987003	T
SNP	2156	4855	1	1987009	T
SNP	2157	4856	1	1987018	A
SNP	2158	4857	1	1987144	G
SNP	2159	4858	1	1987152	G
SNP	2160	4859	1	1987159	G
SNP	2161	4860	1	1987201	G
SNP	2162	4861	1	1987228	A
SNP	2163	4862	1	1987232	A
SNP	2164	4863	1	1987235	A
SNP	2165	4864	1	1987241	G
SNP	2166	4865	1	1987252	A
SNP	2167	4866	1	1987385	G
SNP	2168	4867	1	1987491	C
SNP	2169	4868	1	1987501	G
SUB	2170	4869,4870,4871	1	1987553	3	GCG
SNP	2171	4872	1	1987561	C
SUB	2172	4873,4874	1	1987571	2	GC
SNP	2173	4875	1	1987678	C
SNP	2174	4876	1	1987898	A
SNP	2175	4877	1	1987918	A
SNP	2176	4878	1	1987937	G
SNP	2177	4879	1	1987946	T
SNP	2178	4880	1	1987984	C
SNP	2179	4881	1	1987990	T
SNP	2180	4882	1	1987999	A
SNP	2181	4883	1	1988036	T
SNP	2182	4884	1	1988048	A
SNP	2183	4885	1	1988050	A
SUB	2184	4886,4887,4888	1	1988056	3	GCG
SUB	2185	4889,4890	1	1988062	2	AT
SNP	2186	4891	1	1988074	T
SNP	2187	4892	1	1988082	C
SNP	2188	4893	1	1988095	G
SNP	2189	4894	1	1988098	G
SNP	2190	4895	1	1988111	G
SNP	2191	4896	1	1988117	T
SUB	2192	4897,4898	1	1988160	2	TG
SNP	2193	4899	1	1988164	A
SNP	2194	4900	1	1988191	A
SNP	2195	4901	1	1988222	G
SNP	2196	4902	1	1988304	T
SNP	2197	4903	1	1988370	G
SNP	2198	4904	1	1988408	C
SNP	2199	4905	1	1988447	C
SNP	2200	4906	1	1988474	G
SUB	2201	4907,4908	1	1988507	2	TA
SNP	2202	4909	1	1988556	T
SNP	2203	4910	1	1988559	C
SNP	2204	4911	1	1988655	T
SNP	2205	4912	1	1988676	G
SNP	2206	4913	1	1988694	G
SNP	2207	4914	1	1988750	A
SNP	2208	4915	1	1988754	T
SNP	2209	4916	1	1988791	A
SNP	2210	4917	1	1988807	A
SNP	2211	4918	1	1988847	A
SNP	2212	4919	1	1988856	A
SNP	2213	4920	1	1988970	T
SNP	2214	4921	1	1988976	T
SNP	2215	4922	1	1988978	A
SNP	2216	4923	1	1989036	A
SNP	2217	4924	1	1989138	G
SNP	2218	4925	1	1989144	T
SNP	2219	4926	1	1989146	C
SNP	2220	4927	1	1989164	C
SNP	2221	4928	1	1989202	G
SNP	2222	4929	1	1989222	C
SNP	2223	4930	1	1989257	G
SNP	2224	4931	1	1989279	G
SNP	2225	4932	1	1989289	G
SNP	2226	4933	1	1989291	C
SNP	2227	4934	1	1989341	C
SNP	2228	4935	1	1989354	T
SNP	2229	4936	1	1989383	A
SNP	2230	4937	1	1989414	T
SNP	2231	4938	1	1989429	G
SNP	2232	4939	1	1989432	G
SNP	2233	4940	1	1989438	T
SNP	2234	4941	1	1989510	A
SNP	2235	4942	1	1989534	A
SNP	2236	4943	1	1989537	A
SNP	2237	4944	1	1989576	A
SNP	2238	4945	1	1989615	T
SNP	2239	4946	1	1989619	C
SNP	2240	4947	1	1989630	A
SNP	2241	4948	1	1989644	G
SNP	2242	4949	1	1989681	G
SNP	2243	4950	1	1989684	G
SNP	2244	4951	1	1989687	A
SNP	2245	4952	1	1989711	G
SNP	2246	4953	1	1989723	T
SNP	2247	4954	1	1989751	T
SUB	2248	4955,4956	1	1989786	2	CT
SNP	2249	4957	1	1989792	C
SNP	2250	4958	1	1989833	T
SNP	2251	4959	1	1989836	C
SNP	2252	4960	1	1989839	A
SNP	2253	4961	1	1989887	T
SNP	2254	4962	1	1989898	C
SNP	2255	4963	1	1989918	A
SNP	2256	4964	1	1989921	A
SNP	2257	4965	1	1989930	T
SNP	2258	4966	1	1989954	C
SNP	2259	4967	1	1989960	C
SNP	2260	4968	1	1989969	T
SNP	2261	4969	1	1989972	G
SNP	2262	4970	1	1989999	G
SNP	2263	4971	1	1990002	T
SNP	2264	4972	1	1990023	A
SNP	2265	4973	1	1990035	G
SNP	2266	4974	1	1990041	C
SNP	2267	4975	1	1990059	C
SNP	2268	4976	1	1990062	C
SNP	2269	4977	1	1990089	T
SNP	2270	4978	1	1990092	G
SNP	2271	4979	1	1990140	G
SNP	2272	4980	1	1990221	T
SNP	2273	4981	1	1990278	G
SNP	2274	4982	1	1990350	T
SNP	2275	4983	1	1990353	A
SNP	2276	4984	1	1990365	C
SNP	2277	4985	1	1990368	T
DEL	2278	4986	1	1990422	1
SNP	2279	4987	1	1990425	G
INS	2280	4988	1	1990429	T
SNP	2281	4989	1	1990436	A
SNP	2282	4990	1	1990443	T
SNP	2283	4991	1	1990500	G
SNP	2284	4992	1	1990541	A
SNP	2285	4993	1	1990545	A
SNP	2286	4994	1	1990551	A
SNP	2287	4995	1	1990569	G
SNP	2288	4996	1	1990578	T
SNP	2289	4997	1	1990600	G
SNP	2290	4998	1	1990617	A
SNP	2291	4999	1	1990623	A
DEL	2292	5151,5283	1	1991907	836
INS	2293	5000	1	1993597	T
SNP	2294	5001	1	1994062	G
SNP	2295	5002	1	1995102	C
SNP	2296	5003	1	1995750	A
SNP	2297	5004	1	1996401	A
SNP	2298	5005	1	1999460	A
SNP	2299	5006	1	1999649	T
SNP	2300	5007	1	2002092	C
SNP	2301	5008	1	2003266	T
SNP	2302	5009	1	2005051	C
SNP	2303	5010	1	2008726	A
SNP	2304	5011	1	2009063	A
SNP	2305	5012	1	2011669	C
SNP	2306	5013	1	2011719	C
SNP	2307	5014	1	2013193	G
SNP	2308	5015	1	2017439	G
SNP	2309	5016	1	2017586	G
SNP	2310	5017	1	2017652	G
SNP	2311	5018	1	2018525	G
SNP	2312	5019	1	2019116	G
SNP	2313	5020	1	2021404	C
SNP	2314	5021	1	2022889	T
SNP	2315	5022	1	2023551	G
SNP	2316	5023	1	2024385	G
SNP	2317	5024	1	2025262	G
SNP	2318	5025	1	2026259	G
SNP	2319	5026	1	2026981	G
SNP	2320	5027	1	2027397	A
SNP	2321	5028	1	2029006	C
SNP	2322	5030	1	2031609	G
SNP	2323	5031	1	2031899	T
INS	2324	5285	1	2033460	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	2325	5032	1	2033808	T
DEL	2326	5152,5286	1	2035115	1001
SNP	2327	5034	1	2038225	G
SNP	2328	5035	1	2038365	A
SNP	2329	5036	1	2038596	G
SNP	2330	5038	1	2038989	T
SNP	2331	5039	1	2040742	A
SNP	2332	5040	1	2041026	G
SNP	2333	5041	1	2046520	A
SNP	2334	5042	1	2046952	G
SNP	2335	5043	1	2047408	A
SNP	2336	5044	1	2047657	C
SNP	2337	5045	1	2048407	G
INS	2338	5046	1	2048950	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	2339	5047	1	2049717	G
SNP	2340	5049	1	2054639	G
SNP	2341	5050	1	2055756	A
SNP	2342	5051	1	2056174	T
SNP	2343	5052	1	2057114	A
SNP	2344	5053	1	2058578	A
SNP	2345	5054	1	2059057	C
SNP	2346	5055	1	2062549	A
SNP	2347	5056	1	2062721	A
SNP	2348	5057	1	2063156	C
SNP	2349	5058	1	2063992	C
SNP	2350	5059	1	2064093	C
SNP	2351	5060	1	2064218	T
SNP	2352	5061	1	2065319	A
SNP	2353	5062	1	2066318	G
SNP	2354	5063	1	2066401	G
SNP	2355	5064	1	2067537	C
SNP	2356	5065	1	2067726	G
SNP	2357	5066	1	2068105	A
SNP	2358	5067	1	2069933	T
SNP	2359	5068	1	2072255	G
DEL	2360	5154,5287	1	2072588	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ATCA
SNP	2361	5071	1	2076599	A
SNP	2362	5072	1	2079321	C
SNP	2363	5073	1	2079462	C
SNP	2364	5074	1	2080118	C
SNP	2365	5075	1	2080682	C
SNP	2366	5076	1	2082316	G
SNP	2367	5077	1	2082883	G
SNP	2368	5078	1	2084325	G
SNP	2369	5079	1	2085679	C
SNP	2370	5080	1	2086604	C
SNP	2371	5081	1	2086743	A
SNP	2372	5082	1	2086920	C
SNP	2373	5083	1	2087115	G
SNP	2374	5084	1	2087385	C
SNP	2375	5085	1	2088730	T
SNP	2376	5086	1	2089505	T
SNP	2377	5087	1	2089660	T
SNP	2378	5088	1	2092599	G
SNP	2379	5089	1	2093602	A
SNP	2380	5091	1	2096722	A
INS	2381	5289	1	2098806	GGTCGGTT
SNP	2382	5095	1	2100437	A
SNP	2383	5096	1	2100749	C
SNP	2384	5097	1	2106131	C
SNP	2385	5098	1	2109440	T
SNP	2386	5099	1	2109843	C
RA	2387	.	1	1088	0	G	A	consensus_score=294.4	frequency=1	major_base=A	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	2388	.	1	1525	0	G	A	consensus_score=214.8	frequency=1	major_base=A	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	2389	.	1	4364	0	C	T	consensus_score=137.1	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	2390	.	1	5160	0	C	T	consensus_score=256.5	frequency=1	major_base=T	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	2391	.	1	5211	0	A	T	consensus_score=149.1	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	2392	.	1	5213	0	A	G	consensus_score=155.1	frequency=1	major_base=G	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	2393	.	1	5217	0	C	T	consensus_score=146.7	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	2394	.	1	5264	0	A	G	consensus_score=93.4	frequency=1	major_base=G	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	2395	.	1	5267	0	T	C	consensus_score=98.1	frequency=1	major_base=C	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	2396	.	1	7360	0	A	G	consensus_score=242.1	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	2397	.	1	7401	0	C	T	bias_e_value=1745670	bias_p_value=0.826965	consensus_score=216.9	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=39/34	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=39/34	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	2398	.	1	31999	0	G	A	consensus_score=240.0	frequency=1	major_base=A	major_cov=31/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/53
RA	2399	.	1	33869	0	C	T	consensus_score=230.9	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	2400	.	1	34390	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=244.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	2401	.	1	38787	0	G	C	consensus_score=323.8	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	2402	.	1	38992	0	A	C	consensus_score=242.3	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	2403	.	1	39765	0	T	G	consensus_score=12.9	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	2404	.	1	42219	0	G	A	consensus_score=218.0	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	2405	.	1	43172	0	G	A	consensus_score=158.1	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	2406	.	1	44604	0	T	G	bias_e_value=1.53608e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.1	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	2407	.	1	46861	0	A	G	consensus_score=274.4	frequency=1	major_base=G	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	2408	.	1	49304	0	G	T	consensus_score=281.4	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	2409	.	1	54478	0	C	T	consensus_score=308.2	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	2410	.	1	54600	0	T	G	consensus_score=209.5	frequency=1	major_base=G	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	2411	.	1	54764	0	A	G	consensus_score=329.0	frequency=1	major_base=G	major_cov=73/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/34
RA	2412	.	1	56131	0	C	T	consensus_score=265.3	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	2413	.	1	56663	0	C	T	consensus_score=239.6	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2414	.	1	58745	0	C	A	consensus_score=301.3	frequency=1	major_base=A	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	2415	.	1	61028	0	C	A	consensus_score=133.5	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2416	.	1	63179	0	A	C	consensus_score=281.9	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	2417	.	1	64970	0	A	C	consensus_score=272.8	frequency=1	major_base=C	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	2418	.	1	65367	0	T	G	bias_e_value=4.11675e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.0	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	2419	.	1	65591	0	A	C	bias_e_value=28.0139	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.9	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	2420	.	1	65620	0	T	C	bias_e_value=0.0055886	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.4	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	2421	.	1	65626	0	A	C	bias_e_value=0.0658175	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.8	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	2422	.	1	65630	0	G	T	bias_e_value=1.79811	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.2	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	2423	.	1	65640	0	C	A	bias_e_value=0.0155219	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.4	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	2424	.	1	65662	0	G	C	bias_e_value=0.0998234	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.8	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	2425	.	1	71923	0	T	C	bias_e_value=1760100	bias_p_value=0.833803	consensus_score=300.1	fisher_strand_p_value=0.49	frequency=1	ks_quality_p_value=0.98377	major_base=C	major_cov=51/48	major_frequency=9.900e-01	minor_base=T	minor_cov=0/1	new_cov=51/48	polymorphism_frequency=9.900e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=51/49
RA	2426	.	1	72414	0	C	T	consensus_score=208.1	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	2427	.	1	72581	0	C	A	consensus_score=352.3	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	2428	.	1	73832	0	A	G	consensus_score=250.3	frequency=1	major_base=G	major_cov=56/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/26
RA	2429	.	1	75253	0	T	C	consensus_score=233.5	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	2430	.	1	75788	0	C	A	bias_e_value=8.48021e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	2431	.	1	75799	0	T	C	bias_e_value=4.19495e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.0	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	2432	.	1	75829	0	G	A	bias_e_value=1.21303e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.3	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	2433	.	1	75840	0	G	T	bias_e_value=3.41805e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.0	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	2434	.	1	75850	0	G	A	bias_e_value=1.06104e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.5	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	2435	.	1	75853	0	A	C	bias_e_value=3.78482e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.2	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	2436	.	1	78736	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=344.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999411	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	2437	.	1	80182	0	C	T	consensus_score=301.0	frequency=1	major_base=T	major_cov=68/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/36
RA	2438	.	1	81129	0	C	G	consensus_score=325.8	frequency=1	major_base=G	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	2439	.	1	81633	0	C	T	consensus_score=393.4	frequency=1	major_base=T	major_cov=67/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/70
RA	2440	.	1	81759	0	T	C	consensus_score=387.2	frequency=1	major_base=C	major_cov=65/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/61
RA	2441	.	1	83301	0	A	G	bias_e_value=1290640	bias_p_value=0.611407	consensus_score=439.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.260868	major_base=G	major_cov=77/75	major_frequency=9.935e-01	minor_base=A	minor_cov=1/0	new_cov=77/75	polymorphism_frequency=9.935e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=1/0	total_cov=78/75
RA	2442	.	1	85631	0	A	G	consensus_score=342.9	frequency=1	major_base=G	major_cov=59/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/60
RA	2443	.	1	87994	0	C	T	consensus_score=363.3	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	2444	.	1	88049	0	G	T	consensus_score=341.9	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	2445	.	1	88618	0	C	T	consensus_score=319.2	frequency=1	major_base=T	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	2446	.	1	92111	0	T	G	consensus_score=185.1	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	2447	.	1	94733	0	T	G	bias_e_value=2110930	bias_p_value=1	consensus_score=329.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=66/43	major_frequency=9.909e-01	minor_base=A	minor_cov=1/0	new_cov=66/43	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	2448	.	1	96165	0	C	T	consensus_score=42.5	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	2449	.	1	98295	0	T	C	consensus_score=310.8	frequency=1	major_base=C	major_cov=64/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/41
RA	2450	.	1	100575	0	C	T	consensus_score=289.0	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	2451	.	1	101298	0	T	C	consensus_score=275.1	frequency=1	major_base=C	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	2452	.	1	101847	1	.	T	consensus_score=358.5	frequency=1	major_base=T	major_cov=73/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/46
RA	2453	.	1	101847	2	.	T	bias_e_value=1591470	bias_p_value=0.753916	consensus_score=354.8	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.999858	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	2454	.	1	102666	0	G	T	consensus_score=271.5	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	2455	.	1	103954	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	2456	.	1	104673	0	A	G	bias_e_value=1398580	bias_p_value=0.66254	consensus_score=189.8	fisher_strand_p_value=0.304348	frequency=1	ks_quality_p_value=0.9894	major_base=G	major_cov=48/20	major_frequency=9.855e-01	minor_base=.	minor_cov=0/1	new_cov=48/20	polymorphism_frequency=9.855e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=48/21
RA	2457	.	1	104821	0	G	A	consensus_score=162.9	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	2458	.	1	107006	1	.	G	consensus_score=325.6	frequency=1	major_base=G	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	2459	.	1	107894	0	G	A	bias_e_value=1608920	bias_p_value=0.762183	consensus_score=383.1	fisher_strand_p_value=0.395349	frequency=1	ks_quality_p_value=0.999879	major_base=A	major_cov=50/78	major_frequency=9.922e-01	minor_base=.	minor_cov=1/0	new_cov=50/78	polymorphism_frequency=9.922e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=51/78
RA	2460	.	1	110046	0	T	C	consensus_score=334.1	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	2461	.	1	111330	0	A	G	consensus_score=296.1	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	2462	.	1	113375	0	C	T	consensus_score=257.1	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2463	.	1	114986	0	T	C	consensus_score=226.7	frequency=1	major_base=C	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	2464	.	1	115294	0	T	G	consensus_score=255.5	frequency=1	major_base=G	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	2465	.	1	115510	0	C	T	consensus_score=242.8	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	2466	.	1	118351	0	G	A	consensus_score=287.9	frequency=1	major_base=A	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	2467	.	1	120347	0	A	G	consensus_score=264.5	frequency=1	major_base=G	major_cov=32/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/57
RA	2468	.	1	122394	0	T	C	consensus_score=339.9	frequency=1	major_base=C	major_cov=49/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/62
RA	2469	.	1	123163	0	A	G	consensus_score=331.4	frequency=1	major_base=G	major_cov=67/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/44
RA	2470	.	1	123610	0	C	.	bias_e_value=639097	bias_p_value=0.302756	consensus_score=449.9	fisher_strand_p_value=0.0883619	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=61/47	major_frequency=9.730e-01	minor_base=A	minor_cov=0/3	new_cov=61/47	polymorphism_frequency=9.730e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	2471	.	1	125165	0	T	C	bias_e_value=2102900	bias_p_value=0.996195	consensus_score=309.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914046	major_base=C	major_cov=52/56	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=52/56	polymorphism_frequency=9.908e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=52/57
RA	2472	.	1	126095	0	T	C	consensus_score=421.9	frequency=1	major_base=C	major_cov=82/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/60
RA	2473	.	1	127464	0	A	G	consensus_score=433.9	frequency=1	major_base=G	major_cov=82/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/61
RA	2474	.	1	129880	0	G	A	consensus_score=135.9	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	2475	.	1	130301	0	C	T	consensus_score=323.0	frequency=1	major_base=T	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	2476	.	1	135265	0	A	G	consensus_score=347.2	frequency=1	major_base=G	major_cov=63/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/56
RA	2477	.	1	136281	0	C	T	consensus_score=308.0	frequency=1	major_base=T	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	2478	.	1	136795	0	T	C	consensus_score=218.2	frequency=1	major_base=C	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	2479	.	1	139138	0	C	T	consensus_score=357.3	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	2480	.	1	144211	0	C	T	consensus_score=377.8	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	2481	.	1	144340	0	C	T	consensus_score=327.0	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	2482	.	1	144633	0	A	G	consensus_score=178.4	frequency=1	major_base=G	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	2483	.	1	145370	0	G	A	consensus_score=334.7	frequency=1	major_base=A	major_cov=68/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/46
RA	2484	.	1	145908	0	G	A	consensus_score=318.6	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	2485	.	1	146545	0	A	G	consensus_score=311.1	frequency=1	major_base=G	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	2486	.	1	147639	0	T	C	consensus_score=366.2	frequency=1	major_base=C	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
RA	2487	.	1	149812	0	C	A	consensus_score=158.6	frequency=1	major_base=A	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	2488	.	1	149939	0	A	C	consensus_score=126.0	frequency=1	major_base=C	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	2489	.	1	150027	0	A	C	consensus_score=62.1	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	2490	.	1	150050	0	G	A	consensus_score=64.7	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	2491	.	1	150067	0	G	A	consensus_score=62.4	frequency=1	major_base=A	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	2492	.	1	150070	0	C	G	consensus_score=66.6	frequency=1	major_base=G	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	2493	.	1	150090	0	T	A	consensus_score=69.2	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	2494	.	1	150115	0	C	T	consensus_score=83.7	frequency=1	major_base=T	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	2495	.	1	150339	0	A	G	consensus_score=145.1	frequency=1	major_base=G	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	2496	.	1	150529	0	A	G	consensus_score=58.3	frequency=1	major_base=G	major_cov=12/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	2497	.	1	152482	0	C	T	consensus_score=286.1	frequency=1	major_base=T	major_cov=61/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/39
RA	2498	.	1	155653	0	C	A	bias_e_value=1731210	bias_p_value=0.820114	consensus_score=420.6	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/63	major_frequency=9.928e-01	minor_base=T	minor_cov=0/1	new_cov=74/63	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/64
RA	2499	.	1	156442	0	C	T	consensus_score=379.4	frequency=1	major_base=T	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	2500	.	1	156768	0	C	T	consensus_score=195.1	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	2501	.	1	157770	0	G	A	bias_e_value=0.000987482	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.0	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	2502	.	1	158633	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	2503	.	1	158807	0	G	A	consensus_score=98.8	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	2504	.	1	159517	0	C	T	consensus_score=333.2	frequency=1	major_base=T	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	2505	.	1	159778	0	A	G	consensus_score=414.0	frequency=1	major_base=G	major_cov=66/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/75
RA	2506	.	1	160731	0	G	A	consensus_score=238.0	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	2507	.	1	160973	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=454.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/71	major_frequency=9.939e-01	minor_base=C	minor_cov=1/0	new_cov=93/71	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/71
RA	2508	.	1	161103	0	G	T	bias_e_value=8617.82	bias_p_value=0.00408247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.3	fisher_strand_p_value=0.000533797	frequency=7.670e-01	ks_quality_p_value=0.883166	major_base=T	major_cov=68/67	major_frequency=7.670e-01	minor_base=G	minor_cov=8/33	new_cov=68/67	polymorphism_frequency=7.670e-01	polymorphism_score=109.7	prediction=polymorphism	ref_cov=8/33	total_cov=76/100
RA	2509	.	1	161121	0	C	G	bias_e_value=19170.3	bias_p_value=0.00908142	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.8	fisher_strand_p_value=0.002764	frequency=2.660e-01	ks_quality_p_value=0.423998	major_base=C	major_cov=70/68	major_frequency=7.340e-01	minor_base=G	minor_cov=13/37	new_cov=13/37	polymorphism_frequency=2.660e-01	polymorphism_score=148.3	prediction=polymorphism	ref_cov=70/68	total_cov=83/105
RA	2510	.	1	161129	0	A	.	bias_e_value=109168	bias_p_value=0.0517153	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.4	fisher_strand_p_value=0.00906811	frequency=2.789e-01	ks_quality_p_value=1	major_base=A	major_cov=68/69	major_frequency=7.211e-01	minor_base=.	minor_cov=15/38	new_cov=15/38	polymorphism_frequency=2.789e-01	polymorphism_score=174.9	prediction=polymorphism	ref_cov=68/69	total_cov=83/107
RA	2511	.	1	161168	0	T	G	consensus_score=507.8	frequency=1	major_base=G	major_cov=74/110	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/110	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/110
RA	2512	.	1	163564	0	A	G	consensus_score=260.5	frequency=1	major_base=G	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2513	.	1	165083	0	T	C	consensus_score=275.9	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	2514	.	1	165719	0	G	A	consensus_score=252.6	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	2515	.	1	165917	0	A	G	consensus_score=299.1	frequency=1	major_base=G	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	2516	.	1	168532	0	A	G	consensus_score=307.6	frequency=1	major_base=G	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	2517	.	1	169290	0	A	G	consensus_score=324.3	frequency=1	major_base=G	major_cov=53/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/59
RA	2518	.	1	170715	0	G	T	consensus_score=299.2	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	2519	.	1	172818	0	G	A	bias_e_value=3373.07	bias_p_value=0.0015979	consensus_score=190.2	fisher_strand_p_value=0.000164521	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/50	major_frequency=8.987e-01	minor_base=C	minor_cov=8/0	new_cov=21/50	polymorphism_frequency=8.987e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=29/50
RA	2520	.	1	174981	0	G	A	bias_e_value=2.05947e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.6	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	2521	.	1	175055	0	G	T	bias_e_value=3.59649e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	2522	.	1	175093	0	G	A	bias_e_value=0.872969	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.0	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	2523	.	1	175529	0	C	T	consensus_score=258.5	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2524	.	1	175792	0	G	A	consensus_score=333.1	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	2525	.	1	176469	0	C	A	consensus_score=328.4	frequency=1	major_base=A	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	2526	.	1	177317	0	T	C	consensus_score=372.9	frequency=1	major_base=C	major_cov=58/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/62
RA	2527	.	1	177832	0	G	T	consensus_score=286.2	frequency=1	major_base=T	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	2528	.	1	178107	0	C	T	consensus_score=296.2	frequency=1	major_base=T	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	2529	.	1	178266	0	A	G	consensus_score=301.5	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	2530	.	1	178909	0	C	A	bias_e_value=2110640	bias_p_value=0.999859	consensus_score=291.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98324	major_base=A	major_cov=45/54	major_frequency=9.802e-01	minor_base=C	minor_cov=1/1	new_cov=45/54	polymorphism_frequency=9.802e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=46/55
RA	2531	.	1	180594	0	T	A	bias_e_value=0.481299	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	2532	.	1	180614	0	G	A	bias_e_value=0.4833	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.6	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	2533	.	1	183314	0	A	G	consensus_score=271.8	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	2534	.	1	183884	0	G	A	consensus_score=390.5	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	2535	.	1	185005	0	G	T	consensus_score=430.6	frequency=1	major_base=T	major_cov=74/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/69
RA	2536	.	1	186583	0	T	C	consensus_score=428.2	frequency=1	major_base=C	major_cov=75/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/70
RA	2537	.	1	187626	0	C	T	consensus_score=332.7	frequency=1	major_base=T	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	2538	.	1	187958	0	C	T	bias_e_value=1775460	bias_p_value=0.841077	consensus_score=317.0	fisher_strand_p_value=0.495726	frequency=1	ks_quality_p_value=0.992805	major_base=T	major_cov=57/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=57/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/59
RA	2539	.	1	188590	0	G	A	consensus_score=283.3	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	2540	.	1	191916	0	C	G	consensus_score=449.2	frequency=1	major_base=G	major_cov=77/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/70
RA	2541	.	1	192060	0	G	A	consensus_score=306.9	frequency=1	major_base=A	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	2542	.	1	192425	0	G	A	consensus_score=314.5	frequency=1	major_base=A	major_cov=32/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/72
RA	2543	.	1	193663	0	A	G	consensus_score=397.8	frequency=1	major_base=G	major_cov=64/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/77
RA	2544	.	1	197484	0	C	T	consensus_score=303.6	frequency=1	major_base=T	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	2545	.	1	198152	0	C	T	consensus_score=445.4	frequency=1	major_base=T	major_cov=74/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/78
RA	2546	.	1	200321	0	C	T	consensus_score=303.6	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	2547	.	1	204997	0	T	C	consensus_score=304.6	frequency=1	major_base=C	major_cov=60/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/44
RA	2548	.	1	207692	0	G	A	consensus_score=352.8	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	2549	.	1	209426	0	G	A	consensus_score=295.1	frequency=1	major_base=A	major_cov=58/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/44
RA	2550	.	1	209846	0	A	G	consensus_score=259.2	frequency=1	major_base=G	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	2551	.	1	210254	0	C	T	consensus_score=243.7	frequency=1	major_base=T	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	2552	.	1	210336	0	A	G	consensus_score=306.7	frequency=1	major_base=G	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	2553	.	1	210643	0	T	C	consensus_score=272.4	frequency=1	major_base=C	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	2554	.	1	210666	0	A	G	consensus_score=307.0	frequency=1	major_base=G	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	2555	.	1	212635	0	T	C	consensus_score=335.0	frequency=1	major_base=C	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	2556	.	1	212783	0	C	G	consensus_score=275.6	frequency=1	major_base=G	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	2557	.	1	213713	0	T	C	consensus_score=124.6	frequency=1	major_base=C	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	2558	.	1	214706	0	G	T	consensus_score=411.9	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	2559	.	1	217314	0	A	C	consensus_score=106.8	frequency=1	major_base=C	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	2560	.	1	218116	0	A	G	consensus_score=388.8	frequency=1	major_base=G	major_cov=69/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/64
RA	2561	.	1	226247	0	T	G	consensus_score=327.4	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	2562	.	1	228026	0	G	A	consensus_score=483.4	frequency=1	major_base=A	major_cov=76/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/88
RA	2563	.	1	229915	0	T	C	consensus_score=329.0	frequency=1	major_base=C	major_cov=49/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/65
RA	2564	.	1	230343	0	T	C	consensus_score=277.9	frequency=1	major_base=C	major_cov=33/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/62
RA	2565	.	1	230488	0	C	A	consensus_score=226.7	frequency=1	major_base=A	major_cov=12/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/65
RA	2566	.	1	231265	0	G	A	consensus_score=323.5	frequency=1	major_base=A	major_cov=65/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/47
RA	2567	.	1	232105	0	G	A	consensus_score=245.9	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	2568	.	1	232495	0	T	C	consensus_score=383.9	frequency=1	major_base=C	major_cov=66/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	2569	.	1	233097	0	A	C	consensus_score=421.0	frequency=1	major_base=C	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	2570	.	1	233762	0	T	C	bias_e_value=2778.23	bias_p_value=0.00131611	consensus_score=173.4	fisher_strand_p_value=0.000132559	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=20/50	major_frequency=8.974e-01	minor_base=T	minor_cov=8/0	new_cov=20/50	polymorphism_frequency=8.974e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=8/0	total_cov=30/50
RA	2571	.	1	234564	0	G	T	bias_e_value=1.00206e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.8	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	2572	.	1	235785	0	G	A	consensus_score=342.1	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	2573	.	1	236412	0	T	G	consensus_score=290.2	frequency=1	major_base=G	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	2574	.	1	238668	0	A	G	consensus_score=225.7	frequency=1	major_base=G	major_cov=53/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/26
RA	2575	.	1	242442	0	A	G	consensus_score=261.8	frequency=1	major_base=G	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	2576	.	1	245554	0	C	T	consensus_score=245.4	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2577	.	1	247653	0	G	A	bias_e_value=1064150	bias_p_value=0.504111	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.8	fisher_strand_p_value=0.24715	frequency=5.103e-01	ks_quality_p_value=0.765291	major_base=A	major_cov=39/60	major_frequency=5.103e-01	minor_base=G	minor_cov=46/49	new_cov=39/60	polymorphism_frequency=5.103e-01	polymorphism_score=216.4	prediction=polymorphism	ref_cov=46/49	total_cov=85/109
RA	2578	.	1	247674	0	G	A	bias_e_value=245456	bias_p_value=0.116279	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.1	fisher_strand_p_value=0.0275798	frequency=4.516e-01	ks_quality_p_value=0.897201	major_base=G	major_cov=57/45	major_frequency=5.484e-01	minor_base=A	minor_cov=33/51	new_cov=33/51	polymorphism_frequency=4.516e-01	polymorphism_score=189.3	prediction=polymorphism	ref_cov=57/45	total_cov=90/96
RA	2579	.	1	247767	0	C	T	bias_e_value=1151720	bias_p_value=0.545596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.5	fisher_strand_p_value=0.223054	frequency=2.366e-01	ks_quality_p_value=0.964231	major_base=C	major_cov=55/45	major_frequency=7.634e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=2.366e-01	polymorphism_score=54.5	prediction=polymorphism	ref_cov=55/45	total_cov=68/63
RA	2580	.	1	247828	0	C	A	consensus_score=16.5	frequency=1	major_base=A	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	2581	.	1	247833	0	G	A	consensus_score=13.4	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	2582	.	1	247834	0	T	C	consensus_score=13.6	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	2583	.	1	248018	0	T	C	consensus_score=680.3	frequency=1	major_base=C	major_cov=124/119	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=124/119	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=124/119
RA	2584	.	1	248048	0	A	G	consensus_score=831.7	frequency=1	major_base=G	major_cov=154/134	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=154/134	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=154/134
RA	2585	.	1	248054	0	T	C	consensus_score=896.4	frequency=1	major_base=C	major_cov=159/149	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=159/149	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=159/149
RA	2586	.	1	248080	0	C	T	consensus_score=1050.7	frequency=1	major_base=T	major_cov=193/174	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=193/174	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=193/174
RA	2587	.	1	248309	0	G	A	bias_e_value=1726680	bias_p_value=0.817968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.3	fisher_strand_p_value=0.504429	frequency=7.460e-01	ks_quality_p_value=0.913877	major_base=A	major_cov=71/70	major_frequency=7.460e-01	minor_base=G	minor_cov=21/27	new_cov=71/70	polymorphism_frequency=7.460e-01	polymorphism_score=98.3	prediction=polymorphism	ref_cov=21/27	total_cov=92/98
RA	2588	.	1	249501	0	G	A	consensus_score=348.4	frequency=1	major_base=A	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	2589	.	1	250427	0	G	A	consensus_score=320.2	frequency=1	major_base=A	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	2590	.	1	254419	0	C	T	consensus_score=297.7	frequency=1	major_base=T	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	2591	.	1	255026	0	G	A	consensus_score=332.8	frequency=1	major_base=A	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	2592	.	1	256108	0	C	T	consensus_score=377.7	frequency=1	major_base=T	major_cov=58/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/72
RA	2593	.	1	256775	0	C	T	consensus_score=438.2	frequency=1	major_base=T	major_cov=85/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/63
RA	2594	.	1	257324	0	T	C	consensus_score=332.2	frequency=1	major_base=C	major_cov=46/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/69
RA	2595	.	1	261668	0	T	C	bias_e_value=1307410	bias_p_value=0.619351	consensus_score=373.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.26683	major_base=C	major_cov=75/50	major_frequency=9.921e-01	minor_base=.	minor_cov=1/0	new_cov=75/50	polymorphism_frequency=9.921e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=76/50
RA	2596	.	1	262931	0	T	C	consensus_score=347.3	frequency=1	major_base=C	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	2597	.	1	263930	0	G	T	consensus_score=250.1	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	2598	.	1	264133	0	C	A	consensus_score=324.9	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	2599	.	1	264468	0	A	C	bias_e_value=1.93282e-05	bias_p_value=9.15624e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.6	fisher_strand_p_value=3.07138e-13	frequency=2.841e-01	ks_quality_p_value=1	major_base=A	major_cov=12/51	major_frequency=7.159e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=12/51	total_cov=37/52
RA	2600	.	1	264486	0	T	A	bias_e_value=0.000159193	bias_p_value=7.54133e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=2.72971e-12	frequency=2.892e-01	ks_quality_p_value=1	major_base=T	major_cov=12/47	major_frequency=7.108e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.892e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=12/47	total_cov=36/53
RA	2601	.	1	264494	0	G	A	bias_e_value=6.56256	bias_p_value=3.10884e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.1	fisher_strand_p_value=1.88602e-07	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.955e-01	minor_base=A	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.045e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=19/51	total_cov=37/52
RA	2602	.	1	264531	0	A	C	bias_e_value=1.98724	bias_p_value=9.41405e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=5.30297e-08	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=43/20	major_frequency=7.326e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=43/20	total_cov=44/42
RA	2603	.	1	264605	0	A	C	bias_e_value=4.00296e-07	bias_p_value=1.8963e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.8	fisher_strand_p_value=5.60793e-15	frequency=3.407e-01	ks_quality_p_value=1	major_base=A	major_cov=51/9	major_frequency=6.593e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.407e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=51/9	total_cov=53/39
RA	2604	.	1	264649	0	A	G	consensus_score=249.8	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	2605	.	1	265398	0	T	A	bias_e_value=0.0909451	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.7	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	2606	.	1	268373	0	C	T	consensus_score=324.4	frequency=1	major_base=T	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	2607	.	1	270534	0	A	G	consensus_score=287.1	frequency=1	major_base=G	major_cov=57/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/41
RA	2608	.	1	273373	0	A	C	consensus_score=444.4	frequency=1	major_base=C	major_cov=73/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/74
RA	2609	.	1	274976	0	G	T	consensus_score=245.4	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2610	.	1	278898	0	A	G	bias_e_value=0.177817	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.8	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	2611	.	1	279591	0	A	G	consensus_score=367.1	frequency=1	major_base=G	major_cov=64/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/61
RA	2612	.	1	287382	0	A	C	consensus_score=251.5	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	2613	.	1	287760	0	C	T	consensus_score=190.7	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	2614	.	1	287922	0	C	T	consensus_score=301.5	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	2615	.	1	290915	0	A	C	bias_e_value=2110930	bias_p_value=1	consensus_score=210.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/44	major_frequency=9.865e-01	minor_base=A	minor_cov=0/1	new_cov=29/44	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/45
RA	2616	.	1	291871	0	G	A	bias_e_value=1671220	bias_p_value=0.791699	consensus_score=226.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/32	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=44/32	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/33
RA	2617	.	1	292435	0	C	T	consensus_score=181.4	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	2618	.	1	292550	0	T	C	consensus_score=201.1	frequency=1	major_base=C	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	2619	.	1	294150	0	C	T	consensus_score=315.6	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	2620	.	1	294343	0	A	G	consensus_score=153.0	frequency=1	major_base=G	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	2621	.	1	296043	0	T	G	consensus_score=181.2	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	2622	.	1	297692	0	A	G	consensus_score=173.5	frequency=1	major_base=G	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	2623	.	1	298109	0	C	T	consensus_score=240.3	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	2624	.	1	299048	0	C	T	consensus_score=178.4	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	2625	.	1	301286	0	C	A	bias_e_value=1.97487e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.0	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	2626	.	1	301310	0	T	A	bias_e_value=0.000578435	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.8	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	2627	.	1	301593	0	A	G	bias_e_value=1.74971	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.2	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	2628	.	1	301608	0	C	G	bias_e_value=0.0807536	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.0	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	2629	.	1	301836	0	G	A	consensus_score=309.4	frequency=1	major_base=A	major_cov=60/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/46
RA	2630	.	1	303503	0	G	A	consensus_score=334.5	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	2631	.	1	304148	0	A	G	consensus_score=348.7	frequency=1	major_base=G	major_cov=61/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	2632	.	1	304581	0	G	A	consensus_score=326.8	frequency=1	major_base=A	major_cov=52/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	2633	.	1	309156	0	A	C	consensus_score=204.4	frequency=1	major_base=C	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	2634	.	1	309537	0	C	A	consensus_score=224.3	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	2635	.	1	311596	0	A	G	bias_e_value=1769390	bias_p_value=0.838201	consensus_score=248.3	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.998956	major_base=G	major_cov=42/45	major_frequency=9.886e-01	minor_base=.	minor_cov=1/0	new_cov=42/45	polymorphism_frequency=9.886e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	2636	.	1	313119	0	A	G	consensus_score=244.5	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	2637	.	1	314751	0	C	T	consensus_score=232.0	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	2638	.	1	315300	0	C	T	consensus_score=291.9	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	2639	.	1	316301	0	T	C	consensus_score=352.1	frequency=1	major_base=C	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	2640	.	1	316840	0	T	C	consensus_score=227.7	frequency=1	major_base=C	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	2641	.	1	316841	0	A	G	consensus_score=219.5	frequency=1	major_base=G	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	2642	.	1	317354	0	C	T	consensus_score=213.4	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	2643	.	1	317779	0	T	A	bias_e_value=6.6989e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.4	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	2644	.	1	317825	0	A	T	bias_e_value=1.86658e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.0	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	2645	.	1	318654	0	A	G	bias_e_value=1705920	bias_p_value=0.808136	consensus_score=186.7	fisher_strand_p_value=0.449275	frequency=1	ks_quality_p_value=0.998296	major_base=G	major_cov=30/38	major_frequency=9.855e-01	minor_base=T	minor_cov=1/0	new_cov=30/38	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	2646	.	1	320182	0	G	A	consensus_score=269.0	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	2647	.	1	322563	0	G	A	consensus_score=286.3	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	2648	.	1	323238	0	A	G	consensus_score=293.1	frequency=1	major_base=G	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	2649	.	1	324178	0	C	G	consensus_score=274.7	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	2650	.	1	325752	0	C	T	consensus_score=286.6	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	2651	.	1	326769	0	T	C	consensus_score=283.7	frequency=1	major_base=C	major_cov=38/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/61
RA	2652	.	1	327491	0	C	A	consensus_score=417.5	frequency=1	major_base=A	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	2653	.	1	328041	0	C	A	consensus_score=320.7	frequency=1	major_base=A	major_cov=62/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/45
RA	2654	.	1	329249	0	T	C	consensus_score=333.4	frequency=1	major_base=C	major_cov=73/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/39
RA	2655	.	1	329814	0	T	C	consensus_score=339.1	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	2656	.	1	330113	0	G	A	consensus_score=319.7	frequency=1	major_base=A	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	2657	.	1	332376	0	A	G	consensus_score=396.8	frequency=1	major_base=G	major_cov=69/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/60
RA	2658	.	1	332570	0	T	C	consensus_score=309.1	frequency=1	major_base=C	major_cov=69/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/38
RA	2659	.	1	333638	0	T	C	consensus_score=338.4	frequency=1	major_base=C	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	2660	.	1	335388	0	T	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	2661	.	1	335479	0	C	T	consensus_score=273.2	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	2662	.	1	336706	0	A	.	consensus_score=416.2	frequency=1	major_base=.	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	2663	.	1	337490	0	T	G	consensus_score=347.8	frequency=1	major_base=G	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	2664	.	1	337554	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=40/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/59
RA	2665	.	1	337708	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=340.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=58/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=58/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	2666	.	1	340416	0	G	A	consensus_score=341.0	frequency=1	major_base=A	major_cov=49/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/65
RA	2667	.	1	343057	0	A	G	consensus_score=319.4	frequency=1	major_base=G	major_cov=46/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/61
RA	2668	.	1	345427	0	A	G	consensus_score=277.5	frequency=1	major_base=G	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	2669	.	1	347363	0	C	T	consensus_score=222.6	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	2670	.	1	348581	0	A	G	consensus_score=373.2	frequency=1	major_base=G	major_cov=72/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/55
RA	2671	.	1	348754	0	T	C	consensus_score=313.4	frequency=1	major_base=C	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	2672	.	1	350260	0	T	C	consensus_score=397.1	frequency=1	major_base=C	major_cov=67/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/65
RA	2673	.	1	352113	0	A	C	consensus_score=240.5	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	2674	.	1	354696	0	A	G	consensus_score=305.3	frequency=1	major_base=G	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	2675	.	1	354830	0	A	G	consensus_score=243.9	frequency=1	major_base=G	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	2676	.	1	356458	0	C	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=30/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/61
RA	2677	.	1	360192	0	G	A	consensus_score=303.3	frequency=1	major_base=A	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	2678	.	1	365717	0	G	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	2679	.	1	365915	0	T	C	consensus_score=331.5	frequency=1	major_base=C	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	2680	.	1	367308	0	A	G	consensus_score=287.9	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	2681	.	1	367461	0	G	A	consensus_score=233.4	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	2682	.	1	368370	0	G	T	consensus_score=361.7	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	2683	.	1	369401	0	C	T	consensus_score=320.8	frequency=1	major_base=T	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	2684	.	1	370175	0	T	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	2685	.	1	370176	0	T	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	2686	.	1	370208	0	A	G	consensus_score=110.8	frequency=1	major_base=G	major_cov=11/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/33
RA	2687	.	1	370216	0	G	A	consensus_score=118.8	frequency=1	major_base=A	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2688	.	1	370222	0	T	C	consensus_score=126.4	frequency=1	major_base=C	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2689	.	1	370225	0	T	.	consensus_score=169.1	frequency=1	major_base=.	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2690	.	1	371403	0	A	G	consensus_score=260.0	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	2691	.	1	375778	0	G	A	consensus_score=281.7	frequency=1	major_base=A	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	2692	.	1	376515	0	C	T	consensus_score=261.7	frequency=1	major_base=T	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	2693	.	1	376753	0	G	A	consensus_score=267.1	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	2694	.	1	377905	0	T	C	bias_e_value=1.01854e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.1	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	2695	.	1	380672	0	A	G	consensus_score=268.7	frequency=1	major_base=G	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	2696	.	1	380894	0	A	G	consensus_score=352.9	frequency=1	major_base=G	major_cov=65/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/56
RA	2697	.	1	388701	0	G	A	consensus_score=272.2	frequency=1	major_base=A	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	2698	.	1	388914	0	A	C	consensus_score=279.2	frequency=1	major_base=C	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	2699	.	1	392003	0	T	G	consensus_score=276.8	frequency=1	major_base=G	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	2700	.	1	395059	0	A	C	bias_e_value=5.69181e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.8	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	2701	.	1	395122	0	A	C	bias_e_value=6.11696e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.1	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	2702	.	1	395407	0	C	T	consensus_score=259.5	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	2703	.	1	396285	0	A	C	bias_e_value=1817240	bias_p_value=0.860872	consensus_score=253.9	fisher_strand_p_value=0.521272	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/57	major_frequency=9.792e-01	minor_base=A	minor_cov=0/2	new_cov=37/57	polymorphism_frequency=9.792e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/2	total_cov=37/59
RA	2704	.	1	396830	0	A	G	consensus_score=326.3	frequency=1	major_base=G	major_cov=65/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/42
RA	2705	.	1	397082	0	C	T	consensus_score=306.6	frequency=1	major_base=T	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	2706	.	1	398422	0	C	T	consensus_score=313.7	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	2707	.	1	399439	0	C	T	consensus_score=342.8	frequency=1	major_base=T	major_cov=49/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/64
RA	2708	.	1	400468	0	A	G	consensus_score=267.3	frequency=1	major_base=G	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	2709	.	1	400956	0	C	A	bias_e_value=0.0739622	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	2710	.	1	400981	0	T	A	bias_e_value=0.000732335	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.9	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	2711	.	1	400992	0	G	A	bias_e_value=5.85439e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.7	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	2712	.	1	401014	0	T	A	bias_e_value=8.22012e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.6	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	2713	.	1	401447	0	G	A	consensus_score=221.6	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	2714	.	1	402659	0	T	C	consensus_score=248.8	frequency=1	major_base=C	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	2715	.	1	402863	0	A	G	consensus_score=286.3	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	2716	.	1	402944	0	C	A	consensus_score=280.4	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2717	.	1	404348	0	T	G	consensus_score=197.4	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	2718	.	1	404408	0	T	.	consensus_score=175.3	frequency=1	major_base=.	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	2719	.	1	404994	0	G	C	consensus_score=252.9	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	2720	.	1	406075	0	G	T	consensus_score=331.9	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	2721	.	1	407962	0	G	T	consensus_score=330.2	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	2722	.	1	408399	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=354.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/57	major_frequency=9.913e-01	minor_base=T	minor_cov=0/1	new_cov=57/57	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	2723	.	1	409089	0	G	A	bias_e_value=0.0118884	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	2724	.	1	409140	0	T	C	bias_e_value=1.34288e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.8	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	2725	.	1	410331	0	A	G	consensus_score=309.5	frequency=1	major_base=G	major_cov=63/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/44
RA	2726	.	1	416798	0	C	T	consensus_score=368.1	frequency=1	major_base=T	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	2727	.	1	417283	0	G	A	consensus_score=284.5	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	2728	.	1	418554	0	T	C	consensus_score=363.1	frequency=1	major_base=C	major_cov=72/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/54
RA	2729	.	1	418875	0	C	A	consensus_score=350.5	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	2730	.	1	421506	0	G	A	consensus_score=288.0	frequency=1	major_base=A	major_cov=30/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/66
RA	2731	.	1	422574	0	A	G	consensus_score=426.6	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	2732	.	1	423524	0	T	G	consensus_score=308.6	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	2733	.	1	425881	0	G	T	consensus_score=370.9	frequency=1	major_base=T	major_cov=62/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/66
RA	2734	.	1	425981	0	G	A	consensus_score=340.5	frequency=1	major_base=A	major_cov=55/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/58
RA	2735	.	1	426456	0	A	G	consensus_score=367.4	frequency=1	major_base=G	major_cov=56/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/70
RA	2736	.	1	427047	0	A	G	consensus_score=449.0	frequency=1	major_base=G	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	2737	.	1	428276	0	A	G	consensus_score=344.1	frequency=1	major_base=G	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	2738	.	1	428526	0	G	T	consensus_score=330.8	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	2739	.	1	428882	0	A	G	bias_e_value=348086	bias_p_value=0.164896	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.3	fisher_strand_p_value=0.0388069	frequency=6.786e-01	ks_quality_p_value=1	major_base=G	major_cov=11/27	major_frequency=6.786e-01	minor_base=A	minor_cov=11/7	new_cov=11/27	polymorphism_frequency=6.786e-01	polymorphism_score=33.0	prediction=polymorphism	ref_cov=11/7	total_cov=22/34
RA	2740	.	1	428939	0	T	G	consensus_score=58.3	frequency=1	major_base=G	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	2741	.	1	434529	0	C	T	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=97.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9985	major_base=T	major_cov=18/18	major_frequency=9.730e-01	minor_base=A	minor_cov=1/0	new_cov=18/18	polymorphism_frequency=9.730e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	2742	.	1	435872	1	.	T	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=306.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998603	major_base=T	major_cov=55/51	major_frequency=9.815e-01	minor_base=.	minor_cov=1/1	new_cov=55/51	polymorphism_frequency=9.815e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=56/53
RA	2743	.	1	435881	0	C	A	consensus_score=340.6	frequency=1	major_base=A	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	2744	.	1	436272	0	C	T	consensus_score=410.8	frequency=1	major_base=T	major_cov=68/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/68
RA	2745	.	1	440144	0	T	G	consensus_score=240.8	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	2746	.	1	441006	0	A	G	consensus_score=186.5	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	2747	.	1	446250	0	A	.	bias_e_value=2110920	bias_p_value=0.999992	consensus_score=564.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996028	major_base=.	major_cov=67/67	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=67/67	polymorphism_frequency=9.926e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=68/67
RA	2748	.	1	446539	0	A	T	bias_e_value=2107880	bias_p_value=0.998553	consensus_score=203.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94668	major_base=T	major_cov=29/43	major_frequency=9.863e-01	minor_base=A	minor_cov=0/1	new_cov=29/43	polymorphism_frequency=9.863e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=29/44
RA	2749	.	1	446540	0	C	A	bias_e_value=2108760	bias_p_value=0.998972	consensus_score=204.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955001	major_base=A	major_cov=29/43	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=29/43	polymorphism_frequency=9.863e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=29/44
RA	2750	.	1	446542	0	T	C	consensus_score=210.1	frequency=1	major_base=C	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2751	.	1	446544	0	G	A	consensus_score=210.9	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2752	.	1	446545	0	T	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2753	.	1	446559	0	T	A	consensus_score=192.5	frequency=1	major_base=A	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2754	.	1	446560	0	A	T	consensus_score=190.5	frequency=1	major_base=T	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2755	.	1	446565	0	A	T	consensus_score=188.4	frequency=1	major_base=T	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2756	.	1	446583	0	A	G	consensus_score=180.2	frequency=1	major_base=G	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	2757	.	1	446591	0	C	T	consensus_score=142.4	frequency=1	major_base=T	major_cov=17/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/33
RA	2758	.	1	446593	0	C	T	consensus_score=141.7	frequency=1	major_base=T	major_cov=17/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/33
RA	2759	.	1	446600	0	T	.	consensus_score=159.7	frequency=1	major_base=.	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	2760	.	1	446608	0	T	A	consensus_score=109.2	frequency=1	major_base=A	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	2761	.	1	446625	0	A	C	consensus_score=37.3	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2762	.	1	446626	0	A	C	consensus_score=37.5	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2763	.	1	446627	0	G	A	consensus_score=35.7	deleted=1	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2764	.	1	446630	0	A	C	consensus_score=37.8	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2765	.	1	446634	0	C	T	consensus_score=35.5	deleted=1	frequency=1	major_base=T	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2766	.	1	446635	0	C	A	consensus_score=36.0	deleted=1	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2767	.	1	446639	0	G	T	consensus_score=36.3	deleted=1	frequency=1	major_base=T	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2768	.	1	446660	0	A	T	consensus_score=24.2	deleted=1	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	2769	.	1	447713	0	C	T	consensus_score=321.1	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	2770	.	1	450605	0	T	C	consensus_score=382.7	frequency=1	major_base=C	major_cov=57/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/70
RA	2771	.	1	450678	0	G	A	consensus_score=328.6	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	2772	.	1	450749	1	.	A	bias_e_value=2109660	bias_p_value=0.999397	consensus_score=348.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965478	major_base=A	major_cov=53/66	major_frequency=9.597e-01	minor_base=.	minor_cov=2/3	new_cov=53/66	polymorphism_frequency=9.597e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=2/3	total_cov=55/69
RA	2773	.	1	450936	0	G	A	consensus_score=442.1	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	2774	.	1	452594	0	T	C	consensus_score=413.3	frequency=1	major_base=C	major_cov=73/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/66
RA	2775	.	1	452819	0	G	A	consensus_score=307.5	frequency=1	major_base=A	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	2776	.	1	452933	0	G	C	bias_e_value=345970	bias_p_value=0.163894	consensus_score=330.4	fisher_strand_p_value=0.0384988	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/66	major_frequency=9.667e-01	minor_base=G	minor_cov=4/0	new_cov=50/66	polymorphism_frequency=9.667e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=4/0	total_cov=54/66
RA	2777	.	1	453939	0	A	G	consensus_score=464.2	frequency=1	major_base=G	major_cov=86/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/79
RA	2778	.	1	454038	0	G	A	bias_e_value=146306	bias_p_value=0.0693087	consensus_score=478.2	fisher_strand_p_value=0.012966	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/84	major_frequency=9.672e-01	minor_base=C	minor_cov=0/6	new_cov=93/84	polymorphism_frequency=9.672e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=93/91
RA	2779	.	1	454100	0	T	C	consensus_score=522.6	frequency=1	major_base=C	major_cov=90/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=90/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=90/87
RA	2780	.	1	456446	0	G	A	consensus_score=439.7	frequency=1	major_base=A	major_cov=65/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/82
RA	2781	.	1	457042	0	A	G	consensus_score=431.8	frequency=1	major_base=G	major_cov=67/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/74
RA	2782	.	1	457976	0	T	C	bias_e_value=1695770	bias_p_value=0.803328	consensus_score=315.6	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999865	major_base=C	major_cov=53/68	major_frequency=9.918e-01	minor_base=T	minor_cov=1/0	new_cov=53/68	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/68
RA	2783	.	1	460421	0	G	A	consensus_score=329.2	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	2784	.	1	462227	0	A	G	consensus_score=394.0	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	2785	.	1	463137	0	T	C	consensus_score=293.3	frequency=1	major_base=C	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	2786	.	1	463392	0	G	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	2787	.	1	463547	0	T	C	consensus_score=322.7	frequency=1	major_base=C	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	2788	.	1	463967	0	G	A	consensus_score=214.3	frequency=1	major_base=A	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	2789	.	1	467744	0	C	T	consensus_score=299.3	frequency=1	major_base=T	major_cov=70/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/32
RA	2790	.	1	467794	0	T	C	consensus_score=347.9	frequency=1	major_base=C	major_cov=73/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/45
RA	2791	.	1	467858	0	G	A	bias_e_value=273475	bias_p_value=0.129552	consensus_score=291.7	fisher_strand_p_value=0.0284025	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/52	major_frequency=9.455e-01	minor_base=C	minor_cov=0/6	new_cov=52/52	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	2792	.	1	468576	0	A	G	consensus_score=315.7	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	2793	.	1	468935	0	T	C	consensus_score=229.2	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	2794	.	1	468999	0	G	T	consensus_score=201.9	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	2795	.	1	469242	0	A	T	bias_e_value=0.0432988	bias_p_value=2.05117e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.7	fisher_strand_p_value=9.41619e-10	frequency=2.317e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.683e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.317e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/48	total_cov=34/48
RA	2796	.	1	470133	0	G	T	consensus_score=209.7	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	2797	.	1	470321	0	A	G	consensus_score=166.9	frequency=1	major_base=G	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	2798	.	1	470335	0	A	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	2799	.	1	471507	0	A	G	consensus_score=106.0	frequency=1	major_base=G	major_cov=32/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/11
RA	2800	.	1	472441	0	A	G	consensus_score=208.0	frequency=1	major_base=G	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	2801	.	1	474168	0	A	G	consensus_score=293.9	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	2802	.	1	475181	0	G	A	consensus_score=90.7	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	2803	.	1	475778	0	T	C	consensus_score=254.4	frequency=1	major_base=C	major_cov=55/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	2804	.	1	475862	0	C	T	consensus_score=244.4	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	2805	.	1	476387	0	T	C	consensus_score=245.8	frequency=1	major_base=C	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	2806	.	1	476658	1	.	T	bias_e_value=1878590	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.9	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2807	.	1	476658	2	.	A	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2808	.	1	476658	3	.	A	bias_e_value=1878590	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.9	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2809	.	1	476658	4	.	T	bias_e_value=1878590	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.8	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2810	.	1	476658	5	.	T	bias_e_value=1878590	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2811	.	1	476658	6	.	A	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.8	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2812	.	1	476658	7	.	G	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2813	.	1	476658	8	.	C	bias_e_value=1878590	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=C	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2814	.	1	476658	9	.	A	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2815	.	1	476658	10	.	G	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2816	.	1	476658	11	.	A	bias_e_value=1922480	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2817	.	1	477698	0	A	C	consensus_score=47.6	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	2818	.	1	477765	0	G	C	consensus_score=90.6	frequency=1	major_base=C	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	2819	.	1	478208	0	C	T	consensus_score=257.5	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	2820	.	1	478612	0	T	A	bias_e_value=2110930	bias_p_value=1	consensus_score=266.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=42/47	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=42/47	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/48
RA	2821	.	1	481934	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	2822	.	1	482738	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	2823	.	1	483168	0	A	G	consensus_score=309.0	frequency=1	major_base=G	major_cov=43/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/64
RA	2824	.	1	483350	0	A	G	consensus_score=275.8	frequency=1	major_base=G	major_cov=34/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	2825	.	1	485986	0	G	A	consensus_score=272.3	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	2826	.	1	490143	0	A	G	consensus_score=340.0	frequency=1	major_base=G	major_cov=66/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/51
RA	2827	.	1	490542	0	T	C	bias_e_value=6.75559e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.2	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.204e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.796e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=58/9	total_cov=58/36
RA	2828	.	1	492149	0	C	T	consensus_score=295.8	frequency=1	major_base=T	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	2829	.	1	493995	0	T	C	consensus_score=398.2	frequency=1	major_base=C	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	2830	.	1	499490	0	G	T	bias_e_value=7.03634e-09	bias_p_value=3.33329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=8.77835e-17	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=6/58	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=6/58	total_cov=31/58
RA	2831	.	1	500236	0	C	T	consensus_score=421.4	frequency=1	major_base=T	major_cov=62/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/82
RA	2832	.	1	501425	0	A	G	bias_e_value=0.00972233	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	2833	.	1	501844	0	C	T	consensus_score=360.0	frequency=1	major_base=T	major_cov=54/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/71
RA	2834	.	1	501972	0	C	A	bias_e_value=2110930	bias_p_value=1	consensus_score=314.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999853	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	2835	.	1	502022	0	A	C	bias_e_value=5.94475e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.0	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	2836	.	1	502604	0	G	T	bias_e_value=6.21197e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.0	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	2837	.	1	502618	0	C	A	bias_e_value=0.694999	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	2838	.	1	504519	0	A	G	bias_e_value=1735620	bias_p_value=0.822205	consensus_score=436.4	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.999642	major_base=G	major_cov=80/69	major_frequency=9.933e-01	minor_base=A	minor_cov=0/1	new_cov=80/69	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=80/70
RA	2839	.	1	505272	0	A	G	bias_e_value=0.046188	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	2840	.	1	505328	0	C	T	bias_e_value=0.127958	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	2841	.	1	506426	0	A	G	bias_e_value=2110870	bias_p_value=0.999972	consensus_score=227.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	2842	.	1	510517	0	A	G	consensus_score=307.4	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	2843	.	1	510845	0	A	G	consensus_score=410.4	frequency=1	major_base=G	major_cov=76/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/65
RA	2844	.	1	511589	0	T	C	consensus_score=409.1	frequency=1	major_base=C	major_cov=85/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/52
RA	2845	.	1	513013	0	G	A	consensus_score=229.9	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	2846	.	1	514903	0	A	T	consensus_score=193.6	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	2847	.	1	514909	0	C	T	consensus_score=192.3	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	2848	.	1	514955	0	T	G	consensus_score=128.6	frequency=1	major_base=G	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	2849	.	1	514959	0	T	C	consensus_score=132.8	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	2850	.	1	516223	0	T	C	consensus_score=350.1	frequency=1	major_base=C	major_cov=70/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/49
RA	2851	.	1	516472	0	C	T	bias_e_value=0.00537315	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.7	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	2852	.	1	516480	0	C	A	bias_e_value=0.00289858	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.7	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	2853	.	1	516970	0	T	C	consensus_score=316.4	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	2854	.	1	517247	0	G	A	consensus_score=257.2	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	2855	.	1	518276	0	C	T	consensus_score=315.0	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	2856	.	1	519158	0	G	A	consensus_score=313.6	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	2857	.	1	520187	0	G	A	bias_e_value=1682850	bias_p_value=0.797204	consensus_score=377.3	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	2858	.	1	521558	0	G	A	consensus_score=383.3	frequency=1	major_base=A	major_cov=58/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/71
RA	2859	.	1	524286	0	T	C	consensus_score=427.4	frequency=1	major_base=C	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	2860	.	1	526319	0	C	T	consensus_score=324.3	frequency=1	major_base=T	major_cov=45/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/64
RA	2861	.	1	526550	0	T	G	bias_e_value=1611640	bias_p_value=0.763474	consensus_score=346.9	fisher_strand_p_value=0.396694	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/73	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=47/73	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/73
RA	2862	.	1	526712	1	.	A	bias_e_value=866157	bias_p_value=0.410319	consensus_score=386.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.137501	major_base=A	major_cov=54/71	major_frequency=9.921e-01	minor_base=.	minor_cov=0/1	new_cov=54/71	polymorphism_frequency=9.921e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=54/72
RA	2863	.	1	530556	0	T	G	bias_e_value=3.30246e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.4	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	2864	.	1	532049	0	T	C	bias_e_value=1781450	bias_p_value=0.843913	consensus_score=328.2	fisher_strand_p_value=0.496183	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/65	major_frequency=9.847e-01	minor_base=A	minor_cov=2/0	new_cov=64/65	polymorphism_frequency=9.847e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	2865	.	1	532218	0	C	A	bias_e_value=1225080	bias_p_value=0.580349	consensus_score=310.8	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	2866	.	1	533403	0	G	A	consensus_score=311.2	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	2867	.	1	534445	0	G	A	consensus_score=367.7	frequency=1	major_base=A	major_cov=54/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/69
RA	2868	.	1	534508	0	T	G	consensus_score=364.1	frequency=1	major_base=G	major_cov=62/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/57
RA	2869	.	1	536125	0	C	T	consensus_score=401.2	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	2870	.	1	539327	0	A	T	bias_e_value=258.385	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.0	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	2871	.	1	539356	0	C	T	bias_e_value=56.7409	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.9	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	2872	.	1	544438	0	T	G	consensus_score=349.7	frequency=1	major_base=G	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	2873	.	1	545003	0	A	G	consensus_score=298.6	frequency=1	major_base=G	major_cov=40/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/61
RA	2874	.	1	550626	0	G	A	consensus_score=261.8	frequency=1	major_base=A	major_cov=64/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/22
RA	2875	.	1	551259	0	G	A	consensus_score=283.0	frequency=1	major_base=A	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	2876	.	1	552235	1	.	T	consensus_score=272.4	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	2877	.	1	553445	0	C	G	consensus_score=440.3	frequency=1	major_base=G	major_cov=81/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/69
RA	2878	.	1	554820	0	G	A	consensus_score=333.1	frequency=1	major_base=A	major_cov=58/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/59
RA	2879	.	1	554944	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=60/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/40
RA	2880	.	1	556340	0	T	C	consensus_score=349.4	frequency=1	major_base=C	major_cov=64/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/51
RA	2881	.	1	556403	0	C	A	consensus_score=316.1	frequency=1	major_base=A	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	2882	.	1	558723	0	A	C	bias_e_value=1.35063e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.6	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	2883	.	1	561048	0	T	C	consensus_score=424.5	frequency=1	major_base=C	major_cov=75/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/66
RA	2884	.	1	563358	0	G	A	consensus_score=312.6	frequency=1	major_base=A	major_cov=63/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/43
RA	2885	.	1	565297	0	G	A	consensus_score=201.1	frequency=1	major_base=A	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	2886	.	1	565578	0	G	A	consensus_score=360.9	frequency=1	major_base=A	major_cov=67/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	2887	.	1	567287	0	A	G	consensus_score=448.5	frequency=1	major_base=G	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	2888	.	1	567465	0	A	G	consensus_score=419.4	frequency=1	major_base=G	major_cov=91/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=91/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/54
RA	2889	.	1	568105	0	G	T	consensus_score=408.3	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	2890	.	1	568143	0	G	T	consensus_score=432.4	frequency=1	major_base=T	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	2891	.	1	569718	0	T	C	consensus_score=242.5	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	2892	.	1	570967	0	T	C	consensus_score=344.7	frequency=1	major_base=C	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	2893	.	1	571275	0	G	A	consensus_score=322.9	frequency=1	major_base=A	major_cov=62/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/50
RA	2894	.	1	571885	0	T	G	bias_e_value=7.70336e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=9/54	major_frequency=6.774e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.226e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=9/54	total_cov=39/54
RA	2895	.	1	571898	0	C	T	bias_e_value=0.00373038	bias_p_value=1.76717e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.2	fisher_strand_p_value=7.25849e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=17/52	major_frequency=7.582e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=17/52	total_cov=39/52
RA	2896	.	1	571934	0	G	T	bias_e_value=0.00019406	bias_p_value=9.19309e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.1	fisher_strand_p_value=3.35254e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=16/58	total_cov=39/58
RA	2897	.	1	578921	0	G	A	consensus_score=270.2	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	2898	.	1	582813	0	T	C	consensus_score=267.7	frequency=1	major_base=C	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	2899	.	1	583186	0	T	C	consensus_score=271.3	frequency=1	major_base=C	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	2900	.	1	583703	0	T	C	consensus_score=276.6	frequency=1	major_base=C	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2901	.	1	586064	0	C	T	consensus_score=276.3	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2902	.	1	588333	0	A	C	consensus_score=120.0	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	2903	.	1	589859	0	G	T	consensus_score=260.2	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	2904	.	1	591715	0	A	G	consensus_score=243.7	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	2905	.	1	591746	0	A	G	consensus_score=279.7	frequency=1	major_base=G	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	2906	.	1	591879	0	A	C	consensus_score=247.1	frequency=1	major_base=C	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	2907	.	1	591890	0	T	A	consensus_score=207.4	frequency=1	major_base=A	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2908	.	1	591892	0	C	G	consensus_score=214.5	frequency=1	major_base=G	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2909	.	1	591894	0	C	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2910	.	1	591899	0	G	C	consensus_score=207.0	frequency=1	major_base=C	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2911	.	1	592878	0	A	.	consensus_score=85.0	deleted=1	frequency=1	major_base=.	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	2912	.	1	592888	0	T	C	consensus_score=61.7	deleted=1	frequency=1	major_base=C	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	2913	.	1	593052	0	T	C	consensus_score=235.2	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	2914	.	1	593063	0	T	G	consensus_score=223.4	frequency=1	major_base=G	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	2915	.	1	593086	0	G	A	consensus_score=237.9	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2916	.	1	593090	0	G	A	consensus_score=243.3	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	2917	.	1	593133	0	C	T	consensus_score=237.8	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	2918	.	1	593150	0	G	A	consensus_score=220.7	frequency=1	major_base=A	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	2919	.	1	593170	0	G	T	bias_e_value=1150770	bias_p_value=0.545147	consensus_score=227.5	fisher_strand_p_value=0.214783	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/37	major_frequency=9.286e-01	minor_base=G	minor_cov=5/1	new_cov=41/37	polymorphism_frequency=9.286e-01	polymorphism_score=7.6	prediction=consensus	ref_cov=5/1	total_cov=46/38
RA	2920	.	1	593183	0	C	T	bias_e_value=831101	bias_p_value=0.393712	consensus_score=214.2	fisher_strand_p_value=0.202011	frequency=1	ks_quality_p_value=0.639856	major_base=T	major_cov=38/42	major_frequency=9.302e-01	minor_base=C	minor_cov=5/1	new_cov=38/42	polymorphism_frequency=9.302e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=5/1	total_cov=43/43
RA	2921	.	1	593197	0	A	G	consensus_score=264.4	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	2922	.	1	593330	0	T	C	bias_e_value=1016030	bias_p_value=0.481319	consensus_score=162.9	fisher_strand_p_value=0.189578	frequency=1	ks_quality_p_value=0.927041	major_base=C	major_cov=21/39	major_frequency=9.091e-01	minor_base=T	minor_cov=4/2	new_cov=21/39	polymorphism_frequency=9.091e-01	polymorphism_score=4.7	prediction=consensus	ref_cov=4/2	total_cov=25/41
RA	2923	.	1	593337	0	T	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=22/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/38
RA	2924	.	1	593413	0	C	G	consensus_score=90.1	frequency=1	major_base=G	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	2925	.	1	593429	0	T	C	bias_e_value=1279900	bias_p_value=0.60632	consensus_score=24.9	fisher_strand_p_value=0.52322	frequency=1	ks_quality_p_value=0.491386	major_base=C	major_cov=5/11	major_frequency=8.421e-01	minor_base=T	minor_cov=2/1	new_cov=5/11	polymorphism_frequency=8.421e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2926	.	1	593430	0	T	G	bias_e_value=1504070	bias_p_value=0.712514	consensus_score=34.0	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.643279	major_base=G	major_cov=6/11	major_frequency=8.500e-01	minor_base=A	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2927	.	1	593431	0	G	A	bias_e_value=1618070	bias_p_value=0.766516	consensus_score=44.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/12	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=7/12	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=8/12
RA	2928	.	1	593437	0	T	C	consensus_score=46.0	frequency=1	major_base=C	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2929	.	1	593441	0	G	A	bias_e_value=1186910	bias_p_value=0.562267	consensus_score=29.6	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.421175	major_base=A	major_cov=6/11	major_frequency=8.500e-01	minor_base=G	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2930	.	1	593442	0	G	T	bias_e_value=1007830	bias_p_value=0.477434	consensus_score=39.1	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.323223	major_base=T	major_cov=6/11	major_frequency=8.500e-01	minor_base=A	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2931	.	1	593444	0	G	C	bias_e_value=657209	bias_p_value=0.311335	consensus_score=40.8	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.171237	major_base=C	major_cov=6/11	major_frequency=8.500e-01	minor_base=G	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2932	.	1	593489	0	A	G	consensus_score=21.1	frequency=1	major_base=G	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	2933	.	1	593498	0	A	T	consensus_score=66.1	frequency=1	major_base=T	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2934	.	1	593499	0	T	G	consensus_score=69.8	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2935	.	1	593502	0	A	G	consensus_score=69.7	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2936	.	1	593510	0	T	G	consensus_score=106.9	frequency=1	major_base=G	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	2937	.	1	593516	0	A	G	consensus_score=134.0	frequency=1	major_base=G	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	2938	.	1	593547	0	T	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	2939	.	1	595500	0	C	G	bias_e_value=1731920	bias_p_value=0.820454	consensus_score=319.0	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.999839	major_base=G	major_cov=51/60	major_frequency=9.911e-01	minor_base=A	minor_cov=1/0	new_cov=51/60	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	2940	.	1	596232	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	2941	.	1	596532	0	A	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	2942	.	1	596537	0	T	C	consensus_score=236.6	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	2943	.	1	602874	0	G	T	consensus_score=272.8	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2944	.	1	602950	0	C	T	consensus_score=261.4	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	2945	.	1	603172	0	C	T	consensus_score=337.7	frequency=1	major_base=T	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	2946	.	1	603448	0	T	C	consensus_score=276.6	frequency=1	major_base=C	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2947	.	1	603933	0	C	A	bias_e_value=3.10484e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.4	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	2948	.	1	603957	0	G	A	bias_e_value=0.000106467	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.0	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	2949	.	1	603983	0	A	C	bias_e_value=0.0054996	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.3	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	2950	.	1	606710	0	G	A	consensus_score=337.3	frequency=1	major_base=A	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	2951	.	1	607375	0	T	C	consensus_score=344.3	frequency=1	major_base=C	major_cov=60/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	2952	.	1	609165	0	C	T	bias_e_value=4.58279e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.8	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	2953	.	1	609616	0	A	G	consensus_score=283.4	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	2954	.	1	610689	0	G	A	consensus_score=332.4	frequency=1	major_base=A	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	2955	.	1	611939	0	C	T	consensus_score=371.2	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	2956	.	1	612537	0	T	G	bias_e_value=538507	bias_p_value=0.255104	consensus_score=161.0	fisher_strand_p_value=0.656684	frequency=1	ks_quality_p_value=0.105999	major_base=G	major_cov=39/32	major_frequency=9.342e-01	minor_base=T	minor_cov=2/3	new_cov=39/32	polymorphism_frequency=9.342e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=2/3	total_cov=41/35
RA	2957	.	1	612541	0	T	C	bias_e_value=62073.4	bias_p_value=0.0294056	consensus_score=148.4	fisher_strand_p_value=0.653507	frequency=1	ks_quality_p_value=0.00705312	major_base=C	major_cov=39/31	major_frequency=9.333e-01	minor_base=T	minor_cov=2/3	new_cov=39/31	polymorphism_frequency=9.333e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/3	total_cov=41/34
RA	2958	.	1	612547	0	C	A	bias_e_value=2110850	bias_p_value=0.999962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.4	fisher_strand_p_value=1	frequency=2.432e-01	ks_quality_p_value=0.99135	major_base=C	major_cov=31/25	major_frequency=7.568e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.432e-01	polymorphism_score=42.1	prediction=polymorphism	ref_cov=31/25	total_cov=41/33
RA	2959	.	1	612549	0	G	A	bias_e_value=2106110	bias_p_value=0.997714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.933154	major_base=G	major_cov=30/25	major_frequency=7.534e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2960	.	1	612552	0	T	C	bias_e_value=1917720	bias_p_value=0.908471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.603893	major_base=T	major_cov=30/25	major_frequency=7.534e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2961	.	1	612555	0	T	C	bias_e_value=54691.3	bias_p_value=0.0259086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.3	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.00396792	major_base=T	major_cov=30/25	major_frequency=7.534e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2962	.	1	612557	0	G	A	bias_e_value=1819870	bias_p_value=0.862115	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.523185	major_base=G	major_cov=30/25	major_frequency=7.534e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2963	.	1	612561	0	T	G	bias_e_value=1974650	bias_p_value=0.935437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.6	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=0.662896	major_base=T	major_cov=28/25	major_frequency=7.465e-01	minor_base=G	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=47.3	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2964	.	1	612563	0	A	T	bias_e_value=2110930	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.5	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=1	major_base=A	major_cov=28/25	major_frequency=7.465e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2965	.	1	612564	0	A	C	bias_e_value=2110840	bias_p_value=0.999955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.9	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=0.990479	major_base=A	major_cov=28/25	major_frequency=7.465e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=44.3	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2966	.	1	612576	1	.	C	bias_e_value=2109470	bias_p_value=0.999304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.962927	major_base=.	major_cov=27/23	major_frequency=7.353e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.647e-01	polymorphism_score=82.0	prediction=polymorphism	ref_cov=27/23	total_cov=37/31
RA	2967	.	1	612576	2	.	T	bias_e_value=2070720	bias_p_value=0.980951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.811273	major_base=.	major_cov=27/23	major_frequency=7.353e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.647e-01	polymorphism_score=71.4	prediction=polymorphism	ref_cov=27/23	total_cov=37/31
RA	2968	.	1	612583	0	C	A	bias_e_value=178092	bias_p_value=0.0843663	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.7	fisher_strand_p_value=1	frequency=2.727e-01	ks_quality_p_value=0.0165351	major_base=C	major_cov=26/22	major_frequency=7.273e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.727e-01	polymorphism_score=43.2	prediction=polymorphism	ref_cov=26/22	total_cov=36/30
RA	2969	.	1	612643	0	G	A	consensus_score=56.5	frequency=1	major_base=A	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	2970	.	1	614090	0	T	C	consensus_score=268.0	frequency=1	major_base=C	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	2971	.	1	614550	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=263.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999766	major_base=T	major_cov=44/48	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	2972	.	1	614952	0	T	C	consensus_score=277.8	frequency=1	major_base=C	major_cov=31/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/59
RA	2973	.	1	615356	0	G	A	bias_e_value=0.0135186	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.2	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	2974	.	1	615402	0	G	A	consensus_score=287.7	frequency=1	major_base=A	major_cov=58/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/37
RA	2975	.	1	616007	0	T	G	consensus_score=305.7	frequency=1	major_base=G	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	2976	.	1	616198	0	T	C	consensus_score=255.4	frequency=1	major_base=C	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	2977	.	1	617328	0	G	A	bias_e_value=0.491643	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.5	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	2978	.	1	619451	0	C	T	consensus_score=278.6	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	2979	.	1	620386	0	G	A	consensus_score=269.2	frequency=1	major_base=A	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	2980	.	1	622433	0	T	C	consensus_score=317.3	frequency=1	major_base=C	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	2981	.	1	623500	0	C	T	consensus_score=265.1	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	2982	.	1	628350	0	T	C	consensus_score=293.9	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	2983	.	1	628356	0	A	G	consensus_score=281.4	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	2984	.	1	633014	0	A	C	consensus_score=288.4	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	2985	.	1	634273	0	T	C	bias_e_value=2110920	bias_p_value=0.999996	consensus_score=228.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997007	major_base=C	major_cov=42/35	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=42/35	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/35
RA	2986	.	1	636826	0	A	G	consensus_score=275.2	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	2987	.	1	638544	0	C	.	consensus_score=159.5	frequency=1	major_base=.	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	2988	.	1	639070	0	C	T	consensus_score=238.0	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	2989	.	1	641884	0	C	G	consensus_score=217.3	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2990	.	1	641885	0	G	T	consensus_score=219.5	frequency=1	major_base=T	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2991	.	1	641886	0	A	C	consensus_score=222.6	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2992	.	1	641997	0	G	A	consensus_score=235.7	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2993	.	1	642657	0	G	A	consensus_score=270.9	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	2994	.	1	643395	0	G	T	consensus_score=106.1	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	2995	.	1	643539	0	T	C	consensus_score=93.5	frequency=1	major_base=C	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	2996	.	1	644612	0	T	C	consensus_score=201.4	frequency=1	major_base=C	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	2997	.	1	647960	0	G	A	consensus_score=291.8	frequency=1	major_base=A	major_cov=63/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/37
RA	2998	.	1	651492	0	C	T	consensus_score=283.6	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	2999	.	1	651780	0	G	A	consensus_score=330.1	frequency=1	major_base=A	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	3000	.	1	652519	0	G	A	consensus_score=141.5	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	3001	.	1	654279	0	G	T	consensus_score=308.9	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	3002	.	1	654452	0	G	A	consensus_score=129.3	frequency=1	major_base=A	major_cov=13/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/32
RA	3003	.	1	655304	0	A	G	consensus_score=382.6	frequency=1	major_base=G	major_cov=69/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/55
RA	3004	.	1	655498	0	T	G	bias_e_value=4.08249e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.1	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=31.6	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	3005	.	1	655875	0	T	C	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=392.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998309	major_base=C	major_cov=65/72	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=65/72	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	3006	.	1	656960	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=236.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/41	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3007	.	1	662123	0	C	T	consensus_score=292.4	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	3008	.	1	662761	0	G	C	consensus_score=90.3	frequency=1	major_base=C	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	3009	.	1	663921	0	G	A	consensus_score=211.2	frequency=1	major_base=A	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	3010	.	1	666236	0	C	T	consensus_score=294.0	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	3011	.	1	666431	0	G	A	consensus_score=271.9	frequency=1	major_base=A	major_cov=61/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/32
RA	3012	.	1	667115	0	C	T	bias_e_value=944010	bias_p_value=0.4472	consensus_score=343.3	fisher_strand_p_value=0.156737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.837e-01	minor_base=A	minor_cov=2/0	new_cov=47/74	polymorphism_frequency=9.837e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/74
RA	3013	.	1	667424	0	T	C	consensus_score=342.1	frequency=1	major_base=C	major_cov=48/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/69
RA	3014	.	1	668725	0	C	T	consensus_score=357.2	frequency=1	major_base=T	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	3015	.	1	669728	1	.	G	bias_e_value=1324450	bias_p_value=0.627422	consensus_score=282.1	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=G	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	3016	.	1	669728	2	.	T	bias_e_value=1324450	bias_p_value=0.627422	consensus_score=288.4	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=T	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	3017	.	1	670601	0	A	G	consensus_score=385.5	frequency=1	major_base=G	major_cov=59/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/72
RA	3018	.	1	674372	0	T	G	bias_e_value=4.8943e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.9	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	3019	.	1	674399	0	T	G	bias_e_value=3.69205	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.6	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	3020	.	1	675635	0	A	G	consensus_score=385.5	frequency=1	major_base=G	major_cov=64/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/63
RA	3021	.	1	676383	0	C	T	consensus_score=296.0	frequency=1	major_base=T	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	3022	.	1	678410	0	A	T	bias_e_value=2110930	bias_p_value=1	consensus_score=320.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/47	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=63/47	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/47
RA	3023	.	1	679503	0	C	A	bias_e_value=1734250	bias_p_value=0.821555	consensus_score=377.1	fisher_strand_p_value=0.465649	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/70	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=60/70	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/70
RA	3024	.	1	681759	0	G	C	bias_e_value=2110930	bias_p_value=1	consensus_score=337.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/62	major_frequency=9.915e-01	minor_base=T	minor_cov=0/1	new_cov=54/62	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	3025	.	1	684996	0	T	C	consensus_score=275.4	frequency=1	major_base=C	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	3026	.	1	686754	0	T	G	consensus_score=363.5	frequency=1	major_base=G	major_cov=56/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/67
RA	3027	.	1	689365	0	T	C	consensus_score=322.3	frequency=1	major_base=C	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	3028	.	1	689500	0	A	G	consensus_score=280.7	frequency=1	major_base=G	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	3029	.	1	689707	0	A	G	consensus_score=299.2	frequency=1	major_base=G	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	3030	.	1	691379	0	G	A	consensus_score=234.1	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	3031	.	1	691874	0	C	G	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=321.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=G	major_cov=60/46	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=60/46	polymorphism_frequency=9.907e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	3032	.	1	692747	0	A	G	bias_e_value=2109980	bias_p_value=0.99955	consensus_score=277.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970158	major_base=G	major_cov=53/44	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=53/44	polymorphism_frequency=9.898e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=54/44
RA	3033	.	1	695627	0	T	C	consensus_score=226.9	frequency=1	major_base=C	major_cov=47/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/28
RA	3034	.	1	696014	0	G	A	consensus_score=249.8	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	3035	.	1	697917	0	A	G	consensus_score=296.1	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	3036	.	1	698183	0	C	T	bias_e_value=1561850	bias_p_value=0.739885	consensus_score=224.2	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=0.816396	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=36/43
RA	3037	.	1	698640	0	A	G	consensus_score=198.7	frequency=1	major_base=G	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	3038	.	1	698699	0	A	G	consensus_score=228.6	frequency=1	major_base=G	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	3039	.	1	700412	0	G	A	consensus_score=136.1	frequency=1	major_base=A	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3040	.	1	701753	0	T	C	consensus_score=316.8	frequency=1	major_base=C	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	3041	.	1	702320	0	C	T	consensus_score=238.2	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	3042	.	1	704881	0	A	C	consensus_score=78.7	frequency=1	major_base=C	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	3043	.	1	704947	0	C	T	consensus_score=23.7	deleted=1	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	3044	.	1	704968	0	C	T	consensus_score=11.8	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3045	.	1	705269	0	A	G	consensus_score=231.7	frequency=1	major_base=G	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	3046	.	1	705270	0	C	T	consensus_score=223.5	frequency=1	major_base=T	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	3047	.	1	705275	0	G	T	consensus_score=243.8	frequency=1	major_base=T	major_cov=57/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/68
RA	3048	.	1	705395	0	C	T	consensus_score=182.2	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	3049	.	1	709541	0	C	T	consensus_score=170.9	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	3050	.	1	709956	0	A	G	consensus_score=207.9	frequency=1	major_base=G	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3051	.	1	710571	0	G	T	bias_e_value=0.0729818	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	3052	.	1	710591	0	C	T	bias_e_value=0.073059	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.4	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	3053	.	1	711045	0	T	C	consensus_score=366.6	frequency=1	major_base=C	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	3054	.	1	711779	0	T	C	consensus_score=189.2	frequency=1	major_base=C	major_cov=40/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/25
RA	3055	.	1	712621	0	T	C	consensus_score=278.6	frequency=1	major_base=C	major_cov=54/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	3056	.	1	714324	0	A	G	consensus_score=114.4	frequency=1	major_base=G	major_cov=15/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	3057	.	1	714361	0	T	.	consensus_score=72.7	deleted=1	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	3058	.	1	714370	0	T	C	consensus_score=45.7	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	3059	.	1	714379	0	A	C	consensus_score=44.5	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	3060	.	1	714767	0	A	G	consensus_score=119.3	frequency=1	major_base=G	major_cov=21/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/36
RA	3061	.	1	714768	0	C	T	consensus_score=114.4	frequency=1	major_base=T	major_cov=21/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/36
RA	3062	.	1	714773	0	G	T	consensus_score=127.2	frequency=1	major_base=T	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	3063	.	1	714834	0	G	A	consensus_score=229.0	frequency=1	major_base=A	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	3064	.	1	716329	0	G	T	consensus_score=126.2	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	3065	.	1	716834	0	C	T	consensus_score=229.4	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	3066	.	1	717072	0	T	C	consensus_score=182.4	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	3067	.	1	717575	0	T	C	consensus_score=192.9	frequency=1	major_base=C	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	3068	.	1	721855	0	G	T	consensus_score=130.0	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	3069	.	1	721858	0	T	C	consensus_score=144.9	frequency=1	major_base=C	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	3070	.	1	721950	0	A	G	consensus_score=62.7	frequency=1	major_base=G	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	3071	.	1	727427	1	.	T	consensus_score=165.3	frequency=1	major_base=T	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	3072	.	1	729117	0	T	C	bias_e_value=1486230	bias_p_value=0.704061	consensus_score=97.1	fisher_strand_p_value=0.348676	frequency=1	ks_quality_p_value=0.967874	major_base=C	major_cov=21/24	major_frequency=9.184e-01	minor_base=T	minor_cov=3/1	new_cov=21/24	polymorphism_frequency=9.184e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=3/1	total_cov=24/25
RA	3073	.	1	729128	0	A	T	bias_e_value=2110840	bias_p_value=0.999955	consensus_score=100.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990531	major_base=T	major_cov=19/24	major_frequency=9.773e-01	minor_base=A	minor_cov=0/1	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=19/25
RA	3074	.	1	729180	0	T	G	bias_e_value=2108340	bias_p_value=0.998772	consensus_score=64.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.950846	major_base=G	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=14/18
RA	3075	.	1	729184	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=61.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=14/18
RA	3076	.	1	729190	0	C	A	bias_e_value=2110930	bias_p_value=1	consensus_score=33.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=7/15
RA	3077	.	1	729192	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=33.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=7/15
RA	3078	.	1	729195	0	T	C	consensus_score=36.1	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3079	.	1	729198	0	T	C	consensus_score=36.4	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3080	.	1	729200	0	G	A	consensus_score=36.3	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3081	.	1	729204	0	T	G	consensus_score=36.2	frequency=1	major_base=G	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3082	.	1	729206	0	A	T	consensus_score=36.1	frequency=1	major_base=T	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3083	.	1	729207	0	A	C	consensus_score=36.0	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	3084	.	1	729219	1	.	C	consensus_score=36.6	frequency=1	major_base=C	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	3085	.	1	729219	2	.	T	consensus_score=36.4	frequency=1	major_base=T	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	3086	.	1	729226	0	C	A	consensus_score=36.2	frequency=1	major_base=A	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	3087	.	1	735219	0	G	A	consensus_score=282.4	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	3088	.	1	739352	0	T	C	consensus_score=260.3	frequency=1	major_base=C	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	3089	.	1	740669	0	G	A	consensus_score=249.9	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	3090	.	1	746620	0	G	T	consensus_score=302.6	frequency=1	major_base=T	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	3091	.	1	748604	0	C	T	bias_e_value=2110870	bias_p_value=0.99997	consensus_score=383.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992278	major_base=T	major_cov=68/60	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=68/60	polymorphism_frequency=9.922e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=69/60
RA	3092	.	1	749432	0	T	C	consensus_score=299.6	frequency=1	major_base=C	major_cov=41/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/57
RA	3093	.	1	750925	0	T	C	consensus_score=312.6	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	3094	.	1	751438	0	G	A	consensus_score=315.7	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	3095	.	1	752017	0	T	C	bias_e_value=1667200	bias_p_value=0.789791	consensus_score=252.8	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=0.987281	major_base=C	major_cov=50/37	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=50/37	polymorphism_frequency=9.886e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=50/38
RA	3096	.	1	752644	0	C	T	consensus_score=287.3	frequency=1	major_base=T	major_cov=62/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/36
RA	3097	.	1	753423	0	A	G	consensus_score=393.2	frequency=1	major_base=G	major_cov=84/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/52
RA	3098	.	1	753505	0	A	G	consensus_score=401.9	frequency=1	major_base=G	major_cov=76/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/60
RA	3099	.	1	755606	0	C	T	consensus_score=102.1	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	3100	.	1	756496	0	C	T	consensus_score=360.2	frequency=1	major_base=T	major_cov=68/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/51
RA	3101	.	1	757845	0	G	A	consensus_score=289.2	frequency=1	major_base=A	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	3102	.	1	758059	0	T	A	bias_e_value=0.00927106	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	3103	.	1	758659	0	C	A	consensus_score=321.8	frequency=1	major_base=A	major_cov=56/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/55
RA	3104	.	1	760117	0	A	G	consensus_score=162.0	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	3105	.	1	760595	0	T	C	consensus_score=232.8	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3106	.	1	763024	0	A	G	consensus_score=316.9	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	3107	.	1	764725	0	A	C	consensus_score=246.7	frequency=1	major_base=C	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	3108	.	1	767351	0	C	T	consensus_score=259.7	frequency=1	major_base=T	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	3109	.	1	770191	0	C	T	consensus_score=226.7	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	3110	.	1	770361	0	C	T	consensus_score=255.0	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3111	.	1	770965	0	C	T	consensus_score=246.8	frequency=1	major_base=T	major_cov=53/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/32
RA	3112	.	1	774328	0	A	T	bias_e_value=3.92824e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.3	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	3113	.	1	777433	0	C	A	consensus_score=208.8	frequency=1	major_base=A	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	3114	.	1	777646	0	T	C	consensus_score=244.7	frequency=1	major_base=C	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	3115	.	1	778532	0	C	T	consensus_score=168.6	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3116	.	1	778691	0	A	G	consensus_score=251.4	frequency=1	major_base=G	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	3117	.	1	779074	0	C	T	consensus_score=170.7	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	3118	.	1	784418	0	A	G	consensus_score=187.1	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	3119	.	1	787093	0	G	A	consensus_score=113.6	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	3120	.	1	788833	0	A	G	consensus_score=233.4	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	3121	.	1	790888	0	G	T	consensus_score=245.9	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	3122	.	1	790914	0	G	A	consensus_score=242.4	frequency=1	major_base=A	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3123	.	1	792450	0	C	T	consensus_score=188.3	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3124	.	1	793076	0	T	G	consensus_score=209.6	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	3125	.	1	794936	0	C	T	consensus_score=227.7	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	3126	.	1	795848	0	A	G	consensus_score=174.5	frequency=1	major_base=G	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	3127	.	1	796162	0	C	T	consensus_score=123.1	frequency=1	major_base=T	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	3128	.	1	796289	0	G	A	consensus_score=39.6	deleted=1	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3129	.	1	803478	0	A	G	consensus_score=191.7	frequency=1	major_base=G	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	3130	.	1	805884	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=277.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999176	major_base=C	major_cov=47/51	major_frequency=9.899e-01	minor_base=T	minor_cov=0/1	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/52
RA	3131	.	1	807843	0	T	C	bias_e_value=1578140	bias_p_value=0.747601	consensus_score=304.4	fisher_strand_p_value=0.495244	frequency=1	ks_quality_p_value=0.767131	major_base=C	major_cov=50/50	major_frequency=9.804e-01	minor_base=A	minor_cov=2/0	new_cov=50/50	polymorphism_frequency=9.804e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	3132	.	1	808398	0	A	G	consensus_score=181.6	frequency=1	major_base=G	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3133	.	1	809527	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	3134	.	1	809693	0	G	T	consensus_score=285.0	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	3135	.	1	810518	0	G	A	bias_e_value=0.139628	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	3136	.	1	812930	0	G	T	bias_e_value=1733100	bias_p_value=0.821009	consensus_score=240.2	fisher_strand_p_value=0.46988	frequency=1	ks_quality_p_value=0.989477	major_base=T	major_cov=44/38	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=44/38	polymorphism_frequency=9.880e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=44/39
RA	3137	.	1	813342	0	A	G	consensus_score=199.9	frequency=1	major_base=G	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	3138	.	1	814159	0	G	A	consensus_score=217.1	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	3139	.	1	814163	0	C	T	consensus_score=213.6	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	3140	.	1	815944	0	G	T	bias_e_value=0.179349	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.1	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	3141	.	1	816048	0	G	A	consensus_score=210.9	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	3142	.	1	816460	0	C	T	consensus_score=230.2	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	3143	.	1	816598	0	C	T	bias_e_value=0.00816461	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.8	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	3144	.	1	817104	0	A	G	consensus_score=262.6	frequency=1	major_base=G	major_cov=57/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/36
RA	3145	.	1	824464	0	T	C	consensus_score=212.8	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3146	.	1	824671	0	C	.	bias_e_value=2110930	bias_p_value=0.999996	consensus_score=305.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997159	major_base=.	major_cov=37/37	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=37/37	polymorphism_frequency=9.737e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3147	.	1	824723	0	C	A	bias_e_value=2107720	bias_p_value=0.99848	consensus_score=268.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945369	major_base=A	major_cov=44/45	major_frequency=9.889e-01	minor_base=.	minor_cov=0/1	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	3148	.	1	825336	0	T	C	consensus_score=208.1	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3149	.	1	826656	0	T	C	consensus_score=184.4	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	3150	.	1	827238	0	T	G	consensus_score=216.3	frequency=1	major_base=G	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	3151	.	1	828837	0	C	T	consensus_score=82.9	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	3152	.	1	829535	0	C	T	consensus_score=268.0	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	3153	.	1	831730	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	3154	.	1	833990	0	T	C	consensus_score=191.1	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	3155	.	1	836415	0	T	C	consensus_score=232.5	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3156	.	1	838663	0	T	.	consensus_score=348.1	frequency=1	major_base=.	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3157	.	1	841646	0	A	.	consensus_score=374.7	frequency=1	major_base=.	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	3158	.	1	842931	0	T	G	consensus_score=272.6	frequency=1	major_base=G	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	3159	.	1	843179	0	A	C	bias_e_value=0.00138642	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.0	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	3160	.	1	843801	0	G	A	consensus_score=214.7	frequency=1	major_base=A	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	3161	.	1	846412	0	A	G	consensus_score=287.6	frequency=1	major_base=G	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	3162	.	1	847121	0	G	A	consensus_score=258.1	frequency=1	major_base=A	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	3163	.	1	848149	0	G	A	consensus_score=255.3	frequency=1	major_base=A	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	3164	.	1	849115	0	T	C	consensus_score=323.5	frequency=1	major_base=C	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	3165	.	1	852844	0	A	G	consensus_score=256.7	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	3166	.	1	853077	0	T	C	consensus_score=314.5	frequency=1	major_base=C	major_cov=54/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/54
RA	3167	.	1	853097	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=350.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=53/64	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=53/64	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/65
RA	3168	.	1	853220	0	C	T	consensus_score=302.6	frequency=1	major_base=T	major_cov=39/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/66
RA	3169	.	1	854719	0	C	A	consensus_score=337.9	frequency=1	major_base=A	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	3170	.	1	855367	0	T	C	consensus_score=186.1	frequency=1	major_base=C	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	3171	.	1	857102	0	T	C	consensus_score=345.6	frequency=1	major_base=C	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	3172	.	1	857145	0	A	G	consensus_score=299.3	frequency=1	major_base=G	major_cov=67/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/41
RA	3173	.	1	858696	0	T	C	consensus_score=365.7	frequency=1	major_base=C	major_cov=55/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/70
RA	3174	.	1	864374	0	C	T	consensus_score=221.6	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3175	.	1	865519	0	A	G	consensus_score=267.4	frequency=1	major_base=G	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3176	.	1	867753	0	C	T	consensus_score=275.7	frequency=1	major_base=T	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	3177	.	1	868094	1	.	T	consensus_score=208.5	frequency=1	major_base=T	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	3178	.	1	869732	0	T	C	consensus_score=229.4	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	3179	.	1	870117	0	A	G	consensus_score=301.3	frequency=1	major_base=G	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	3180	.	1	870365	0	A	C	consensus_score=335.7	frequency=1	major_base=C	major_cov=54/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/60
RA	3181	.	1	871809	0	T	G	bias_e_value=0.00517819	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.3	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	3182	.	1	872390	0	C	T	consensus_score=126.3	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	3183	.	1	872460	0	G	C	consensus_score=162.9	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3184	.	1	872476	0	C	T	consensus_score=171.8	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	3185	.	1	872996	0	C	T	consensus_score=369.6	frequency=1	major_base=T	major_cov=61/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/60
RA	3186	.	1	874467	0	G	T	consensus_score=271.2	frequency=1	major_base=T	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	3187	.	1	879216	0	T	C	consensus_score=204.1	frequency=1	major_base=C	major_cov=42/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/25
RA	3188	.	1	880998	0	A	G	consensus_score=166.8	frequency=1	major_base=G	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	3189	.	1	881837	0	T	C	consensus_score=306.4	frequency=1	major_base=C	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3190	.	1	884330	0	T	.	consensus_score=102.9	frequency=1	major_base=.	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	3191	.	1	884999	0	T	C	consensus_score=205.5	frequency=1	major_base=C	major_cov=46/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/24
RA	3192	.	1	885016	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=190.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/25	major_frequency=9.855e-01	minor_base=G	minor_cov=1/0	new_cov=43/25	polymorphism_frequency=9.855e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=44/25
RA	3193	.	1	885034	0	C	A	consensus_score=203.8	frequency=1	major_base=A	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	3194	.	1	885044	0	A	G	consensus_score=208.3	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	3195	.	1	885056	0	A	G	consensus_score=186.2	frequency=1	major_base=G	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	3196	.	1	885077	0	C	T	consensus_score=143.7	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3197	.	1	885079	0	G	A	consensus_score=151.3	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3198	.	1	885080	0	G	T	consensus_score=151.1	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3199	.	1	885084	0	A	G	consensus_score=159.6	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3200	.	1	885086	0	T	G	consensus_score=159.3	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3201	.	1	885089	0	G	A	consensus_score=152.0	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3202	.	1	885095	0	C	T	consensus_score=195.9	frequency=1	major_base=T	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3203	.	1	885098	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3204	.	1	885115	0	C	T	consensus_score=209.9	frequency=1	major_base=T	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	3205	.	1	885137	0	T	C	consensus_score=228.7	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3206	.	1	885206	0	G	A	consensus_score=202.3	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3207	.	1	885210	0	T	C	consensus_score=203.1	frequency=1	major_base=C	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3208	.	1	885213	0	C	T	consensus_score=202.7	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3209	.	1	885236	0	C	T	consensus_score=198.7	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	3210	.	1	885257	0	A	G	consensus_score=187.3	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3211	.	1	885260	0	C	T	consensus_score=185.9	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3212	.	1	885272	0	C	G	consensus_score=199.7	frequency=1	major_base=G	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	3213	.	1	885288	0	T	C	consensus_score=209.4	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	3214	.	1	885311	0	T	C	consensus_score=210.7	frequency=1	major_base=C	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3215	.	1	885315	0	G	A	consensus_score=219.5	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3216	.	1	885380	0	G	A	consensus_score=237.2	frequency=1	major_base=A	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	3217	.	1	885441	0	T	G	consensus_score=200.7	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	3218	.	1	885448	0	T	A	consensus_score=202.8	frequency=1	major_base=A	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3219	.	1	885470	0	T	A	bias_e_value=2110930	bias_p_value=1	consensus_score=198.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/36	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=35/36	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	3220	.	1	885500	0	C	T	consensus_score=186.3	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	3221	.	1	885506	0	T	.	bias_e_value=57428.5	bias_p_value=0.0272053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.8	fisher_strand_p_value=0.00420366	frequency=2.388e-01	ks_quality_p_value=1	major_base=T	major_cov=31/20	major_frequency=7.612e-01	minor_base=.	minor_cov=3/13	new_cov=3/13	polymorphism_frequency=2.388e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=31/20	total_cov=34/33
RA	3222	.	1	885507	0	T	.	bias_e_value=1898840	bias_p_value=0.899524	consensus_score=47.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=T	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3223	.	1	885508	0	A	.	bias_e_value=2110930	bias_p_value=1	consensus_score=48.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=A	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3224	.	1	885511	0	T	.	consensus_score=260.7	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3225	.	1	885512	0	T	.	consensus_score=260.7	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3226	.	1	885520	0	C	T	consensus_score=146.3	frequency=1	major_base=T	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	3227	.	1	885525	0	A	G	consensus_score=176.1	frequency=1	major_base=G	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3228	.	1	885530	0	C	T	consensus_score=166.8	frequency=1	major_base=T	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3229	.	1	885542	0	A	G	consensus_score=155.7	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3230	.	1	885558	0	T	C	consensus_score=123.0	frequency=1	major_base=C	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3231	.	1	885563	0	A	G	consensus_score=133.3	frequency=1	major_base=G	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3232	.	1	885565	0	G	A	consensus_score=138.4	frequency=1	major_base=A	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3233	.	1	885574	0	C	A	consensus_score=134.4	frequency=1	major_base=A	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	3234	.	1	885622	0	G	A	consensus_score=79.9	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	3235	.	1	885651	0	C	T	consensus_score=136.1	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3236	.	1	885654	0	G	C	consensus_score=130.4	frequency=1	major_base=C	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3237	.	1	885684	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3238	.	1	885685	0	A	G	consensus_score=144.8	frequency=1	major_base=G	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3239	.	1	885692	1	.	G	consensus_score=126.2	frequency=1	major_base=G	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3240	.	1	885697	0	T	.	consensus_score=186.9	frequency=1	major_base=.	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3241	.	1	885698	0	T	C	consensus_score=128.0	frequency=1	major_base=C	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3242	.	1	885717	0	C	T	consensus_score=177.7	frequency=1	major_base=T	major_cov=47/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/15
RA	3243	.	1	885727	0	C	A	consensus_score=181.2	frequency=1	major_base=A	major_cov=48/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/15
RA	3244	.	1	885743	0	T	C	consensus_score=186.9	frequency=1	major_base=C	major_cov=46/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/19
RA	3245	.	1	885777	0	A	G	consensus_score=211.4	frequency=1	major_base=G	major_cov=48/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/20
RA	3246	.	1	885795	0	G	A	consensus_score=195.5	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	3247	.	1	885799	0	A	G	consensus_score=217.3	frequency=1	major_base=G	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	3248	.	1	885832	0	C	T	consensus_score=205.2	frequency=1	major_base=T	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	3249	.	1	885849	0	A	G	consensus_score=207.8	frequency=1	major_base=G	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	3250	.	1	885873	0	T	C	consensus_score=177.2	frequency=1	major_base=C	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3251	.	1	885874	0	A	G	consensus_score=177.6	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3252	.	1	885885	0	C	T	consensus_score=191.6	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3253	.	1	885900	0	G	C	consensus_score=189.5	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3254	.	1	885901	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3255	.	1	885931	0	T	G	consensus_score=194.5	frequency=1	major_base=G	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3256	.	1	885949	0	G	C	bias_e_value=2110930	bias_p_value=1	consensus_score=171.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/27	major_frequency=9.833e-01	minor_base=A	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3257	.	1	885951	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=168.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999435	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=T	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3258	.	1	885960	0	T	C	consensus_score=154.6	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3259	.	1	885975	0	T	G	consensus_score=153.1	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	3260	.	1	886071	0	C	T	consensus_score=271.1	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3261	.	1	886083	0	T	C	consensus_score=257.3	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	3262	.	1	886095	0	C	T	bias_e_value=1752700	bias_p_value=0.830296	consensus_score=256.3	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/46	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=41/46	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/46
RA	3263	.	1	886104	0	G	T	consensus_score=252.6	frequency=1	major_base=T	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	3264	.	1	886119	0	C	T	bias_e_value=647629	bias_p_value=0.306798	consensus_score=228.9	fisher_strand_p_value=0.0900343	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/48	major_frequency=9.659e-01	minor_base=G	minor_cov=3/0	new_cov=37/48	polymorphism_frequency=9.659e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3265	.	1	886131	0	T	C	consensus_score=262.3	frequency=1	major_base=C	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	3266	.	1	886144	0	G	A	consensus_score=266.5	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	3267	.	1	886149	0	A	G	consensus_score=268.2	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	3268	.	1	886233	0	C	T	bias_e_value=1695990	bias_p_value=0.80343	consensus_score=185.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.442688	major_base=T	major_cov=27/43	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=27/43	polymorphism_frequency=9.859e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	3269	.	1	886263	0	C	T	consensus_score=149.2	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	3270	.	1	886272	0	C	T	consensus_score=126.9	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	3271	.	1	886277	0	T	C	consensus_score=112.2	frequency=1	major_base=C	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	3272	.	1	886290	0	G	A	consensus_score=115.5	frequency=1	major_base=A	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	3273	.	1	886304	0	G	C	consensus_score=104.7	frequency=1	major_base=C	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3274	.	1	886305	0	C	T	consensus_score=96.5	frequency=1	major_base=T	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3275	.	1	886318	0	C	T	consensus_score=108.0	frequency=1	major_base=T	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	3276	.	1	886326	0	C	T	consensus_score=99.3	frequency=1	major_base=T	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3277	.	1	886329	0	T	C	consensus_score=106.8	frequency=1	major_base=C	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3278	.	1	886330	0	G	A	consensus_score=98.8	frequency=1	major_base=A	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3279	.	1	886335	0	C	T	consensus_score=132.9	frequency=1	major_base=T	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	3280	.	1	886355	0	G	A	consensus_score=145.1	frequency=1	major_base=A	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	3281	.	1	886366	0	T	C	consensus_score=148.6	frequency=1	major_base=C	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3282	.	1	886368	0	C	T	consensus_score=144.4	frequency=1	major_base=T	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3283	.	1	886392	0	G	A	consensus_score=156.7	frequency=1	major_base=A	major_cov=35/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/18
RA	3284	.	1	886404	0	T	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=39/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/17
RA	3285	.	1	886409	0	T	C	consensus_score=156.0	frequency=1	major_base=C	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3286	.	1	886410	0	G	A	consensus_score=151.9	frequency=1	major_base=A	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3287	.	1	886422	0	C	T	consensus_score=197.1	frequency=1	major_base=T	major_cov=46/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/21
RA	3288	.	1	886428	0	A	G	consensus_score=197.0	frequency=1	major_base=G	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3289	.	1	886430	0	T	C	consensus_score=195.4	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3290	.	1	886434	0	T	C	consensus_score=194.4	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3291	.	1	886485	0	C	T	consensus_score=190.4	frequency=1	major_base=T	major_cov=44/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/21
RA	3292	.	1	886500	0	C	T	consensus_score=184.5	frequency=1	major_base=T	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3293	.	1	886503	0	A	G	consensus_score=180.2	frequency=1	major_base=G	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3294	.	1	886521	0	C	T	consensus_score=203.3	frequency=1	major_base=T	major_cov=45/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/24
RA	3295	.	1	886527	0	T	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	3296	.	1	886543	0	T	C	consensus_score=210.3	frequency=1	major_base=C	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	3297	.	1	886559	0	C	T	consensus_score=231.9	frequency=1	major_base=T	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	3298	.	1	886581	0	G	T	consensus_score=210.0	frequency=1	major_base=T	major_cov=47/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/25
RA	3299	.	1	886598	0	C	T	consensus_score=177.1	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3300	.	1	886599	0	A	G	consensus_score=183.3	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3301	.	1	886605	0	C	T	consensus_score=182.9	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3302	.	1	886608	0	C	T	consensus_score=180.8	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3303	.	1	886611	0	C	T	consensus_score=180.4	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3304	.	1	886618	0	C	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	3305	.	1	886630	0	A	G	consensus_score=207.5	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	3306	.	1	886688	0	G	A	consensus_score=221.8	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3307	.	1	886689	0	G	A	consensus_score=220.8	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3308	.	1	886696	0	A	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3309	.	1	886701	0	C	T	consensus_score=223.7	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3310	.	1	886714	0	C	T	consensus_score=239.6	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3311	.	1	886717	0	T	C	consensus_score=242.8	frequency=1	major_base=C	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3312	.	1	886723	0	T	C	consensus_score=229.3	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3313	.	1	886725	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3314	.	1	886731	0	C	G	consensus_score=211.3	frequency=1	major_base=G	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3315	.	1	886734	0	T	C	consensus_score=215.4	frequency=1	major_base=C	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3316	.	1	886742	0	A	G	consensus_score=232.9	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	3317	.	1	886751	0	A	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	3318	.	1	886766	0	A	T	consensus_score=209.2	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3319	.	1	886770	0	C	T	consensus_score=213.2	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3320	.	1	886789	0	G	A	consensus_score=199.0	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	3321	.	1	886818	0	T	C	consensus_score=166.6	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3322	.	1	886820	0	A	G	consensus_score=168.2	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3323	.	1	886821	0	C	T	consensus_score=166.1	frequency=1	major_base=T	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3324	.	1	886824	0	G	A	consensus_score=166.0	frequency=1	major_base=A	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3325	.	1	886851	0	C	T	consensus_score=167.5	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3326	.	1	886860	0	A	C	consensus_score=166.2	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3327	.	1	886875	0	G	A	consensus_score=145.1	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	3328	.	1	886890	0	A	G	consensus_score=140.1	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	3329	.	1	886899	0	A	G	consensus_score=126.0	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3330	.	1	886901	0	C	A	consensus_score=123.6	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3331	.	1	886902	0	G	A	consensus_score=123.8	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3332	.	1	886909	0	A	C	consensus_score=127.5	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3333	.	1	886914	0	C	T	consensus_score=121.7	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3334	.	1	886931	0	C	T	consensus_score=76.8	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	3335	.	1	886950	0	G	T	consensus_score=88.9	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	3336	.	1	886966	0	T	G	consensus_score=90.2	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	3337	.	1	886970	0	G	C	consensus_score=86.7	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3338	.	1	886973	0	T	C	consensus_score=86.8	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3339	.	1	886974	0	C	G	consensus_score=87.6	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3340	.	1	886983	0	C	G	consensus_score=84.6	frequency=1	major_base=G	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	3341	.	1	886989	0	G	A	consensus_score=77.2	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3342	.	1	886990	0	C	T	consensus_score=79.0	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3343	.	1	886992	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3344	.	1	887007	0	C	T	consensus_score=81.9	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3345	.	1	887009	0	A	G	consensus_score=80.6	frequency=1	major_base=G	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3346	.	1	887014	0	G	A	consensus_score=85.8	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	3347	.	1	887028	0	A	G	consensus_score=93.5	frequency=1	major_base=G	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	3348	.	1	887045	0	C	T	consensus_score=90.0	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3349	.	1	887046	0	G	A	consensus_score=89.6	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3350	.	1	887061	0	C	T	consensus_score=101.7	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	3351	.	1	887076	0	T	C	consensus_score=100.9	frequency=1	major_base=C	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	3352	.	1	887096	0	A	C	consensus_score=149.9	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3353	.	1	887103	0	G	T	consensus_score=147.7	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3354	.	1	887104	0	A	G	consensus_score=148.4	frequency=1	major_base=G	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3355	.	1	887106	0	T	C	consensus_score=141.3	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3356	.	1	887108	0	C	T	consensus_score=138.0	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3357	.	1	887118	0	T	C	consensus_score=155.9	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3358	.	1	887130	0	G	C	consensus_score=174.3	frequency=1	major_base=C	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3359	.	1	887133	0	C	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3360	.	1	887145	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3361	.	1	887151	0	A	G	consensus_score=193.9	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3362	.	1	887154	0	C	T	consensus_score=195.5	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3363	.	1	887184	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3364	.	1	887185	0	A	G	consensus_score=237.6	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3365	.	1	887190	0	A	C	consensus_score=247.3	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	3366	.	1	887205	0	G	T	consensus_score=250.8	frequency=1	major_base=T	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	3367	.	1	887230	0	T	C	consensus_score=244.6	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3368	.	1	887271	0	T	C	consensus_score=237.7	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3369	.	1	887305	0	A	C	consensus_score=240.3	frequency=1	major_base=C	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3370	.	1	887314	0	C	T	consensus_score=228.7	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3371	.	1	887319	0	C	T	consensus_score=206.4	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3372	.	1	887322	0	T	C	consensus_score=201.9	frequency=1	major_base=C	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3373	.	1	887325	0	C	T	consensus_score=199.9	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3374	.	1	887335	0	A	G	consensus_score=210.8	frequency=1	major_base=G	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	3375	.	1	887356	0	G	A	consensus_score=218.0	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	3376	.	1	887363	0	A	G	consensus_score=231.6	frequency=1	major_base=G	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	3377	.	1	887374	0	T	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	3378	.	1	887406	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	3379	.	1	887421	0	A	C	consensus_score=202.0	frequency=1	major_base=C	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3380	.	1	887457	0	G	A	consensus_score=182.3	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	3381	.	1	887476	0	C	T	consensus_score=181.0	frequency=1	major_base=T	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	3382	.	1	887481	0	G	A	consensus_score=185.5	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3383	.	1	887484	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3384	.	1	887489	0	A	G	consensus_score=176.6	frequency=1	major_base=G	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3385	.	1	887493	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3386	.	1	887494	0	G	A	consensus_score=174.8	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3387	.	1	887497	0	T	C	consensus_score=182.7	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3388	.	1	887505	0	T	C	consensus_score=193.0	frequency=1	major_base=C	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3389	.	1	887517	0	T	G	consensus_score=200.0	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	3390	.	1	887526	0	G	A	consensus_score=171.6	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3391	.	1	887529	0	C	A	consensus_score=173.2	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3392	.	1	887531	0	A	G	consensus_score=174.0	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3393	.	1	887537	0	G	A	consensus_score=172.1	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3394	.	1	887538	0	T	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3395	.	1	887541	0	C	T	consensus_score=171.1	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3396	.	1	887544	0	C	T	consensus_score=172.8	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3397	.	1	887557	0	A	C	consensus_score=215.0	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	3398	.	1	887565	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=196.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/36	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/37
RA	3399	.	1	887580	0	T	C	consensus_score=190.7	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3400	.	1	887582	0	C	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3401	.	1	887583	0	A	G	consensus_score=202.6	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3402	.	1	887586	0	T	C	consensus_score=193.6	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3403	.	1	887589	0	T	C	consensus_score=200.6	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3404	.	1	887652	0	A	T	consensus_score=191.9	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3405	.	1	887653	0	C	T	consensus_score=196.3	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3406	.	1	887679	0	A	G	consensus_score=189.1	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	3407	.	1	887697	0	G	A	consensus_score=179.5	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3408	.	1	887700	0	A	G	consensus_score=176.8	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3409	.	1	887723	0	G	.	bias_e_value=2110930	bias_p_value=1	consensus_score=258.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3410	.	1	887725	1	.	A	bias_e_value=2110930	bias_p_value=1	consensus_score=175.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/27	major_frequency=9.841e-01	minor_base=.	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3411	.	1	887751	0	C	T	consensus_score=169.0	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	3412	.	1	887781	0	G	A	consensus_score=156.9	frequency=1	major_base=A	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3413	.	1	887787	0	G	C	consensus_score=152.3	frequency=1	major_base=C	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3414	.	1	887833	0	G	A	consensus_score=161.6	frequency=1	major_base=A	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	3415	.	1	887844	0	A	G	consensus_score=148.5	frequency=1	major_base=G	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	3416	.	1	887865	0	A	G	consensus_score=171.0	frequency=1	major_base=G	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	3417	.	1	887871	0	A	G	consensus_score=182.2	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	3418	.	1	887877	0	C	T	consensus_score=175.2	frequency=1	major_base=T	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	3419	.	1	887883	0	G	A	consensus_score=171.0	frequency=1	major_base=A	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	3420	.	1	887891	0	G	A	consensus_score=172.0	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3421	.	1	887895	0	A	G	consensus_score=160.5	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	3422	.	1	887912	0	A	G	consensus_score=199.4	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3423	.	1	887919	0	G	A	consensus_score=205.9	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	3424	.	1	887934	0	T	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	3425	.	1	887938	0	C	T	consensus_score=206.3	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	3426	.	1	887949	0	G	A	consensus_score=202.6	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	3427	.	1	887967	0	G	A	consensus_score=214.7	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	3428	.	1	887975	0	T	C	consensus_score=199.7	frequency=1	major_base=C	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3429	.	1	887981	0	C	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3430	.	1	888007	0	A	G	consensus_score=199.7	frequency=1	major_base=G	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3431	.	1	888012	0	T	C	consensus_score=171.9	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3432	.	1	888013	0	T	C	consensus_score=170.9	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3433	.	1	888019	0	T	G	consensus_score=170.3	frequency=1	major_base=G	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3434	.	1	888021	0	C	T	consensus_score=166.9	frequency=1	major_base=T	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3435	.	1	888048	0	G	A	consensus_score=190.5	frequency=1	major_base=A	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	3436	.	1	888062	0	C	T	consensus_score=189.5	frequency=1	major_base=T	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3437	.	1	888091	0	T	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	3438	.	1	888102	0	G	A	consensus_score=219.2	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3439	.	1	888104	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3440	.	1	888121	0	A	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	3441	.	1	888135	0	A	G	consensus_score=219.0	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3442	.	1	888138	0	C	T	consensus_score=212.1	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3443	.	1	888154	0	C	A	consensus_score=201.8	frequency=1	major_base=A	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	3444	.	1	888169	0	C	T	bias_e_value=1775680	bias_p_value=0.841182	consensus_score=181.7	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/33	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=31/33	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=33/33
RA	3445	.	1	888172	0	A	G	consensus_score=187.2	frequency=1	major_base=G	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3446	.	1	888173	0	A	C	consensus_score=197.8	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3447	.	1	888219	0	C	T	consensus_score=200.4	frequency=1	major_base=T	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3448	.	1	888239	0	G	A	consensus_score=219.0	frequency=1	major_base=A	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	3449	.	1	888251	1	.	T	consensus_score=219.0	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	3450	.	1	888267	0	C	A	consensus_score=205.4	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3451	.	1	888272	0	G	A	consensus_score=208.3	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	3452	.	1	888283	0	C	T	consensus_score=209.7	frequency=1	major_base=T	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	3453	.	1	888316	0	G	C	consensus_score=207.8	frequency=1	major_base=C	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	3454	.	1	888340	0	A	C	consensus_score=169.6	frequency=1	major_base=C	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	3455	.	1	888343	0	C	T	consensus_score=164.9	frequency=1	major_base=T	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	3456	.	1	888364	0	A	G	consensus_score=180.6	frequency=1	major_base=G	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	3457	.	1	888373	0	A	G	consensus_score=180.3	frequency=1	major_base=G	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	3458	.	1	888388	0	T	C	consensus_score=173.1	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	3459	.	1	888391	0	T	C	consensus_score=180.8	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	3460	.	1	888400	0	C	T	consensus_score=165.9	frequency=1	major_base=T	major_cov=21/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/40
RA	3461	.	1	888409	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3462	.	1	888420	0	T	C	consensus_score=173.8	frequency=1	major_base=C	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3463	.	1	888425	0	G	A	consensus_score=166.6	frequency=1	major_base=A	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	3464	.	1	888447	0	G	A	consensus_score=156.7	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	3465	.	1	888451	0	A	C	consensus_score=143.2	frequency=1	major_base=C	major_cov=20/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/34
RA	3466	.	1	888509	0	T	C	consensus_score=131.4	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3467	.	1	888515	0	T	C	consensus_score=128.9	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	3468	.	1	888547	0	G	T	consensus_score=133.2	frequency=1	major_base=T	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3469	.	1	888551	0	G	C	consensus_score=135.3	frequency=1	major_base=C	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3470	.	1	888552	0	G	A	consensus_score=134.4	frequency=1	major_base=A	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3471	.	1	888559	0	C	A	consensus_score=145.7	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	3472	.	1	888681	0	C	T	consensus_score=140.2	frequency=1	major_base=T	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	3473	.	1	888736	0	A	.	consensus_score=134.0	frequency=1	major_base=.	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	3474	.	1	888783	0	A	G	consensus_score=146.7	frequency=1	major_base=G	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	3475	.	1	888792	0	C	T	consensus_score=139.4	frequency=1	major_base=T	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	3476	.	1	888845	0	C	T	consensus_score=188.2	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3477	.	1	888848	0	C	T	consensus_score=185.7	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3478	.	1	888866	0	G	T	consensus_score=202.8	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	3479	.	1	888871	0	T	C	consensus_score=207.4	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	3480	.	1	888937	0	C	T	consensus_score=224.0	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	3481	.	1	888974	0	T	C	consensus_score=260.6	frequency=1	major_base=C	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	3482	.	1	889016	0	C	T	consensus_score=270.9	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	3483	.	1	889020	0	C	T	consensus_score=263.3	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3484	.	1	889066	0	C	A	consensus_score=300.4	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	3485	.	1	889067	0	G	A	consensus_score=302.9	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	3486	.	1	889078	0	C	A	consensus_score=304.4	frequency=1	major_base=A	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	3487	.	1	889086	0	A	G	consensus_score=308.0	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	3488	.	1	889247	0	C	T	bias_e_value=1354620	bias_p_value=0.641718	consensus_score=208.5	fisher_strand_p_value=0.453333	frequency=1	ks_quality_p_value=0.626863	major_base=T	major_cov=33/41	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=33/41	polymorphism_frequency=9.867e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=34/41
RA	3489	.	1	889340	0	A	G	bias_e_value=1730370	bias_p_value=0.81972	consensus_score=210.5	fisher_strand_p_value=0.472222	frequency=1	ks_quality_p_value=0.981012	major_base=G	major_cov=38/33	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=38/33	polymorphism_frequency=9.861e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=38/34
RA	3490	.	1	889349	0	A	G	bias_e_value=1740500	bias_p_value=0.824519	consensus_score=224.1	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.991266	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=40/36
RA	3491	.	1	889538	0	T	C	bias_e_value=1667700	bias_p_value=0.790032	consensus_score=250.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.995421	major_base=C	major_cov=48/35	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=48/36
RA	3492	.	1	889759	0	C	T	consensus_score=205.9	frequency=1	major_base=T	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	3493	.	1	889780	0	A	C	consensus_score=216.1	frequency=1	major_base=C	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	3494	.	1	889924	0	T	C	bias_e_value=1035310	bias_p_value=0.490453	consensus_score=304.4	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.383816	major_base=C	major_cov=56/49	major_frequency=9.906e-01	minor_base=T	minor_cov=0/1	new_cov=56/49	polymorphism_frequency=9.906e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=56/50
RA	3495	.	1	890431	0	C	A	consensus_score=261.7	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	3496	.	1	891559	0	C	T	consensus_score=212.3	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	3497	.	1	892304	0	A	G	bias_e_value=1710260	bias_p_value=0.810192	consensus_score=236.9	fisher_strand_p_value=0.45122	frequency=1	ks_quality_p_value=0.999699	major_base=G	major_cov=36/45	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/45
RA	3498	.	1	895966	0	G	A	consensus_score=325.7	frequency=1	major_base=A	major_cov=62/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	3499	.	1	896279	0	C	G	consensus_score=290.4	frequency=1	major_base=G	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	3500	.	1	898386	0	A	C	consensus_score=315.3	frequency=1	major_base=C	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	3501	.	1	898391	0	T	C	consensus_score=316.1	frequency=1	major_base=C	major_cov=48/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/62
RA	3502	.	1	899038	0	T	C	consensus_score=214.5	frequency=1	major_base=C	major_cov=47/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/26
RA	3503	.	1	900009	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3504	.	1	901970	0	A	C	consensus_score=296.6	frequency=1	major_base=C	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	3505	.	1	903940	0	A	G	consensus_score=213.6	frequency=1	major_base=G	major_cov=28/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/43
RA	3506	.	1	906906	0	G	A	consensus_score=286.8	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	3507	.	1	907621	0	C	T	consensus_score=308.1	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	3508	.	1	908100	0	A	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	3509	.	1	910569	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	3510	.	1	911081	0	A	G	consensus_score=293.4	frequency=1	major_base=G	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	3511	.	1	913800	0	G	A	bias_e_value=0.000276362	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	3512	.	1	913814	0	A	T	bias_e_value=0.0234671	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.4	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	3513	.	1	917352	0	A	G	consensus_score=262.7	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	3514	.	1	917435	0	A	G	consensus_score=245.9	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	3515	.	1	917472	0	C	T	consensus_score=256.7	frequency=1	major_base=T	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	3516	.	1	926823	0	G	A	consensus_score=185.7	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3517	.	1	929282	0	T	C	consensus_score=139.3	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	3518	.	1	929703	0	G	A	consensus_score=282.5	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	3519	.	1	929855	0	T	C	consensus_score=348.2	frequency=1	major_base=C	major_cov=51/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/68
RA	3520	.	1	931165	0	C	T	consensus_score=254.3	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	3521	.	1	932644	0	A	G	bias_e_value=0.0138698	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	3522	.	1	932673	0	T	G	bias_e_value=0.00273303	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.5	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	3523	.	1	933058	0	A	G	consensus_score=321.4	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	3524	.	1	934231	0	C	T	consensus_score=384.9	frequency=1	major_base=T	major_cov=69/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	3525	.	1	934862	0	C	T	consensus_score=265.7	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	3526	.	1	935184	0	A	G	consensus_score=255.8	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	3527	.	1	937871	0	G	A	consensus_score=274.8	frequency=1	major_base=A	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	3528	.	1	940128	1	.	A	bias_e_value=2110920	bias_p_value=0.999991	consensus_score=271.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995846	major_base=A	major_cov=52/40	major_frequency=9.787e-01	minor_base=.	minor_cov=1/1	new_cov=52/40	polymorphism_frequency=9.787e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=53/41
RA	3529	.	1	940485	0	A	G	consensus_score=245.1	frequency=1	major_base=G	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	3530	.	1	940718	0	T	C	consensus_score=298.4	frequency=1	major_base=C	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	3531	.	1	941099	0	T	C	consensus_score=285.8	frequency=1	major_base=C	major_cov=37/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/62
RA	3532	.	1	941900	0	G	A	consensus_score=201.2	frequency=1	major_base=A	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	3533	.	1	942112	0	C	T	consensus_score=245.8	frequency=1	major_base=T	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	3534	.	1	944187	0	C	G	consensus_score=224.8	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3535	.	1	944390	1	.	T	consensus_score=218.3	frequency=1	major_base=T	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	3536	.	1	944455	0	A	G	consensus_score=208.1	frequency=1	major_base=G	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	3537	.	1	947976	0	A	G	consensus_score=272.4	frequency=1	major_base=G	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	3538	.	1	948779	0	A	G	consensus_score=281.4	frequency=1	major_base=G	major_cov=43/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/55
RA	3539	.	1	950295	0	T	G	consensus_score=296.7	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	3540	.	1	950492	0	C	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	3541	.	1	951034	0	T	G	consensus_score=144.5	frequency=1	major_base=G	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	3542	.	1	953081	0	C	T	consensus_score=201.8	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	3543	.	1	953254	0	G	A	consensus_score=142.1	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	3544	.	1	955347	0	G	T	bias_e_value=1747920	bias_p_value=0.828033	consensus_score=283.3	fisher_strand_p_value=0.474227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/45	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/46
RA	3545	.	1	959890	0	A	G	consensus_score=368.6	frequency=1	major_base=G	major_cov=65/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/64
RA	3546	.	1	962079	0	T	C	consensus_score=258.3	frequency=1	major_base=C	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	3547	.	1	962369	0	G	A	consensus_score=249.6	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	3548	.	1	964942	0	A	G	consensus_score=315.1	frequency=1	major_base=G	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	3549	.	1	968254	0	T	.	consensus_score=348.8	frequency=1	major_base=.	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	3550	.	1	968666	0	C	A	consensus_score=233.5	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	3551	.	1	969191	0	G	A	consensus_score=336.3	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	3552	.	1	970682	0	T	C	consensus_score=271.3	frequency=1	major_base=C	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	3553	.	1	971556	0	C	.	consensus_score=425.9	frequency=1	major_base=.	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	3554	.	1	972453	0	G	T	consensus_score=284.3	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	3555	.	1	973054	0	T	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=59/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/25
RA	3556	.	1	976602	0	G	C	consensus_score=353.5	frequency=1	major_base=C	major_cov=53/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/68
RA	3557	.	1	979163	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=324.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/51	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	3558	.	1	980693	0	T	G	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=235.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998796	major_base=G	major_cov=39/42	major_frequency=9.878e-01	minor_base=A	minor_cov=0/1	new_cov=39/42	polymorphism_frequency=9.878e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	3559	.	1	981154	0	T	C	consensus_score=366.7	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	3560	.	1	982263	0	A	G	consensus_score=334.7	frequency=1	major_base=G	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	3561	.	1	983217	0	A	G	consensus_score=319.9	frequency=1	major_base=G	major_cov=40/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/71
RA	3562	.	1	983887	0	A	G	consensus_score=241.9	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3563	.	1	984002	0	T	C	consensus_score=228.6	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	3564	.	1	984428	0	C	T	bias_e_value=4.00864e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	3565	.	1	988496	0	C	G	consensus_score=352.1	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	3566	.	1	991296	0	G	A	consensus_score=217.3	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	3567	.	1	991456	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=217.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999609	major_base=C	major_cov=43/28	major_frequency=9.861e-01	minor_base=A	minor_cov=1/0	new_cov=43/28	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/28
RA	3568	.	1	993136	0	C	T	bias_e_value=1740250	bias_p_value=0.824398	consensus_score=295.2	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	3569	.	1	993657	0	A	G	consensus_score=188.4	frequency=1	major_base=G	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3570	.	1	994903	0	G	A	consensus_score=304.7	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	3571	.	1	997965	0	G	A	consensus_score=251.0	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	3572	.	1	999684	0	C	T	consensus_score=226.3	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	3573	.	1	1007748	0	T	C	consensus_score=232.9	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	3574	.	1	1009345	0	G	A	consensus_score=290.9	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	3575	.	1	1009493	0	C	T	consensus_score=251.1	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	3576	.	1	1012286	0	A	C	consensus_score=289.7	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	3577	.	1	1016142	0	T	C	consensus_score=229.0	frequency=1	major_base=C	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	3578	.	1	1016479	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	3579	.	1	1019215	0	A	C	consensus_score=283.9	frequency=1	major_base=C	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	3580	.	1	1020190	0	T	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	3581	.	1	1020477	0	G	T	consensus_score=169.8	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	3582	.	1	1021624	0	C	T	consensus_score=202.0	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	3583	.	1	1021996	0	A	C	consensus_score=135.2	frequency=1	major_base=C	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	3584	.	1	1022127	0	G	A	consensus_score=196.8	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	3585	.	1	1022219	0	T	C	consensus_score=208.8	frequency=1	major_base=C	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	3586	.	1	1024986	0	C	T	consensus_score=187.6	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3587	.	1	1024987	0	C	T	consensus_score=190.6	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3588	.	1	1026167	0	A	G	consensus_score=163.9	frequency=1	major_base=G	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	3589	.	1	1026237	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3590	.	1	1026300	0	C	T	consensus_score=171.6	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3591	.	1	1026444	0	C	T	consensus_score=161.9	frequency=1	major_base=T	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	3592	.	1	1027540	0	A	G	bias_e_value=360024	bias_p_value=0.170552	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.5	deleted=1	fisher_strand_p_value=0.0405594	frequency=5.333e-01	ks_quality_p_value=1	major_base=G	major_cov=1/7	major_frequency=5.333e-01	minor_base=A	minor_cov=5/2	new_cov=1/7	polymorphism_frequency=5.333e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=5/2	total_cov=6/9
RA	3593	.	1	1027549	0	G	A	bias_e_value=97579.3	bias_p_value=0.0462256	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	deleted=1	fisher_strand_p_value=0.0152201	frequency=4.706e-01	ks_quality_p_value=0.520173	major_base=G	major_cov=7/2	major_frequency=5.294e-01	minor_base=A	minor_cov=1/7	new_cov=1/7	polymorphism_frequency=4.706e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=7/2	total_cov=8/9
RA	3594	.	1	1027558	0	C	T	bias_e_value=100278	bias_p_value=0.0475042	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.917062	major_base=C	major_cov=9/2	major_frequency=5.238e-01	minor_base=T	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	3595	.	1	1027564	0	T	C	bias_e_value=2696.59	bias_p_value=0.00127744	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.7	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.0143727	major_base=T	major_cov=9/2	major_frequency=5.238e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	3596	.	1	1027570	0	T	C	bias_e_value=38492.1	bias_p_value=0.0182346	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.5	fisher_strand_p_value=0.00343249	frequency=4.348e-01	ks_quality_p_value=0.765246	major_base=T	major_cov=11/2	major_frequency=5.652e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.348e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=11/2	total_cov=13/10
RA	3597	.	1	1027579	0	C	A	bias_e_value=13960.5	bias_p_value=0.00661342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.00274073	frequency=3.793e-01	ks_quality_p_value=0.297462	major_base=C	major_cov=14/4	major_frequency=6.207e-01	minor_base=A	minor_cov=2/9	new_cov=2/9	polymorphism_frequency=3.793e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=14/4	total_cov=16/13
RA	3598	.	1	1027594	0	A	G	bias_e_value=178831	bias_p_value=0.0847164	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.9	fisher_strand_p_value=0.0166204	frequency=4.167e-01	ks_quality_p_value=1	major_base=A	major_cov=15/6	major_frequency=5.833e-01	minor_base=G	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=4.167e-01	polymorphism_score=31.6	prediction=polymorphism	ref_cov=15/6	total_cov=19/17
RA	3599	.	1	1027600	0	G	A	bias_e_value=86440	bias_p_value=0.0409487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.2	fisher_strand_p_value=0.00727285	frequency=3.947e-01	ks_quality_p_value=0.940802	major_base=G	major_cov=17/6	major_frequency=6.053e-01	minor_base=A	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=3.947e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=17/6	total_cov=21/17
RA	3600	.	1	1027609	0	A	G	bias_e_value=316955	bias_p_value=0.150149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.5	fisher_strand_p_value=0.0355345	frequency=4.130e-01	ks_quality_p_value=0.966667	major_base=A	major_cov=19/8	major_frequency=5.870e-01	minor_base=G	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=4.130e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=19/8	total_cov=26/20
RA	3601	.	1	1027618	0	G	C	bias_e_value=52133.7	bias_p_value=0.024697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.0234418	frequency=4.151e-01	ks_quality_p_value=0.159967	major_base=G	major_cov=22/9	major_frequency=5.849e-01	minor_base=C	minor_cov=8/14	new_cov=8/14	polymorphism_frequency=4.151e-01	polymorphism_score=72.8	prediction=polymorphism	ref_cov=22/9	total_cov=30/23
RA	3602	.	1	1027624	0	A	T	bias_e_value=706128	bias_p_value=0.33451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.2	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.97357	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=76.4	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	3603	.	1	1027627	0	A	T	bias_e_value=667548	bias_p_value=0.316234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.5	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.898397	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	3604	.	1	1027633	0	A	C	bias_e_value=798000	bias_p_value=0.378032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.2	fisher_strand_p_value=0.12498	frequency=4.516e-01	ks_quality_p_value=0.973784	major_base=A	major_cov=21/13	major_frequency=5.484e-01	minor_base=C	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=21/13	total_cov=32/30
RA	3605	.	1	1027636	0	G	A	bias_e_value=1107210	bias_p_value=0.524511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.4	fisher_strand_p_value=0.201634	frequency=4.516e-01	ks_quality_p_value=1	major_base=G	major_cov=20/14	major_frequency=5.484e-01	minor_base=A	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=57.1	prediction=polymorphism	ref_cov=20/14	total_cov=31/31
RA	3606	.	1	1027642	0	G	A	bias_e_value=1155340	bias_p_value=0.547312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.216194	frequency=4.462e-01	ks_quality_p_value=1	major_base=G	major_cov=21/15	major_frequency=5.538e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=4.462e-01	polymorphism_score=60.4	prediction=polymorphism	ref_cov=21/15	total_cov=33/32
RA	3607	.	1	1027646	0	G	T	bias_e_value=1155320	bias_p_value=0.547302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.2	fisher_strand_p_value=0.216194	frequency=5.538e-01	ks_quality_p_value=0.999971	major_base=T	major_cov=21/15	major_frequency=5.538e-01	minor_base=G	minor_cov=12/17	new_cov=21/15	polymorphism_frequency=5.538e-01	polymorphism_score=88.5	prediction=polymorphism	ref_cov=12/17	total_cov=33/32
RA	3608	.	1	1027666	0	G	A	bias_e_value=421.667	bias_p_value=0.000199754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=9.05969e-05	major_base=G	major_cov=24/20	major_frequency=5.500e-01	minor_base=A	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=79.0	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	3609	.	1	1027669	0	T	C	bias_e_value=1007900	bias_p_value=0.477465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.9	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=0.944766	major_base=T	major_cov=24/20	major_frequency=5.500e-01	minor_base=C	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	3610	.	1	1027674	0	T	C	bias_e_value=1080900	bias_p_value=0.51205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.9	fisher_strand_p_value=0.197777	frequency=4.598e-01	ks_quality_p_value=0.980625	major_base=T	major_cov=26/21	major_frequency=5.402e-01	minor_base=C	minor_cov=16/24	new_cov=16/24	polymorphism_frequency=4.598e-01	polymorphism_score=94.3	prediction=polymorphism	ref_cov=26/21	total_cov=42/45
RA	3611	.	1	1027691	0	G	T	bias_e_value=512960	bias_p_value=0.243002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=0.105286	frequency=4.845e-01	ks_quality_p_value=0.618523	major_base=G	major_cov=29/21	major_frequency=5.155e-01	minor_base=T	minor_cov=19/28	new_cov=19/28	polymorphism_frequency=4.845e-01	polymorphism_score=135.1	prediction=polymorphism	ref_cov=29/21	total_cov=48/49
RA	3612	.	1	1027704	0	T	C	bias_e_value=974546	bias_p_value=0.461666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.2	fisher_strand_p_value=0.164649	frequency=4.950e-01	ks_quality_p_value=1	major_base=T	major_cov=28/23	major_frequency=5.050e-01	minor_base=C	minor_cov=20/30	new_cov=20/30	polymorphism_frequency=4.950e-01	polymorphism_score=114.3	prediction=polymorphism	ref_cov=28/23	total_cov=48/53
RA	3613	.	1	1027707	0	A	T	bias_e_value=116638	bias_p_value=0.055254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.229152	frequency=5.051e-01	ks_quality_p_value=0.0428847	major_base=T	major_cov=20/30	major_frequency=5.051e-01	minor_base=A	minor_cov=26/23	new_cov=20/30	polymorphism_frequency=5.051e-01	polymorphism_score=169.9	prediction=polymorphism	ref_cov=26/23	total_cov=46/53
RA	3614	.	1	1027720	0	A	G	bias_e_value=780404	bias_p_value=0.369696	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.1	fisher_strand_p_value=0.243432	frequency=5.143e-01	ks_quality_p_value=0.483816	major_base=G	major_cov=22/32	major_frequency=5.143e-01	minor_base=A	minor_cov=27/24	new_cov=22/32	polymorphism_frequency=5.143e-01	polymorphism_score=112.0	prediction=polymorphism	ref_cov=27/24	total_cov=49/56
RA	3615	.	1	1027755	0	T	C	bias_e_value=906664	bias_p_value=0.429508	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.9	fisher_strand_p_value=0.344458	frequency=5.045e-01	ks_quality_p_value=0.42776	major_base=C	major_cov=26/30	major_frequency=5.045e-01	minor_base=T	minor_cov=31/24	new_cov=26/30	polymorphism_frequency=5.045e-01	polymorphism_score=127.2	prediction=polymorphism	ref_cov=31/24	total_cov=57/54
RA	3616	.	1	1027760	0	C	T	bias_e_value=1983530	bias_p_value=0.939644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.968539	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=105.6	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3617	.	1	1027763	0	C	T	bias_e_value=231588	bias_p_value=0.109709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.842573	frequency=4.706e-01	ks_quality_p_value=0.0272806	major_base=C	major_cov=30/24	major_frequency=5.294e-01	minor_base=T	minor_cov=25/23	new_cov=25/23	polymorphism_frequency=4.706e-01	polymorphism_score=107.6	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3618	.	1	1027764	0	C	T	bias_e_value=100312	bias_p_value=0.04752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.9	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0117743	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=109.3	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3619	.	1	1027768	1	.	T	bias_e_value=1.80144e-06	bias_p_value=8.53387e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=3.80475e-14	major_base=.	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=217.3	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3620	.	1	1027769	0	C	A	bias_e_value=3.85632e-05	bias_p_value=1.82683e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=9.03129e-13	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=141.3	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3621	.	1	1027770	0	G	T	bias_e_value=42.692	bias_p_value=2.02242e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=2.00886e-06	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=138.5	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3622	.	1	1027773	0	G	A	bias_e_value=87740.9	bias_p_value=0.041565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.9	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0100204	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3623	.	1	1027783	1	.	T	bias_e_value=1693950	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=T	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=241.1	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	3624	.	1	1027783	2	.	C	bias_e_value=1693950	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.9	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=C	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=277.1	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	3625	.	1	1027872	0	T	.	bias_e_value=28935	bias_p_value=0.0137072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.2	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.00679705	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=T	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=146.5	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	3626	.	1	1027873	0	C	.	bias_e_value=607110	bias_p_value=0.287603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.3	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.296527	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=C	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=162.8	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	3627	.	1	1028231	0	A	C	consensus_score=137.6	frequency=1	major_base=C	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3628	.	1	1033910	0	C	A	consensus_score=274.3	frequency=1	major_base=A	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	3629	.	1	1036444	0	G	A	consensus_score=288.5	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	3630	.	1	1036822	0	A	G	consensus_score=127.7	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	3631	.	1	1037414	0	G	T	consensus_score=229.5	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	3632	.	1	1037700	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3633	.	1	1040499	0	A	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	3634	.	1	1041846	0	T	C	consensus_score=219.7	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	3635	.	1	1045502	0	T	G	bias_e_value=2110930	bias_p_value=1	consensus_score=210.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/34	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=38/34	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/34
RA	3636	.	1	1047028	0	A	C	bias_e_value=2.1706e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.9	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	3637	.	1	1048725	0	G	T	consensus_score=287.0	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	3638	.	1	1052721	0	T	C	consensus_score=298.5	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	3639	.	1	1053394	0	G	A	consensus_score=212.7	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3640	.	1	1053395	0	G	A	consensus_score=211.7	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3641	.	1	1062657	0	T	G	consensus_score=286.5	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	3642	.	1	1066211	0	C	G	consensus_score=185.6	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	3643	.	1	1069119	0	A	G	consensus_score=280.8	frequency=1	major_base=G	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	3644	.	1	1069941	0	T	A	consensus_score=143.7	frequency=1	major_base=A	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	3645	.	1	1070907	0	A	G	consensus_score=194.6	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3646	.	1	1071698	0	G	A	consensus_score=265.8	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	3647	.	1	1071804	0	G	A	consensus_score=204.1	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	3648	.	1	1072100	0	C	T	consensus_score=212.2	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3649	.	1	1075673	0	T	C	consensus_score=33.0	frequency=1	major_base=C	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	3650	.	1	1076588	0	G	A	consensus_score=56.2	frequency=1	major_base=A	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	3651	.	1	1076955	0	A	G	consensus_score=119.2	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	3652	.	1	1077128	0	T	C	consensus_score=27.4	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	3653	.	1	1077449	0	G	T	consensus_score=28.6	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	3654	.	1	1078849	0	C	T	consensus_score=92.2	frequency=1	major_base=T	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	3655	.	1	1080981	0	G	A	consensus_score=34.3	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	3656	.	1	1082541	0	T	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	3657	.	1	1086923	0	T	C	consensus_score=169.1	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	3658	.	1	1087379	0	G	A	bias_e_value=944.072	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	3659	.	1	1090832	0	T	C	consensus_score=179.0	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	3660	.	1	1091342	0	T	G	consensus_score=232.1	frequency=1	major_base=G	major_cov=27/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/50
RA	3661	.	1	1091442	0	A	G	consensus_score=116.3	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	3662	.	1	1093567	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=203.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=31/41	major_frequency=9.863e-01	minor_base=T	minor_cov=0/1	new_cov=31/41	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	3663	.	1	1095213	0	T	.	consensus_score=299.4	frequency=1	major_base=.	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	3664	.	1	1096614	0	T	G	consensus_score=205.6	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	3665	.	1	1102037	0	G	A	bias_e_value=1558580	bias_p_value=0.738338	consensus_score=246.0	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.995632	major_base=A	major_cov=54/31	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=54/31	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/32
RA	3666	.	1	1103183	0	T	C	consensus_score=255.7	frequency=1	major_base=C	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	3667	.	1	1106553	0	C	T	bias_e_value=841792	bias_p_value=0.398777	consensus_score=178.2	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	3668	.	1	1106842	0	G	A	consensus_score=218.1	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	3669	.	1	1110294	0	C	T	consensus_score=146.9	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	3670	.	1	1110606	0	C	T	consensus_score=41.5	frequency=1	major_base=T	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	3671	.	1	1110727	0	C	T	consensus_score=49.7	frequency=1	major_base=T	major_cov=13/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/6
RA	3672	.	1	1111111	0	C	T	consensus_score=254.3	frequency=1	major_base=T	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	3673	.	1	1112553	0	C	T	consensus_score=253.3	frequency=1	major_base=T	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	3674	.	1	1112734	0	C	T	consensus_score=330.2	frequency=1	major_base=T	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	3675	.	1	1113544	0	T	C	consensus_score=177.7	frequency=1	major_base=C	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3676	.	1	1114297	0	T	C	consensus_score=314.3	frequency=1	major_base=C	major_cov=52/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	3677	.	1	1115370	0	A	G	consensus_score=174.7	frequency=1	major_base=G	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	3678	.	1	1116692	0	T	C	consensus_score=241.6	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3679	.	1	1116766	0	T	G	consensus_score=231.6	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	3680	.	1	1116772	0	G	A	consensus_score=247.4	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	3681	.	1	1119899	0	C	T	consensus_score=231.8	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	3682	.	1	1121897	0	A	G	consensus_score=305.1	frequency=1	major_base=G	major_cov=61/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/45
RA	3683	.	1	1124233	0	G	A	consensus_score=244.3	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	3684	.	1	1124341	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=308.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=58/43	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=58/43	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	3685	.	1	1124600	0	C	T	consensus_score=262.3	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	3686	.	1	1127540	0	G	A	consensus_score=248.0	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	3687	.	1	1127652	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=255.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=51/38	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=51/38	polymorphism_frequency=9.889e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=52/38
RA	3688	.	1	1127965	0	A	T	consensus_score=314.3	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	3689	.	1	1128621	0	C	A	consensus_score=230.3	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	3690	.	1	1128944	0	G	T	consensus_score=270.3	frequency=1	major_base=T	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	3691	.	1	1129483	0	A	.	consensus_score=392.9	frequency=1	major_base=.	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	3692	.	1	1131197	0	A	G	consensus_score=209.8	frequency=1	major_base=G	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	3693	.	1	1132339	0	G	A	bias_e_value=0.00217465	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.2	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	3694	.	1	1132739	0	T	C	consensus_score=248.6	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	3695	.	1	1138296	0	T	C	consensus_score=171.1	frequency=1	major_base=C	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	3696	.	1	1139511	0	A	C	consensus_score=206.4	frequency=1	major_base=C	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	3697	.	1	1141875	0	T	G	bias_e_value=1701550	bias_p_value=0.806063	consensus_score=235.0	fisher_strand_p_value=0.447059	frequency=1	ks_quality_p_value=0.997482	major_base=G	major_cov=37/47	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	3698	.	1	1145074	0	T	G	consensus_score=358.9	frequency=1	major_base=G	major_cov=70/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/46
RA	3699	.	1	1150205	0	A	G	consensus_score=191.8	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	3700	.	1	1151965	0	G	A	consensus_score=222.6	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	3701	.	1	1152845	0	C	T	consensus_score=255.1	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	3702	.	1	1154058	0	T	C	consensus_score=210.9	frequency=1	major_base=C	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	3703	.	1	1155264	0	G	A	consensus_score=272.5	frequency=1	major_base=A	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	3704	.	1	1155459	0	A	G	consensus_score=288.9	frequency=1	major_base=G	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	3705	.	1	1157434	0	C	A	consensus_score=335.8	frequency=1	major_base=A	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	3706	.	1	1159560	0	T	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	3707	.	1	1159599	0	G	A	consensus_score=171.6	frequency=1	major_base=A	major_cov=40/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/22
RA	3708	.	1	1159627	0	A	G	consensus_score=181.1	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3709	.	1	1160048	0	C	A	bias_e_value=2110930	bias_p_value=1	consensus_score=236.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/48	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=36/48	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	3710	.	1	1161369	0	T	C	bias_e_value=1784850	bias_p_value=0.845528	consensus_score=231.9	fisher_strand_p_value=0.498495	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/45	major_frequency=9.767e-01	minor_base=A	minor_cov=0/2	new_cov=39/45	polymorphism_frequency=9.767e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	3711	.	1	1162075	0	C	T	consensus_score=240.3	frequency=1	major_base=T	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	3712	.	1	1162472	0	A	G	bias_e_value=251363	bias_p_value=0.119077	consensus_score=122.8	fisher_strand_p_value=0.0255042	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/25	major_frequency=8.966e-01	minor_base=A	minor_cov=0/6	new_cov=27/25	polymorphism_frequency=8.966e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/6	total_cov=27/31
RA	3713	.	1	1162888	0	C	T	consensus_score=295.9	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	3714	.	1	1163862	0	T	C	consensus_score=249.1	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	3715	.	1	1164208	0	T	G	consensus_score=279.3	frequency=1	major_base=G	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	3716	.	1	1164985	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3717	.	1	1165328	0	A	G	consensus_score=183.1	frequency=1	major_base=G	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	3718	.	1	1166957	0	C	T	bias_e_value=1734040	bias_p_value=0.821455	consensus_score=161.6	fisher_strand_p_value=0.465517	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/26	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=31/26	polymorphism_frequency=9.828e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=31/27
RA	3719	.	1	1172860	0	T	G	consensus_score=215.0	frequency=1	major_base=G	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3720	.	1	1173889	0	A	C	consensus_score=318.8	frequency=1	major_base=C	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	3721	.	1	1176893	0	T	G	consensus_score=236.4	frequency=1	major_base=G	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	3722	.	1	1179088	0	G	A	consensus_score=198.7	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	3723	.	1	1179850	1	.	A	bias_e_value=1454100	bias_p_value=0.688842	consensus_score=179.6	fisher_strand_p_value=0.34375	frequency=1	ks_quality_p_value=0.941746	major_base=A	major_cov=42/21	major_frequency=9.844e-01	minor_base=.	minor_cov=0/1	new_cov=42/21	polymorphism_frequency=9.844e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=42/22
RA	3724	.	1	1180037	0	A	G	consensus_score=277.5	frequency=1	major_base=G	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	3725	.	1	1180542	0	G	A	consensus_score=288.5	frequency=1	major_base=A	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	3726	.	1	1180754	0	A	G	consensus_score=204.8	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	3727	.	1	1181277	0	G	A	consensus_score=260.6	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	3728	.	1	1183794	0	G	T	consensus_score=306.1	frequency=1	major_base=T	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3729	.	1	1185647	0	A	G	consensus_score=256.9	frequency=1	major_base=G	major_cov=35/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/54
RA	3730	.	1	1187941	0	G	A	consensus_score=245.7	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	3731	.	1	1188403	0	C	T	consensus_score=243.2	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	3732	.	1	1188652	0	T	C	consensus_score=251.3	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	3733	.	1	1189976	0	T	C	bias_e_value=1701290	bias_p_value=0.805941	consensus_score=219.8	fisher_strand_p_value=0.445783	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/46	major_frequency=9.880e-01	minor_base=G	minor_cov=1/0	new_cov=36/46	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	3734	.	1	1190198	0	C	T	consensus_score=239.4	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	3735	.	1	1193109	0	C	T	consensus_score=327.1	frequency=1	major_base=T	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	3736	.	1	1194405	0	T	C	consensus_score=302.2	frequency=1	major_base=C	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	3737	.	1	1194630	0	A	G	consensus_score=45.1	deleted=1	frequency=1	major_base=G	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	3738	.	1	1194999	0	G	T	consensus_score=144.7	frequency=1	major_base=T	major_cov=17/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/35
RA	3739	.	1	1195028	0	G	C	consensus_score=108.0	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3740	.	1	1195031	0	A	G	consensus_score=111.2	frequency=1	major_base=G	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3741	.	1	1195037	0	G	A	consensus_score=110.4	frequency=1	major_base=A	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3742	.	1	1195052	0	T	C	consensus_score=97.3	frequency=1	major_base=C	major_cov=10/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/24
RA	3743	.	1	1195073	0	A	G	consensus_score=37.0	deleted=1	frequency=1	major_base=G	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3744	.	1	1195076	0	T	C	consensus_score=39.0	deleted=1	frequency=1	major_base=C	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3745	.	1	1195079	0	C	T	consensus_score=33.6	deleted=1	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3746	.	1	1195082	0	T	C	consensus_score=39.1	deleted=1	frequency=1	major_base=C	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3747	.	1	1195085	0	G	A	consensus_score=36.2	deleted=1	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3748	.	1	1195088	0	A	G	consensus_score=36.7	deleted=1	frequency=1	major_base=G	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3749	.	1	1195091	0	C	T	consensus_score=36.5	deleted=1	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3750	.	1	1197266	0	G	A	consensus_score=309.3	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3751	.	1	1203195	0	T	C	consensus_score=282.4	frequency=1	major_base=C	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	3752	.	1	1204172	0	A	G	consensus_score=246.7	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	3753	.	1	1207527	0	A	C	consensus_score=183.8	frequency=1	major_base=C	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	3754	.	1	1213095	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=290.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/47	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=57/47	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/47
RA	3755	.	1	1213725	0	C	T	bias_e_value=0.00166771	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.8	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	3756	.	1	1213750	0	C	T	bias_e_value=6.64012e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.8	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	3757	.	1	1213782	0	G	T	bias_e_value=1.17234	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.8	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	3758	.	1	1215276	0	C	T	consensus_score=161.0	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3759	.	1	1216357	0	T	C	consensus_score=308.5	frequency=1	major_base=C	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	3760	.	1	1217214	0	T	C	consensus_score=109.6	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	3761	.	1	1217252	0	C	A	consensus_score=104.7	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	3762	.	1	1218042	0	T	C	consensus_score=275.9	frequency=1	major_base=C	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	3763	.	1	1218808	0	C	T	consensus_score=62.4	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	3764	.	1	1218940	0	C	T	consensus_score=154.5	frequency=1	major_base=T	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	3765	.	1	1219121	0	A	T	consensus_score=235.4	frequency=1	major_base=T	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	3766	.	1	1220284	0	C	T	consensus_score=352.6	frequency=1	major_base=T	major_cov=47/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/75
RA	3767	.	1	1221766	0	T	C	bias_e_value=1632930	bias_p_value=0.773558	consensus_score=314.3	fisher_strand_p_value=0.407767	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/61	major_frequency=9.903e-01	minor_base=A	minor_cov=1/0	new_cov=41/61	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	3768	.	1	1222631	0	C	T	consensus_score=295.7	frequency=1	major_base=T	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	3769	.	1	1222718	0	A	G	consensus_score=293.5	frequency=1	major_base=G	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	3770	.	1	1224448	0	T	G	consensus_score=276.1	frequency=1	major_base=G	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	3771	.	1	1225255	0	A	G	consensus_score=269.8	frequency=1	major_base=G	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	3772	.	1	1225552	0	T	C	consensus_score=232.1	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	3773	.	1	1226189	0	G	A	consensus_score=139.3	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	3774	.	1	1227282	0	C	A	consensus_score=269.3	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	3775	.	1	1231865	0	C	T	bias_e_value=1632250	bias_p_value=0.773235	consensus_score=216.6	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/48	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=32/48	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/48
RA	3776	.	1	1233961	0	T	C	consensus_score=217.8	frequency=1	major_base=C	major_cov=55/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/21
RA	3777	.	1	1234824	0	C	T	consensus_score=230.7	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	3778	.	1	1236354	0	T	G	consensus_score=247.4	frequency=1	major_base=G	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3779	.	1	1237693	0	T	G	consensus_score=236.5	frequency=1	major_base=G	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	3780	.	1	1237883	0	C	.	consensus_score=292.2	frequency=1	major_base=.	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	3781	.	1	1238027	0	G	A	consensus_score=234.2	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	3782	.	1	1238195	0	T	C	consensus_score=278.2	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	3783	.	1	1238483	0	A	G	consensus_score=231.2	frequency=1	major_base=G	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	3784	.	1	1238508	0	T	C	bias_e_value=1719780	bias_p_value=0.814699	consensus_score=240.3	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/37
RA	3785	.	1	1240133	0	G	A	consensus_score=53.4	deleted=1	frequency=1	major_base=A	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	3786	.	1	1240143	0	G	A	consensus_score=30.1	deleted=1	frequency=1	major_base=A	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	3787	.	1	1243526	0	T	C	consensus_score=197.4	frequency=1	major_base=C	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	3788	.	1	1244216	0	T	C	consensus_score=288.5	frequency=1	major_base=C	major_cov=33/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/67
RA	3789	.	1	1245963	0	A	G	consensus_score=163.0	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3790	.	1	1247643	0	T	C	consensus_score=212.1	frequency=1	major_base=C	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	3791	.	1	1247645	0	G	C	bias_e_value=1765170	bias_p_value=0.836203	consensus_score=202.6	fisher_strand_p_value=0.486111	frequency=1	ks_quality_p_value=0.998436	major_base=C	major_cov=37/34	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=37/34	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	3792	.	1	1247994	0	A	G	consensus_score=221.7	frequency=1	major_base=G	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	3793	.	1	1248147	0	G	A	consensus_score=208.4	frequency=1	major_base=A	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	3794	.	1	1248361	0	C	T	consensus_score=288.3	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	3795	.	1	1249186	0	T	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	3796	.	1	1250747	0	T	C	consensus_score=262.1	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	3797	.	1	1251878	0	G	T	consensus_score=242.7	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	3798	.	1	1251950	0	C	T	consensus_score=278.8	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	3799	.	1	1252218	0	C	T	consensus_score=313.8	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	3800	.	1	1252472	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	3801	.	1	1252933	0	A	G	consensus_score=255.3	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	3802	.	1	1253486	0	C	T	consensus_score=241.6	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	3803	.	1	1255500	0	T	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	3804	.	1	1256788	0	T	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3805	.	1	1257041	0	C	T	consensus_score=246.4	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3806	.	1	1257548	0	G	A	bias_e_value=1756790	bias_p_value=0.832234	consensus_score=283.3	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	3807	.	1	1258069	0	A	C	bias_e_value=2110930	bias_p_value=1	consensus_score=265.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=C	major_cov=48/43	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=48/43	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/43
RA	3808	.	1	1260882	0	T	C	consensus_score=292.3	frequency=1	major_base=C	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	3809	.	1	1263792	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=283.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=54/44	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/44
RA	3810	.	1	1266483	0	C	T	consensus_score=230.6	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	3811	.	1	1267524	1	.	T	consensus_score=205.8	frequency=1	major_base=T	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	3812	.	1	1267524	2	.	G	consensus_score=214.4	frequency=1	major_base=G	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	3813	.	1	1268233	0	A	G	consensus_score=268.7	frequency=1	major_base=G	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3814	.	1	1268401	0	T	C	consensus_score=240.5	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	3815	.	1	1268468	0	A	G	consensus_score=274.6	frequency=1	major_base=G	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	3816	.	1	1268554	0	G	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	3817	.	1	1270277	0	G	A	consensus_score=208.8	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3818	.	1	1272994	0	T	C	consensus_score=245.1	frequency=1	major_base=C	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	3819	.	1	1276187	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=308.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/47	major_frequency=9.903e-01	minor_base=T	minor_cov=1/0	new_cov=55/47	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	3820	.	1	1278490	0	G	A	consensus_score=160.2	frequency=1	major_base=A	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3821	.	1	1279190	0	A	G	consensus_score=172.1	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3822	.	1	1279819	0	A	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	3823	.	1	1280297	0	G	T	consensus_score=225.3	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	3824	.	1	1280507	0	A	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	3825	.	1	1283736	0	T	C	consensus_score=164.0	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	3826	.	1	1284678	0	A	G	consensus_score=154.7	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3827	.	1	1285265	0	T	C	consensus_score=61.2	frequency=1	major_base=C	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	3828	.	1	1285283	0	A	C	consensus_score=57.4	frequency=1	major_base=C	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	3829	.	1	1285295	0	A	T	consensus_score=59.4	frequency=1	major_base=T	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	3830	.	1	1285312	0	C	A	consensus_score=91.7	frequency=1	major_base=A	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	3831	.	1	1285332	0	A	T	consensus_score=90.0	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3832	.	1	1285333	0	C	T	consensus_score=93.5	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3833	.	1	1285334	0	C	T	consensus_score=90.7	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3834	.	1	1285335	0	A	G	consensus_score=99.3	frequency=1	major_base=G	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3835	.	1	1285403	0	G	C	consensus_score=101.2	frequency=1	major_base=C	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	3836	.	1	1285409	0	A	G	consensus_score=129.5	frequency=1	major_base=G	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	3837	.	1	1285443	0	T	C	consensus_score=160.8	frequency=1	major_base=C	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3838	.	1	1285445	0	A	C	consensus_score=157.7	frequency=1	major_base=C	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	3839	.	1	1285889	0	T	C	consensus_score=37.3	deleted=1	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	3840	.	1	1286303	0	G	A	consensus_score=25.1	deleted=1	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	3841	.	1	1286328	0	A	T	consensus_score=28.0	deleted=1	frequency=1	major_base=T	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	3842	.	1	1286348	0	G	C	consensus_score=29.7	deleted=1	frequency=1	major_base=C	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	3843	.	1	1286351	0	C	T	consensus_score=30.5	deleted=1	frequency=1	major_base=T	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	3844	.	1	1286368	0	C	T	consensus_score=35.3	deleted=1	frequency=1	major_base=T	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	3845	.	1	1289636	0	C	T	consensus_score=66.8	frequency=1	major_base=T	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	3846	.	1	1290262	0	C	T	consensus_score=142.6	frequency=1	major_base=T	major_cov=31/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/17
RA	3847	.	1	1292537	0	G	A	consensus_score=12.1	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3848	.	1	1292546	0	T	G	consensus_score=11.8	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3849	.	1	1292549	0	T	A	consensus_score=11.7	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3850	.	1	1292552	0	T	C	consensus_score=11.7	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3851	.	1	1292555	0	C	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3852	.	1	1292557	0	A	C	consensus_score=11.5	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3853	.	1	1292561	0	T	A	consensus_score=12.4	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3854	.	1	1292564	0	T	G	consensus_score=11.9	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3855	.	1	1292567	0	G	T	consensus_score=11.3	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3856	.	1	1292582	0	A	G	consensus_score=78.6	frequency=1	major_base=G	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	3857	.	1	1292591	0	G	A	consensus_score=88.0	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	3858	.	1	1292594	0	T	G	consensus_score=83.2	frequency=1	major_base=G	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	3859	.	1	1292645	0	T	G	consensus_score=129.4	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	3860	.	1	1292663	0	T	C	consensus_score=154.1	frequency=1	major_base=C	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	3861	.	1	1292722	0	T	C	consensus_score=216.8	frequency=1	major_base=C	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	3862	.	1	1292765	0	A	G	consensus_score=189.3	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3863	.	1	1292766	0	A	T	consensus_score=176.9	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3864	.	1	1292767	0	T	A	consensus_score=177.3	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3865	.	1	1292773	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3866	.	1	1292775	0	A	C	consensus_score=183.7	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3867	.	1	1292776	0	T	C	consensus_score=184.8	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3868	.	1	1292785	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=225.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/38	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=40/38	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	3869	.	1	1292802	0	C	A	consensus_score=217.4	frequency=1	major_base=A	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3870	.	1	1292813	0	G	A	consensus_score=220.4	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3871	.	1	1292814	0	G	A	consensus_score=221.2	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3872	.	1	1292826	0	T	C	consensus_score=215.1	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3873	.	1	1292828	0	A	T	consensus_score=212.6	frequency=1	major_base=T	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3874	.	1	1292829	0	T	C	consensus_score=225.1	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3875	.	1	1292835	0	G	A	consensus_score=216.3	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	3876	.	1	1292849	0	A	G	consensus_score=216.8	frequency=1	major_base=G	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	3877	.	1	1292851	0	G	A	consensus_score=226.5	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	3878	.	1	1293890	0	G	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	3879	.	1	1293915	0	G	A	bias_e_value=1646840	bias_p_value=0.780145	consensus_score=189.7	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.999519	major_base=A	major_cov=38/26	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	3880	.	1	1295237	0	A	G	consensus_score=195.6	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3881	.	1	1295512	0	T	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	3882	.	1	1295951	0	T	C	consensus_score=184.6	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	3883	.	1	1299379	0	G	A	consensus_score=177.2	frequency=1	major_base=A	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	3884	.	1	1300014	0	A	G	consensus_score=238.4	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	3885	.	1	1302646	0	C	A	bias_e_value=2106100	bias_p_value=0.997709	consensus_score=53.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	3886	.	1	1302979	0	A	C	consensus_score=60.0	frequency=1	major_base=C	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	3887	.	1	1303039	0	G	A	consensus_score=47.5	frequency=1	major_base=A	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	3888	.	1	1303238	0	T	G	consensus_score=99.7	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	3889	.	1	1307970	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	3890	.	1	1309074	0	G	A	bias_e_value=1688380	bias_p_value=0.799825	consensus_score=265.5	fisher_strand_p_value=0.44086	frequency=1	ks_quality_p_value=0.994173	major_base=A	major_cov=52/40	major_frequency=9.892e-01	minor_base=.	minor_cov=0/1	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	3891	.	1	1310650	0	G	A	consensus_score=135.7	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	3892	.	1	1310995	0	G	A	consensus_score=146.6	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3893	.	1	1312289	0	T	G	bias_e_value=5.48197e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	3894	.	1	1313697	0	G	T	consensus_score=99.9	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	3895	.	1	1314710	0	A	G	consensus_score=223.2	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	3896	.	1	1316317	0	G	A	consensus_score=241.1	frequency=1	major_base=A	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	3897	.	1	1317357	0	C	T	consensus_score=90.0	frequency=1	major_base=T	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	3898	.	1	1317616	0	C	T	consensus_score=139.9	frequency=1	major_base=T	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	3899	.	1	1319579	0	C	G	consensus_score=229.7	frequency=1	major_base=G	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	3900	.	1	1321668	0	T	C	consensus_score=216.9	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	3901	.	1	1322022	0	T	C	bias_e_value=1677810	bias_p_value=0.794819	consensus_score=206.5	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.99963	major_base=C	major_cov=42/31	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/32
RA	3902	.	1	1322947	0	C	T	bias_e_value=0.00481623	bias_p_value=2.28157e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.3	fisher_strand_p_value=9.47503e-11	frequency=2.407e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.593e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.407e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=2/39	total_cov=16/39
RA	3903	.	1	1322957	0	T	G	bias_e_value=495732	bias_p_value=0.23484	consensus_score=138.8	fisher_strand_p_value=0.0635919	frequency=1	ks_quality_p_value=0.977466	major_base=G	major_cov=12/40	major_frequency=9.630e-01	minor_base=C	minor_cov=2/0	new_cov=12/40	polymorphism_frequency=9.630e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=14/40
RA	3904	.	1	1324714	0	T	G	consensus_score=240.9	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	3905	.	1	1325078	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=221.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	3906	.	1	1328869	0	A	G	consensus_score=232.7	frequency=1	major_base=G	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	3907	.	1	1329325	0	A	G	consensus_score=217.6	frequency=1	major_base=G	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	3908	.	1	1330393	0	G	A	consensus_score=193.6	frequency=1	major_base=A	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3909	.	1	1331635	0	G	A	bias_e_value=1303020	bias_p_value=0.617272	consensus_score=280.2	fisher_strand_p_value=0.351064	frequency=1	ks_quality_p_value=0.75559	major_base=A	major_cov=61/32	major_frequency=9.894e-01	minor_base=.	minor_cov=0/1	new_cov=61/32	polymorphism_frequency=9.894e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	3910	.	1	1331889	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=275.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=48/47	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/48
RA	3911	.	1	1332897	0	A	G	consensus_score=254.8	frequency=1	major_base=G	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	3912	.	1	1333818	0	T	G	consensus_score=177.6	frequency=1	major_base=G	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	3913	.	1	1335529	0	T	G	consensus_score=250.9	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	3914	.	1	1335532	0	G	A	consensus_score=253.0	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	3915	.	1	1336932	0	T	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	3916	.	1	1339144	0	C	T	bias_e_value=1674190	bias_p_value=0.793103	consensus_score=256.2	fisher_strand_p_value=0.430233	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/36	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=49/36	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/37
RA	3917	.	1	1340809	0	T	C	consensus_score=231.1	frequency=1	major_base=C	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	3918	.	1	1341473	0	T	C	consensus_score=196.5	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	3919	.	1	1343029	0	G	A	consensus_score=219.2	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	3920	.	1	1344180	0	C	T	bias_e_value=1.02234e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.8	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	3921	.	1	1345383	0	T	C	consensus_score=209.1	frequency=1	major_base=C	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3922	.	1	1346226	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	3923	.	1	1348600	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=253.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=A	major_cov=36/51	major_frequency=9.886e-01	minor_base=C	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	3924	.	1	1350476	0	T	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	3925	.	1	1354110	0	C	T	consensus_score=227.1	frequency=1	major_base=T	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	3926	.	1	1355733	0	C	T	consensus_score=266.4	frequency=1	major_base=T	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	3927	.	1	1356269	0	C	T	consensus_score=225.0	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	3928	.	1	1357179	0	A	G	consensus_score=205.8	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	3929	.	1	1358340	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	3930	.	1	1359588	0	C	A	consensus_score=222.8	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3931	.	1	1360362	0	G	A	consensus_score=254.8	frequency=1	major_base=A	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	3932	.	1	1362845	0	G	A	consensus_score=197.8	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	3933	.	1	1363183	1	.	C	bias_e_value=564596	bias_p_value=0.267463	consensus_score=101.1	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.8	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	3934	.	1	1363183	2	.	C	bias_e_value=1446090	bias_p_value=0.685049	consensus_score=95.4	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.8	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	3935	.	1	1363407	0	C	T	bias_e_value=1527500	bias_p_value=0.723616	consensus_score=165.7	fisher_strand_p_value=0.355932	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/38	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=20/38	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/38
RA	3936	.	1	1365856	0	G	T	bias_e_value=1477100	bias_p_value=0.699739	consensus_score=149.7	fisher_strand_p_value=0.339623	frequency=1	ks_quality_p_value=0.982021	major_base=T	major_cov=35/17	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=35/17	polymorphism_frequency=9.811e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=35/18
RA	3937	.	1	1366186	0	T	C	consensus_score=154.3	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	3938	.	1	1366770	0	A	G	bias_e_value=1774970	bias_p_value=0.840846	consensus_score=162.3	fisher_strand_p_value=0.491833	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/28	major_frequency=9.655e-01	minor_base=T	minor_cov=0/2	new_cov=28/28	polymorphism_frequency=9.655e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	3939	.	1	1370003	0	T	C	consensus_score=60.7	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	3940	.	1	1371086	0	C	T	consensus_score=88.7	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	3941	.	1	1374971	0	C	T	consensus_score=281.6	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	3942	.	1	1378912	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	3943	.	1	1379220	0	A	G	bias_e_value=2099440	bias_p_value=0.994555	consensus_score=197.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897472	major_base=G	major_cov=34/30	major_frequency=9.846e-01	minor_base=.	minor_cov=1/0	new_cov=34/30	polymorphism_frequency=9.846e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	3944	.	1	1380836	0	T	C	consensus_score=147.4	frequency=1	major_base=C	major_cov=21/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/31
RA	3945	.	1	1382579	0	C	T	consensus_score=138.5	frequency=1	major_base=T	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	3946	.	1	1382788	0	G	A	consensus_score=151.0	frequency=1	major_base=A	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	3947	.	1	1382894	1	.	G	consensus_score=193.8	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	3948	.	1	1384097	0	A	C	consensus_score=185.2	frequency=1	major_base=C	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	3949	.	1	1385245	0	C	A	bias_e_value=2110930	bias_p_value=1	consensus_score=155.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/28	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=27/28	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	3950	.	1	1387454	0	T	C	consensus_score=205.3	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	3951	.	1	1388585	1	.	C	bias_e_value=5171.6	bias_p_value=0.00244991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	deleted=1	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.78835	major_base=C	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3952	.	1	1388585	2	.	T	bias_e_value=6391.09	bias_p_value=0.00302761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=1	major_base=T	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3953	.	1	1388585	3	.	T	bias_e_value=6391.09	bias_p_value=0.00302761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=1	major_base=T	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3954	.	1	1388585	4	.	G	bias_e_value=6155.95	bias_p_value=0.00291622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.9	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.958716	major_base=G	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3955	.	1	1388585	5	.	C	bias_e_value=5171.6	bias_p_value=0.00244991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.78835	major_base=C	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3956	.	1	1389109	0	C	G	bias_e_value=1707080	bias_p_value=0.808684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.657834	major_base=C	major_cov=9/9	major_frequency=6.923e-01	minor_base=G	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	3957	.	1	1389112	0	T	A	bias_e_value=759599	bias_p_value=0.35984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.165794	major_base=T	major_cov=9/9	major_frequency=6.923e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	3958	.	1	1393156	1	.	A	consensus_score=56.9	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	3959	.	1	1393272	0	C	T	consensus_score=67.4	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	3960	.	1	1393650	0	A	C	consensus_score=88.0	frequency=1	major_base=C	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	3961	.	1	1393775	0	T	C	consensus_score=150.0	frequency=1	major_base=C	major_cov=34/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/17
RA	3962	.	1	1394465	0	T	C	consensus_score=201.5	frequency=1	major_base=C	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	3963	.	1	1394918	0	A	G	consensus_score=217.0	frequency=1	major_base=G	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	3964	.	1	1396543	0	A	G	consensus_score=152.5	frequency=1	major_base=G	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	3965	.	1	1396607	0	G	C	consensus_score=130.7	frequency=1	major_base=C	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	3966	.	1	1396783	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	3967	.	1	1396884	0	A	G	consensus_score=204.8	frequency=1	major_base=G	major_cov=26/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/45
RA	3968	.	1	1397171	0	C	A	consensus_score=226.3	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	3969	.	1	1402657	0	T	C	consensus_score=153.6	frequency=1	major_base=C	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	3970	.	1	1404121	0	G	A	consensus_score=220.4	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	3971	.	1	1408594	0	A	G	consensus_score=219.7	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3972	.	1	1408998	0	A	C	consensus_score=164.7	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	3973	.	1	1412466	0	G	A	consensus_score=111.6	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	3974	.	1	1413143	0	C	T	consensus_score=157.8	frequency=1	major_base=T	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3975	.	1	1413262	0	A	C	consensus_score=169.3	frequency=1	major_base=C	major_cov=47/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/19
RA	3976	.	1	1413677	0	C	A	bias_e_value=660764	bias_p_value=0.31302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.6	fisher_strand_p_value=0.0954867	frequency=2.237e-01	ks_quality_p_value=0.970125	major_base=C	major_cov=36/23	major_frequency=7.763e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.237e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=36/23	total_cov=42/34
RA	3977	.	1	1415015	0	A	G	consensus_score=182.5	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	3978	.	1	1415274	0	A	G	bias_e_value=1614130	bias_p_value=0.764652	consensus_score=166.2	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.994928	major_base=G	major_cov=23/36	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=23/36	polymorphism_frequency=9.833e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	3979	.	1	1418817	0	G	T	consensus_score=194.7	frequency=1	major_base=T	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	3980	.	1	1419242	0	A	G	consensus_score=202.7	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3981	.	1	1420077	0	G	T	bias_e_value=4016.24	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.3	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	3982	.	1	1420145	0	C	A	bias_e_value=0.169728	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	3983	.	1	1421431	0	T	C	consensus_score=235.2	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3984	.	1	1424390	0	T	C	consensus_score=193.2	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	3985	.	1	1425542	0	G	T	consensus_score=210.4	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	3986	.	1	1425592	0	G	T	consensus_score=207.7	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3987	.	1	1426004	0	T	C	consensus_score=187.3	frequency=1	major_base=C	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	3988	.	1	1426168	0	G	A	consensus_score=206.7	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	3989	.	1	1426717	0	C	A	consensus_score=176.3	frequency=1	major_base=A	major_cov=37/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/24
RA	3990	.	1	1427639	0	T	G	consensus_score=195.1	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3991	.	1	1428381	0	C	G	consensus_score=214.2	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3992	.	1	1430622	0	G	A	consensus_score=91.1	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	3993	.	1	1431934	0	C	T	consensus_score=152.2	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3994	.	1	1432371	0	G	A	consensus_score=161.7	frequency=1	major_base=A	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	3995	.	1	1432708	0	G	A	consensus_score=226.4	frequency=1	major_base=A	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	3996	.	1	1434312	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	3997	.	1	1436439	0	T	C	consensus_score=126.2	frequency=1	major_base=C	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	3998	.	1	1437549	0	A	G	consensus_score=153.8	frequency=1	major_base=G	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	3999	.	1	1440825	0	G	.	consensus_score=203.1	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4000	.	1	1440826	0	G	.	consensus_score=203.1	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4001	.	1	1443487	0	T	C	consensus_score=218.3	frequency=1	major_base=C	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	4002	.	1	1443836	0	G	A	consensus_score=191.6	frequency=1	major_base=A	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	4003	.	1	1445274	0	A	C	bias_e_value=1.89224e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=59.0	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	4004	.	1	1445295	0	G	A	bias_e_value=2692.54	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	4005	.	1	1446432	0	A	G	consensus_score=193.0	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4006	.	1	1446489	0	T	C	consensus_score=193.7	frequency=1	major_base=C	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4007	.	1	1447244	0	C	T	bias_e_value=1761200	bias_p_value=0.834322	consensus_score=76.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	4008	.	1	1448751	0	T	C	consensus_score=198.9	frequency=1	major_base=C	major_cov=23/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/47
RA	4009	.	1	1448903	0	T	A	bias_e_value=126240	bias_p_value=0.0598029	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.0700515	frequency=4.500e-01	ks_quality_p_value=0.154482	major_base=T	major_cov=31/13	major_frequency=5.500e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=4.500e-01	polymorphism_score=122.4	prediction=polymorphism	ref_cov=31/13	total_cov=49/31
RA	4010	.	1	1448905	0	G	A	bias_e_value=533011	bias_p_value=0.2525	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.0	fisher_strand_p_value=0.0700515	frequency=4.500e-01	ks_quality_p_value=0.979753	major_base=G	major_cov=31/13	major_frequency=5.500e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=4.500e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=31/13	total_cov=49/31
RA	4011	.	1	1448909	0	T	C	bias_e_value=314787	bias_p_value=0.149122	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.0403176	frequency=4.321e-01	ks_quality_p_value=0.84444	major_base=T	major_cov=33/13	major_frequency=5.679e-01	minor_base=C	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=4.321e-01	polymorphism_score=80.6	prediction=polymorphism	ref_cov=33/13	total_cov=50/31
RA	4012	.	1	1448932	0	A	G	bias_e_value=233062	bias_p_value=0.110407	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.9	fisher_strand_p_value=0.0231768	frequency=5.432e-01	ks_quality_p_value=0.999757	major_base=G	major_cov=31/13	major_frequency=5.432e-01	minor_base=A	minor_cov=16/21	new_cov=31/13	polymorphism_frequency=5.432e-01	polymorphism_score=79.3	prediction=polymorphism	ref_cov=16/21	total_cov=47/34
RA	4013	.	1	1448956	0	A	G	bias_e_value=24.266	bias_p_value=1.14954e-05	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.7	fisher_strand_p_value=0.0231768	frequency=5.432e-01	ks_quality_p_value=3.28742e-05	major_base=G	major_cov=31/13	major_frequency=5.432e-01	minor_base=A	minor_cov=16/21	new_cov=31/13	polymorphism_frequency=5.432e-01	polymorphism_score=80.9	prediction=polymorphism	ref_cov=16/21	total_cov=47/34
RA	4014	.	1	1448959	0	T	C	bias_e_value=227170	bias_p_value=0.107616	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.1	fisher_strand_p_value=0.0235712	frequency=5.500e-01	ks_quality_p_value=0.95171	major_base=C	major_cov=31/13	major_frequency=5.500e-01	minor_base=T	minor_cov=16/20	new_cov=31/13	polymorphism_frequency=5.500e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=16/20	total_cov=47/33
RA	4015	.	1	1450556	0	A	T	bias_e_value=1022950	bias_p_value=0.484595	consensus_score=113.9	fisher_strand_p_value=0.232558	frequency=1	ks_quality_p_value=0.763837	major_base=T	major_cov=19/22	major_frequency=9.318e-01	minor_base=A	minor_cov=3/0	new_cov=19/22	polymorphism_frequency=9.318e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=3/0	total_cov=22/22
RA	4016	.	1	1450560	0	T	C	bias_e_value=1089280	bias_p_value=0.516018	consensus_score=115.9	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.889882	major_base=C	major_cov=18/22	major_frequency=9.524e-01	minor_base=T	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4017	.	1	1450562	0	G	T	bias_e_value=1143090	bias_p_value=0.541507	consensus_score=112.2	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.962621	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=G	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4018	.	1	1450568	0	A	T	bias_e_value=458915	bias_p_value=0.217399	consensus_score=109.1	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.253744	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=A	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4019	.	1	1450574	0	C	T	bias_e_value=1430600	bias_p_value=0.677711	consensus_score=128.0	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.641057	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4020	.	1	1450580	0	C	T	bias_e_value=1665740	bias_p_value=0.789099	consensus_score=124.5	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.868762	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4021	.	1	1450583	0	G	A	bias_e_value=1511070	bias_p_value=0.715832	consensus_score=127.1	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.711468	major_base=A	major_cov=23/24	major_frequency=9.592e-01	minor_base=G	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4022	.	1	1450589	0	T	G	bias_e_value=1495940	bias_p_value=0.70866	consensus_score=141.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.341733	major_base=G	major_cov=25/25	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=25/25	polymorphism_frequency=9.804e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=26/25
RA	4023	.	1	1450595	0	C	T	consensus_score=141.6	frequency=1	major_base=T	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	4024	.	1	1450637	0	T	A	consensus_score=163.0	frequency=1	major_base=A	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	4025	.	1	1450657	0	G	A	consensus_score=174.3	frequency=1	major_base=A	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	4026	.	1	1450700	1	.	T	consensus_score=156.3	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4027	.	1	1450705	0	C	G	consensus_score=156.4	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4028	.	1	1450706	0	C	A	consensus_score=161.9	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4029	.	1	1450709	0	T	A	consensus_score=153.0	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4030	.	1	1450710	0	T	A	consensus_score=150.3	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4031	.	1	1450712	1	.	T	bias_e_value=1193120	bias_p_value=0.565209	consensus_score=154.1	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.501796	major_base=T	major_cov=24/30	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=25/30
RA	4032	.	1	1450713	0	G	C	bias_e_value=1219140	bias_p_value=0.577535	consensus_score=136.8	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.510912	major_base=C	major_cov=24/29	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4033	.	1	1450714	0	G	A	bias_e_value=1583530	bias_p_value=0.750158	consensus_score=153.4	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.84165	major_base=A	major_cov=24/30	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4034	.	1	1450721	0	C	T	consensus_score=156.2	frequency=1	major_base=T	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	4035	.	1	1450749	0	A	C	consensus_score=165.1	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	4036	.	1	1450788	0	C	T	consensus_score=133.3	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4037	.	1	1450789	0	G	A	bias_e_value=1774040	bias_p_value=0.840404	consensus_score=125.3	fisher_strand_p_value=0.491212	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/23	major_frequency=9.574e-01	minor_base=C	minor_cov=0/2	new_cov=22/23	polymorphism_frequency=9.574e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4038	.	1	1450791	0	T	C	bias_e_value=2110710	bias_p_value=0.999892	consensus_score=124.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985308	major_base=C	major_cov=22/24	major_frequency=9.787e-01	minor_base=A	minor_cov=0/1	new_cov=22/24	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4039	.	1	1450801	0	G	T	bias_e_value=2110930	bias_p_value=1	consensus_score=116.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/22	major_frequency=9.773e-01	minor_base=C	minor_cov=0/1	new_cov=21/22	polymorphism_frequency=9.773e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	4040	.	1	1450837	0	T	C	consensus_score=117.0	frequency=1	major_base=C	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	4041	.	1	1451613	0	C	T	consensus_score=70.1	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4042	.	1	1451673	0	T	C	consensus_score=72.8	frequency=1	major_base=C	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	4043	.	1	1451687	0	T	C	consensus_score=73.2	frequency=1	major_base=C	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	4044	.	1	1451693	0	T	G	consensus_score=72.5	frequency=1	major_base=G	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	4045	.	1	1451721	0	C	T	consensus_score=49.7	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	4046	.	1	1451727	0	A	T	consensus_score=49.5	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4047	.	1	1451728	0	T	C	consensus_score=47.8	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4048	.	1	1451734	0	T	C	consensus_score=44.0	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4049	.	1	1451738	0	C	T	consensus_score=46.9	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4050	.	1	1451742	0	T	A	consensus_score=46.3	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4051	.	1	1451745	0	T	G	consensus_score=48.3	frequency=1	major_base=G	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4052	.	1	1451746	0	T	A	consensus_score=49.3	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4053	.	1	1451747	0	T	A	consensus_score=48.7	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	4054	.	1	1451756	0	T	A	consensus_score=66.8	frequency=1	major_base=A	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	4055	.	1	1451817	0	G	A	consensus_score=84.6	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	4056	.	1	1453151	0	C	T	consensus_score=195.7	frequency=1	major_base=T	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	4057	.	1	1456114	0	A	G	consensus_score=159.0	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	4058	.	1	1456716	0	A	C	consensus_score=168.7	frequency=1	major_base=C	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	4059	.	1	1457122	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4060	.	1	1457241	0	T	A	bias_e_value=0.0428553	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.9	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	4061	.	1	1457614	0	T	G	bias_e_value=239251	bias_p_value=0.113339	consensus_score=145.1	fisher_strand_p_value=0.0245749	frequency=1	ks_quality_p_value=0.974709	major_base=G	major_cov=34/28	major_frequency=9.118e-01	minor_base=T	minor_cov=0/6	new_cov=34/28	polymorphism_frequency=9.118e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/6	total_cov=34/34
RA	4062	.	1	1457775	0	T	C	consensus_score=210.0	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	4063	.	1	1458876	0	T	C	consensus_score=175.6	frequency=1	major_base=C	major_cov=18/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/40
RA	4064	.	1	1459489	0	C	A	bias_e_value=1201450	bias_p_value=0.569155	consensus_score=113.0	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	4065	.	1	1460406	0	G	T	consensus_score=258.9	frequency=1	major_base=T	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	4066	.	1	1461349	0	T	C	consensus_score=180.9	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4067	.	1	1462025	0	A	C	consensus_score=235.1	frequency=1	major_base=C	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	4068	.	1	1462133	0	T	C	consensus_score=239.4	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4069	.	1	1464401	0	A	G	consensus_score=182.7	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4070	.	1	1466308	0	C	T	bias_e_value=1756340	bias_p_value=0.832019	consensus_score=214.6	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=0.997083	major_base=T	major_cov=37/41	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=37/41	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/41
RA	4071	.	1	1466399	0	G	A	bias_e_value=1775470	bias_p_value=0.841081	consensus_score=197.1	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=0.998392	major_base=A	major_cov=34/36	major_frequency=9.859e-01	minor_base=G	minor_cov=1/0	new_cov=34/36	polymorphism_frequency=9.859e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=35/36
RA	4072	.	1	1466929	0	A	C	consensus_score=237.5	frequency=1	major_base=C	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	4073	.	1	1468710	0	C	T	consensus_score=286.2	frequency=1	major_base=T	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4074	.	1	1469221	0	G	A	consensus_score=254.2	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	4075	.	1	1469374	0	A	G	consensus_score=262.3	frequency=1	major_base=G	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	4076	.	1	1470247	0	G	A	consensus_score=244.5	frequency=1	major_base=A	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	4077	.	1	1470310	0	C	G	consensus_score=243.5	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	4078	.	1	1470949	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	4079	.	1	1472236	0	C	T	consensus_score=152.3	frequency=1	major_base=T	major_cov=8/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/47
RA	4080	.	1	1472383	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=206.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/42	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=33/42	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/43
RA	4081	.	1	1473425	0	C	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	4082	.	1	1473542	0	C	T	consensus_score=300.3	frequency=1	major_base=T	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	4083	.	1	1476256	0	C	.	consensus_score=106.3	frequency=1	major_base=.	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4084	.	1	1477072	0	G	A	consensus_score=242.1	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	4085	.	1	1477231	0	C	.	consensus_score=425.2	frequency=1	major_base=.	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	4086	.	1	1478171	0	C	T	bias_e_value=91972.1	bias_p_value=0.0435694	consensus_score=179.8	fisher_strand_p_value=0.00737207	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/45	major_frequency=9.324e-01	minor_base=C	minor_cov=5/0	new_cov=24/45	polymorphism_frequency=9.324e-01	polymorphism_score=NA	prediction=consensus	ref_cov=5/0	total_cov=29/45
RA	4087	.	1	1480595	0	T	C	consensus_score=286.1	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4088	.	1	1480640	0	T	G	consensus_score=295.3	frequency=1	major_base=G	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	4089	.	1	1482246	0	T	C	consensus_score=240.6	frequency=1	major_base=C	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4090	.	1	1483135	0	A	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4091	.	1	1486589	0	G	A	consensus_score=264.4	frequency=1	major_base=A	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	4092	.	1	1486655	0	A	C	consensus_score=263.1	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	4093	.	1	1487073	0	T	C	consensus_score=230.4	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4094	.	1	1488358	0	C	T	consensus_score=196.2	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4095	.	1	1488717	0	G	A	bias_e_value=1.27129	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	4096	.	1	1488760	0	T	A	bias_e_value=96.3905	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	4097	.	1	1489207	0	A	G	consensus_score=234.3	frequency=1	major_base=G	major_cov=29/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/52
RA	4098	.	1	1489813	0	C	T	consensus_score=237.8	frequency=1	major_base=T	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	4099	.	1	1489947	0	G	T	bias_e_value=0.000297033	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.1	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	4100	.	1	1489967	0	G	C	bias_e_value=2.45519e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.8	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	4101	.	1	1490013	0	G	C	bias_e_value=0.591957	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.3	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	4102	.	1	1491288	0	T	C	bias_e_value=1484530	bias_p_value=0.703257	consensus_score=288.0	fisher_strand_p_value=0.336735	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=65/32	major_frequency=9.898e-01	minor_base=A	minor_cov=0/1	new_cov=65/32	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/33
RA	4103	.	1	1492064	0	G	T	consensus_score=307.2	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4104	.	1	1492203	0	A	G	bias_e_value=2058700	bias_p_value=0.975255	consensus_score=317.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.785946	major_base=G	major_cov=44/65	major_frequency=9.909e-01	minor_base=.	minor_cov=0/1	new_cov=44/65	polymorphism_frequency=9.909e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=44/66
RA	4105	.	1	1493966	0	C	A	consensus_score=260.2	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4106	.	1	1494626	0	C	A	bias_e_value=741709	bias_p_value=0.351365	consensus_score=255.9	fisher_strand_p_value=0.109351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/42	major_frequency=9.677e-01	minor_base=C	minor_cov=0/3	new_cov=48/42	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=48/45
RA	4107	.	1	1495017	0	G	A	consensus_score=179.1	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	4108	.	1	1495901	0	C	T	bias_e_value=1765720	bias_p_value=0.836465	consensus_score=316.1	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.905e-01	minor_base=A	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	4109	.	1	1496913	1	.	T	consensus_score=209.3	frequency=1	major_base=T	major_cov=45/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	4110	.	1	1497864	1	.	C	bias_e_value=2110930	bias_p_value=1	consensus_score=216.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	4111	.	1	1499513	0	T	C	consensus_score=250.4	frequency=1	major_base=C	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	4112	.	1	1499560	0	C	T	consensus_score=234.7	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4113	.	1	1500199	0	A	C	consensus_score=431.2	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	4114	.	1	1500960	0	C	T	consensus_score=264.2	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4115	.	1	1501203	0	C	A	consensus_score=348.0	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	4116	.	1	1502727	0	G	C	consensus_score=314.5	frequency=1	major_base=C	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	4117	.	1	1504542	0	G	A	consensus_score=335.1	frequency=1	major_base=A	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	4118	.	1	1504581	0	A	G	consensus_score=335.3	frequency=1	major_base=G	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	4119	.	1	1504722	0	C	T	consensus_score=272.7	frequency=1	major_base=T	major_cov=59/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/33
RA	4120	.	1	1505438	0	A	G	consensus_score=215.7	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4121	.	1	1505868	0	T	C	bias_e_value=1519030	bias_p_value=0.7196	consensus_score=327.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.352066	major_base=C	major_cov=52/61	major_frequency=9.912e-01	minor_base=T	minor_cov=0/1	new_cov=52/61	polymorphism_frequency=9.912e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=52/62
RA	4122	.	1	1506475	0	A	C	bias_e_value=6.18761e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/15	major_frequency=6.667e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=45/15	total_cov=45/46
RA	4123	.	1	1508143	0	C	T	consensus_score=212.5	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4124	.	1	1509678	0	T	C	consensus_score=240.0	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	4125	.	1	1509837	0	T	C	consensus_score=317.6	frequency=1	major_base=C	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	4126	.	1	1512293	0	T	C	consensus_score=243.9	frequency=1	major_base=C	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4127	.	1	1512296	0	A	C	consensus_score=238.7	frequency=1	major_base=C	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4128	.	1	1513392	0	A	G	consensus_score=158.0	frequency=1	major_base=G	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	4129	.	1	1514002	0	T	C	consensus_score=311.6	frequency=1	major_base=C	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	4130	.	1	1516015	0	A	G	bias_e_value=774763	bias_p_value=0.367024	consensus_score=257.3	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	4131	.	1	1516654	0	A	G	consensus_score=135.1	frequency=1	major_base=G	major_cov=39/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/9
RA	4132	.	1	1518424	1	.	T	bias_e_value=1612350	bias_p_value=0.76381	consensus_score=189.5	fisher_strand_p_value=0.397059	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/26	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=41/26	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	4133	.	1	1519179	0	C	T	consensus_score=165.7	frequency=1	major_base=T	major_cov=16/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/39
RA	4134	.	1	1519813	0	G	A	consensus_score=139.2	frequency=1	major_base=A	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	4135	.	1	1519906	0	C	T	consensus_score=66.1	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	4136	.	1	1520992	0	T	C	consensus_score=193.4	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4137	.	1	1522037	0	A	G	bias_e_value=486883	bias_p_value=0.230648	consensus_score=197.7	fisher_strand_p_value=0.0607526	frequency=1	ks_quality_p_value=0.998417	major_base=G	major_cov=40/37	major_frequency=9.390e-01	minor_base=C	minor_cov=5/0	new_cov=40/37	polymorphism_frequency=9.390e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	4138	.	1	1522692	0	C	T	consensus_score=190.5	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	4139	.	1	1524459	0	C	T	consensus_score=176.1	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	4140	.	1	1524546	0	C	T	consensus_score=191.1	frequency=1	major_base=T	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	4141	.	1	1526281	0	C	T	consensus_score=187.6	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4142	.	1	1529103	0	G	T	bias_e_value=0.0894097	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	4143	.	1	1529109	0	C	A	bias_e_value=0.0342503	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.5	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	4144	.	1	1531488	0	T	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4145	.	1	1531873	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4146	.	1	1532385	0	A	G	consensus_score=184.8	frequency=1	major_base=G	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	4147	.	1	1532909	0	G	T	consensus_score=189.7	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4148	.	1	1532997	0	C	T	bias_e_value=1651940	bias_p_value=0.782562	consensus_score=152.3	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.964488	major_base=T	major_cov=25/34	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=25/34	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/34
RA	4149	.	1	1533644	0	C	A	consensus_score=191.3	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4150	.	1	1535354	0	C	T	consensus_score=201.8	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	4151	.	1	1535841	0	T	C	consensus_score=217.0	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4152	.	1	1536967	0	G	A	bias_e_value=0.389704	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.1	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	4153	.	1	1536982	0	G	A	bias_e_value=1730890	bias_p_value=0.819962	consensus_score=173.3	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	4154	.	1	1537737	0	A	G	bias_e_value=1578570	bias_p_value=0.747806	consensus_score=203.8	fisher_strand_p_value=0.380282	frequency=1	ks_quality_p_value=0.999598	major_base=G	major_cov=26/44	major_frequency=9.859e-01	minor_base=T	minor_cov=1/0	new_cov=26/44	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4155	.	1	1540413	0	T	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4156	.	1	1540491	0	A	G	consensus_score=295.4	frequency=1	major_base=G	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	4157	.	1	1541155	0	A	C	consensus_score=306.7	frequency=1	major_base=C	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	4158	.	1	1542342	0	C	T	consensus_score=148.5	frequency=1	major_base=T	major_cov=6/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/43
RA	4159	.	1	1542388	0	A	G	consensus_score=124.0	frequency=1	major_base=G	major_cov=1/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/42
RA	4160	.	1	1543088	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	4161	.	1	1543089	0	C	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	4162	.	1	1545142	0	G	A	consensus_score=158.4	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	4163	.	1	1547773	0	G	A	consensus_score=236.7	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4164	.	1	1548942	0	A	G	consensus_score=157.2	frequency=1	major_base=G	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	4165	.	1	1549866	0	C	T	bias_e_value=555.192	bias_p_value=0.000263008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=2.24732e-05	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=29/22	major_frequency=7.612e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.388e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=29/22	total_cov=29/38
RA	4166	.	1	1551159	0	G	A	consensus_score=165.1	frequency=1	major_base=A	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4167	.	1	1553921	0	A	G	consensus_score=159.4	frequency=1	major_base=G	major_cov=28/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/28
RA	4168	.	1	1555758	0	C	T	consensus_score=198.7	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4169	.	1	1555843	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4170	.	1	1557962	0	T	C	consensus_score=163.5	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4171	.	1	1558577	0	C	A	consensus_score=82.6	frequency=1	major_base=A	major_cov=23/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/7
RA	4172	.	1	1558978	0	C	T	consensus_score=102.3	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	4173	.	1	1559149	0	C	T	consensus_score=114.5	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	4174	.	1	1559413	0	T	C	consensus_score=245.9	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4175	.	1	1561201	0	C	T	consensus_score=247.4	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	4176	.	1	1561994	0	A	G	consensus_score=236.7	frequency=1	major_base=G	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	4177	.	1	1564248	0	A	G	consensus_score=160.5	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	4178	.	1	1564464	0	G	A	consensus_score=226.0	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4179	.	1	1565115	0	G	A	consensus_score=206.0	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4180	.	1	1566336	0	G	A	consensus_score=90.1	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	4181	.	1	1567326	0	T	C	consensus_score=134.4	frequency=1	major_base=C	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	4182	.	1	1568091	0	C	T	consensus_score=61.1	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4183	.	1	1568288	0	G	T	consensus_score=159.9	frequency=1	major_base=T	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	4184	.	1	1568502	0	G	T	consensus_score=41.2	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	4185	.	1	1569308	0	A	G	consensus_score=202.5	frequency=1	major_base=G	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	4186	.	1	1570379	0	G	A	consensus_score=269.7	frequency=1	major_base=A	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	4187	.	1	1576280	0	T	C	consensus_score=12.2	deleted=1	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	4188	.	1	1576377	0	T	C	consensus_score=60.6	deleted=1	frequency=1	major_base=C	major_cov=17/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/6
RA	4189	.	1	1577284	0	T	C	consensus_score=226.5	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4190	.	1	1579637	0	T	C	consensus_score=184.3	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	4191	.	1	1580668	0	T	G	consensus_score=237.2	frequency=1	major_base=G	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	4192	.	1	1581174	0	G	A	consensus_score=191.3	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	4193	.	1	1581314	0	C	T	consensus_score=219.8	frequency=1	major_base=T	major_cov=46/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	4194	.	1	1584971	0	T	G	consensus_score=206.6	frequency=1	major_base=G	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	4195	.	1	1585519	0	G	A	consensus_score=191.6	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4196	.	1	1586543	0	G	T	consensus_score=208.6	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4197	.	1	1587457	0	G	A	consensus_score=243.7	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	4198	.	1	1589465	0	A	C	consensus_score=182.3	frequency=1	major_base=C	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4199	.	1	1596013	0	T	C	consensus_score=268.5	frequency=1	major_base=C	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	4200	.	1	1596339	0	C	T	consensus_score=59.0	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	4201	.	1	1596542	0	T	C	consensus_score=109.9	frequency=1	major_base=C	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	4202	.	1	1597262	0	G	A	consensus_score=61.7	frequency=1	major_base=A	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	4203	.	1	1600387	0	A	C	consensus_score=149.8	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	4204	.	1	1600872	0	A	T	bias_e_value=801.167	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	4205	.	1	1601021	0	C	T	consensus_score=142.9	frequency=1	major_base=T	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	4206	.	1	1601548	0	A	G	consensus_score=220.7	frequency=1	major_base=G	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	4207	.	1	1601858	0	T	C	consensus_score=288.7	frequency=1	major_base=C	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	4208	.	1	1602586	0	G	A	consensus_score=159.7	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	4209	.	1	1603010	0	T	C	consensus_score=193.8	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4210	.	1	1604050	0	A	T	consensus_score=91.4	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4211	.	1	1604052	0	A	G	consensus_score=97.4	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4212	.	1	1604056	0	C	T	consensus_score=87.4	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4213	.	1	1604103	0	A	G	consensus_score=64.9	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4214	.	1	1604106	0	T	C	consensus_score=66.3	frequency=1	major_base=C	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4215	.	1	1607020	0	A	C	consensus_score=123.1	frequency=1	major_base=C	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	4216	.	1	1608408	0	T	C	consensus_score=174.6	frequency=1	major_base=C	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4217	.	1	1610106	0	C	G	bias_e_value=1700100	bias_p_value=0.805376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.3	fisher_strand_p_value=0.489012	frequency=3.214e-01	ks_quality_p_value=0.91017	major_base=C	major_cov=31/26	major_frequency=6.786e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.214e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=31/26	total_cov=48/36
RA	4218	.	1	1610181	0	C	T	bias_e_value=1615820	bias_p_value=0.76545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.3	fisher_strand_p_value=0.699419	frequency=4.495e-01	ks_quality_p_value=0.570243	major_base=C	major_cov=31/29	major_frequency=5.505e-01	minor_base=T	minor_cov=28/21	new_cov=28/21	polymorphism_frequency=4.495e-01	polymorphism_score=101.9	prediction=polymorphism	ref_cov=31/29	total_cov=59/50
RA	4219	.	1	1610184	0	A	G	bias_e_value=731033	bias_p_value=0.346308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.0	fisher_strand_p_value=0.12705	frequency=4.815e-01	ks_quality_p_value=0.842786	major_base=A	major_cov=26/30	major_frequency=5.185e-01	minor_base=G	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=4.815e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=26/30	total_cov=58/50
RA	4220	.	1	1610238	0	A	G	bias_e_value=9464.92	bias_p_value=0.00448376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.5	fisher_strand_p_value=0.703762	frequency=5.877e-01	ks_quality_p_value=0.000744843	major_base=G	major_cov=35/32	major_frequency=5.877e-01	minor_base=A	minor_cov=22/25	new_cov=35/32	polymorphism_frequency=5.877e-01	polymorphism_score=100.4	prediction=polymorphism	ref_cov=22/25	total_cov=58/58
RA	4221	.	1	1610285	0	T	C	bias_e_value=1571110	bias_p_value=0.744271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.2	fisher_strand_p_value=0.836889	frequency=3.495e-01	ks_quality_p_value=0.44987	major_base=T	major_cov=34/33	major_frequency=6.505e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.495e-01	polymorphism_score=64.1	prediction=polymorphism	ref_cov=34/33	total_cov=53/52
RA	4222	.	1	1610286	0	C	A	bias_e_value=770960	bias_p_value=0.365222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=0.30745	frequency=3.271e-01	ks_quality_p_value=0.3763	major_base=C	major_cov=39/33	major_frequency=6.729e-01	minor_base=A	minor_cov=15/20	new_cov=15/20	polymorphism_frequency=3.271e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=39/33	total_cov=55/53
RA	4223	.	1	1610287	0	C	A	bias_e_value=249200	bias_p_value=0.118052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.0	fisher_strand_p_value=0.215014	frequency=3.333e-01	ks_quality_p_value=0.117319	major_base=C	major_cov=38/32	major_frequency=6.667e-01	minor_base=A	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=3.333e-01	polymorphism_score=77.4	prediction=polymorphism	ref_cov=38/32	total_cov=55/53
RA	4224	.	1	1611523	0	G	A	consensus_score=284.8	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	4225	.	1	1613165	0	A	G	consensus_score=189.0	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4226	.	1	1613639	0	C	T	consensus_score=230.7	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4227	.	1	1614268	0	G	C	bias_e_value=1609960	bias_p_value=0.762677	consensus_score=132.8	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=29/19
RA	4228	.	1	1615633	0	C	T	bias_e_value=0.00100018	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.7	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	4229	.	1	1615823	0	C	G	consensus_score=214.3	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4230	.	1	1617023	0	A	G	consensus_score=185.7	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	4231	.	1	1618046	0	T	C	bias_e_value=751071	bias_p_value=0.3558	consensus_score=232.7	fisher_strand_p_value=0.341463	frequency=1	ks_quality_p_value=0.326134	major_base=C	major_cov=27/54	major_frequency=9.878e-01	minor_base=T	minor_cov=1/0	new_cov=27/54	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=28/54
RA	4232	.	1	1618393	0	C	T	consensus_score=205.8	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	4233	.	1	1619502	0	A	G	consensus_score=75.1	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4234	.	1	1621305	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	4235	.	1	1623097	0	A	T	consensus_score=179.6	frequency=1	major_base=T	major_cov=22/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/41
RA	4236	.	1	1624108	0	A	T	bias_e_value=0.0535172	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.5	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	4237	.	1	1624653	0	A	G	consensus_score=225.0	frequency=1	major_base=G	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4238	.	1	1624860	0	A	G	bias_e_value=1598990	bias_p_value=0.757481	consensus_score=222.5	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.892043	major_base=G	major_cov=34/45	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=34/45	polymorphism_frequency=9.875e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=35/45
RA	4239	.	1	1628424	0	G	T	consensus_score=176.1	frequency=1	major_base=T	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	4240	.	1	1628475	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=215.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/32	major_frequency=9.868e-01	minor_base=G	minor_cov=1/0	new_cov=43/32	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/32
RA	4241	.	1	1628842	0	T	G	consensus_score=213.8	frequency=1	major_base=G	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4242	.	1	1629063	0	T	C	consensus_score=255.9	frequency=1	major_base=C	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	4243	.	1	1630210	0	T	G	consensus_score=178.1	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	4244	.	1	1632982	0	T	G	consensus_score=163.1	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	4245	.	1	1633728	0	G	A	consensus_score=167.5	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	4246	.	1	1634127	0	A	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	4247	.	1	1634266	0	C	T	bias_e_value=2110930	bias_p_value=0.999998	consensus_score=260.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997805	major_base=T	major_cov=39/51	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=39/51	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/53
RA	4248	.	1	1634637	0	C	T	consensus_score=176.4	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4249	.	1	1634725	0	A	C	bias_e_value=0.0472878	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	4250	.	1	1635055	0	A	C	consensus_score=151.1	frequency=1	major_base=C	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	4251	.	1	1636555	0	G	A	consensus_score=245.9	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4252	.	1	1636826	0	T	G	consensus_score=129.1	frequency=1	major_base=G	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	4253	.	1	1638977	0	G	A	consensus_score=239.9	frequency=1	major_base=A	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4254	.	1	1638999	0	A	C	consensus_score=251.8	frequency=1	major_base=C	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4255	.	1	1639716	0	G	T	bias_e_value=2110930	bias_p_value=1	consensus_score=286.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/51	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=48/51	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/52
RA	4256	.	1	1643250	0	C	T	consensus_score=174.2	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	4257	.	1	1647699	0	T	C	consensus_score=205.0	frequency=1	major_base=C	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4258	.	1	1647936	0	A	G	consensus_score=304.8	frequency=1	major_base=G	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	4259	.	1	1648375	0	G	A	consensus_score=261.5	frequency=1	major_base=A	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	4260	.	1	1649959	0	G	T	consensus_score=233.5	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4261	.	1	1653969	0	G	A	consensus_score=298.7	frequency=1	major_base=A	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	4262	.	1	1654036	0	C	T	consensus_score=230.9	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4263	.	1	1654905	0	C	T	consensus_score=270.5	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	4264	.	1	1655373	0	T	C	consensus_score=306.2	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	4265	.	1	1655414	0	G	A	consensus_score=277.9	frequency=1	major_base=A	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	4266	.	1	1657901	1	.	T	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=240.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998853	major_base=T	major_cov=42/41	major_frequency=9.881e-01	minor_base=.	minor_cov=1/0	new_cov=42/41	polymorphism_frequency=9.881e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=43/41
RA	4267	.	1	1658680	0	C	T	consensus_score=364.4	frequency=1	major_base=T	major_cov=63/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/62
RA	4268	.	1	1659741	0	C	T	consensus_score=340.9	frequency=1	major_base=T	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	4269	.	1	1659756	0	A	G	consensus_score=320.8	frequency=1	major_base=G	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	4270	.	1	1660131	0	T	C	consensus_score=298.8	frequency=1	major_base=C	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4271	.	1	1661695	0	T	C	consensus_score=323.8	frequency=1	major_base=C	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	4272	.	1	1661917	0	C	T	bias_e_value=0.0146255	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.3	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	4273	.	1	1664131	0	A	G	consensus_score=347.0	frequency=1	major_base=G	major_cov=47/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/66
RA	4274	.	1	1667712	0	T	C	consensus_score=18.1	frequency=1	major_base=C	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	4275	.	1	1667962	0	G	A	consensus_score=194.8	frequency=1	major_base=A	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	4276	.	1	1673707	0	T	C	consensus_score=110.6	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	4277	.	1	1674362	0	G	A	consensus_score=150.5	frequency=1	major_base=A	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4278	.	1	1675280	0	A	G	consensus_score=227.0	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	4279	.	1	1675530	0	C	T	consensus_score=210.6	frequency=1	major_base=T	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	4280	.	1	1677754	0	T	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	4281	.	1	1677933	0	G	A	consensus_score=233.5	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4282	.	1	1679095	0	G	A	consensus_score=238.0	frequency=1	major_base=A	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	4283	.	1	1680930	0	A	C	consensus_score=366.4	frequency=1	major_base=C	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	4284	.	1	1681018	0	A	G	consensus_score=319.6	frequency=1	major_base=G	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	4285	.	1	1681161	0	T	C	consensus_score=282.7	frequency=1	major_base=C	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4286	.	1	1681957	0	A	C	consensus_score=218.5	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4287	.	1	1684002	0	G	A	consensus_score=227.1	frequency=1	major_base=A	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	4288	.	1	1688038	0	A	G	consensus_score=223.0	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	4289	.	1	1690089	0	G	A	bias_e_value=1587680	bias_p_value=0.75212	consensus_score=127.4	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/19	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=32/19	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/20
RA	4290	.	1	1690409	0	G	A	consensus_score=236.3	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4291	.	1	1692038	0	G	A	consensus_score=202.6	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4292	.	1	1692437	0	G	A	bias_e_value=0.0028651	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.8	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	4293	.	1	1692483	0	C	T	bias_e_value=0.517085	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	4294	.	1	1692530	0	G	A	consensus_score=243.6	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4295	.	1	1693184	0	C	T	consensus_score=140.1	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4296	.	1	1693285	0	A	G	consensus_score=168.3	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4297	.	1	1697551	0	C	T	consensus_score=189.1	frequency=1	major_base=T	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4298	.	1	1698090	0	C	T	bias_e_value=1822770	bias_p_value=0.863491	consensus_score=231.1	fisher_strand_p_value=0.525316	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/30	major_frequency=9.750e-01	minor_base=C	minor_cov=2/0	new_cov=48/30	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=50/30
RA	4299	.	1	1699651	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4300	.	1	1700895	0	T	C	consensus_score=205.9	frequency=1	major_base=C	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	4301	.	1	1701986	0	A	G	consensus_score=304.7	frequency=1	major_base=G	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4302	.	1	1704092	0	A	T	bias_e_value=0.000188259	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	4303	.	1	1704116	0	T	G	bias_e_value=0.00101285	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.9	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	4304	.	1	1708448	0	G	T	consensus_score=230.8	frequency=1	major_base=T	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	4305	.	1	1708808	0	C	T	consensus_score=298.8	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	4306	.	1	1709594	0	C	T	consensus_score=190.7	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	4307	.	1	1713265	0	C	T	bias_e_value=11.0419	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.3	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	4308	.	1	1713295	0	A	C	bias_e_value=2.52212e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.5	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	4309	.	1	1714210	0	A	G	consensus_score=273.7	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	4310	.	1	1715939	0	A	G	consensus_score=195.7	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4311	.	1	1716571	0	T	G	consensus_score=293.6	frequency=1	major_base=G	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	4312	.	1	1717735	0	T	G	consensus_score=179.9	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	4313	.	1	1717941	0	T	A	bias_e_value=0.00809216	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.9	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	4314	.	1	1721456	0	C	G	consensus_score=36.6	frequency=1	major_base=G	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	4315	.	1	1724445	0	G	A	consensus_score=222.1	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4316	.	1	1729530	0	C	T	consensus_score=226.8	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4317	.	1	1729569	0	G	A	consensus_score=210.8	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4318	.	1	1731720	0	G	A	consensus_score=225.1	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4319	.	1	1733166	0	G	A	consensus_score=234.9	frequency=1	major_base=A	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	4320	.	1	1734419	0	T	G	consensus_score=226.7	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4321	.	1	1737612	0	T	C	consensus_score=15.1	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4322	.	1	1738903	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4323	.	1	1740334	0	G	A	consensus_score=221.0	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	4324	.	1	1740971	0	C	A	consensus_score=272.4	frequency=1	major_base=A	major_cov=39/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/54
RA	4325	.	1	1741759	0	G	A	bias_e_value=1237360	bias_p_value=0.586168	consensus_score=256.0	fisher_strand_p_value=0.242574	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/48	major_frequency=9.802e-01	minor_base=G	minor_cov=0/2	new_cov=51/48	polymorphism_frequency=9.802e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=51/50
RA	4326	.	1	1752284	0	T	C	consensus_score=416.0	frequency=1	major_base=C	major_cov=55/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/80
RA	4327	.	1	1753524	0	A	C	consensus_score=173.4	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	4328	.	1	1754208	0	A	G	consensus_score=297.3	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	4329	.	1	1755700	0	G	A	consensus_score=278.2	frequency=1	major_base=A	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4330	.	1	1756457	0	T	C	consensus_score=283.5	frequency=1	major_base=C	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4331	.	1	1756932	0	G	A	consensus_score=220.4	frequency=1	major_base=A	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	4332	.	1	1757807	0	T	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4333	.	1	1761344	0	G	A	consensus_score=233.0	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	4334	.	1	1763653	0	T	G	consensus_score=201.0	frequency=1	major_base=G	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4335	.	1	1763892	0	A	G	consensus_score=233.1	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4336	.	1	1764941	0	G	A	consensus_score=286.8	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	4337	.	1	1765113	0	T	.	consensus_score=339.1	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4338	.	1	1765114	0	T	.	consensus_score=339.1	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4339	.	1	1766825	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4340	.	1	1772070	0	T	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	4341	.	1	1772121	0	T	A	consensus_score=131.2	frequency=1	major_base=A	major_cov=16/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/31
RA	4342	.	1	1772741	0	C	T	consensus_score=215.1	frequency=1	major_base=T	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4343	.	1	1773041	0	C	T	consensus_score=201.5	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4344	.	1	1774438	0	C	T	consensus_score=197.7	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	4345	.	1	1775053	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=268.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999771	major_base=A	major_cov=50/43	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=50/43	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4346	.	1	1775491	0	A	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4347	.	1	1775854	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=204.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/38	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=35/38	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	4348	.	1	1782324	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=217.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=T	major_cov=42/37	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=42/37	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4349	.	1	1783035	0	T	C	consensus_score=217.6	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	4350	.	1	1783506	0	T	C	consensus_score=244.3	frequency=1	major_base=C	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4351	.	1	1784394	0	A	G	consensus_score=241.0	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4352	.	1	1784420	0	A	C	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=243.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998766	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=.	minor_cov=1/0	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4353	.	1	1785201	0	C	A	consensus_score=224.6	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4354	.	1	1786470	0	A	C	consensus_score=179.3	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	4355	.	1	1786627	0	G	A	consensus_score=186.4	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4356	.	1	1787239	0	A	G	consensus_score=304.2	frequency=1	major_base=G	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	4357	.	1	1787304	0	C	T	consensus_score=271.5	frequency=1	major_base=T	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	4358	.	1	1790468	0	G	A	consensus_score=346.6	frequency=1	major_base=A	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	4359	.	1	1791865	0	A	.	consensus_score=369.6	frequency=1	major_base=.	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	4360	.	1	1794646	0	G	T	consensus_score=59.7	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	4361	.	1	1796180	0	A	G	consensus_score=217.7	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4362	.	1	1796284	0	T	G	consensus_score=209.6	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4363	.	1	1798074	0	G	A	consensus_score=253.3	frequency=1	major_base=A	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	4364	.	1	1798140	0	T	C	consensus_score=307.3	frequency=1	major_base=C	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	4365	.	1	1798632	0	T	C	consensus_score=265.3	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4366	.	1	1798657	0	G	A	consensus_score=280.0	frequency=1	major_base=A	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4367	.	1	1800067	0	G	A	consensus_score=102.9	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	4368	.	1	1800187	0	T	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=35/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/19
RA	4369	.	1	1800708	0	G	A	consensus_score=230.2	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4370	.	1	1801539	0	G	A	consensus_score=206.9	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4371	.	1	1803557	0	T	C	consensus_score=178.6	frequency=1	major_base=C	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	4372	.	1	1803960	0	T	C	consensus_score=163.8	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	4373	.	1	1805450	0	A	G	consensus_score=197.7	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4374	.	1	1806158	0	T	C	consensus_score=202.7	frequency=1	major_base=C	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	4375	.	1	1806328	0	C	T	consensus_score=158.4	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	4376	.	1	1806393	0	G	A	consensus_score=195.5	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4377	.	1	1808332	0	T	.	consensus_score=106.0	frequency=1	major_base=.	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	4378	.	1	1808520	0	G	C	consensus_score=129.0	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	4379	.	1	1809672	0	C	T	consensus_score=46.0	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4380	.	1	1810623	0	G	A	consensus_score=28.7	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	4381	.	1	1811760	0	T	C	consensus_score=259.7	frequency=1	major_base=C	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	4382	.	1	1819535	0	G	A	consensus_score=174.0	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	4383	.	1	1821464	0	G	A	bias_e_value=2.28805e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	4384	.	1	1821473	0	C	T	bias_e_value=4.31846e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.9	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	4385	.	1	1825989	0	A	G	consensus_score=269.1	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	4386	.	1	1826533	0	A	C	bias_e_value=14.3287	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.0	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	4387	.	1	1827993	0	C	T	bias_e_value=7.94977e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4388	.	1	1827998	0	C	T	bias_e_value=7.94955e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4389	.	1	1828031	0	T	A	bias_e_value=0.0152365	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	4390	.	1	1828714	0	A	G	consensus_score=222.3	frequency=1	major_base=G	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	4391	.	1	1829010	0	A	G	consensus_score=201.4	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4392	.	1	1829582	0	G	T	bias_e_value=2064570	bias_p_value=0.978037	consensus_score=178.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797873	major_base=T	major_cov=39/23	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=40/23
RA	4393	.	1	1831221	0	T	C	consensus_score=199.3	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4394	.	1	1832289	0	A	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4395	.	1	1833381	0	A	G	bias_e_value=1672130	bias_p_value=0.792129	consensus_score=127.6	fisher_strand_p_value=0.436364	frequency=1	ks_quality_p_value=0.983306	major_base=G	major_cov=31/23	major_frequency=9.818e-01	minor_base=A	minor_cov=0/1	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/24
RA	4396	.	1	1840594	0	A	G	consensus_score=21.9	frequency=1	major_base=G	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	4397	.	1	1844458	0	A	G	consensus_score=93.9	frequency=1	major_base=G	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	4398	.	1	1846996	0	C	T	consensus_score=215.0	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4399	.	1	1847633	0	G	C	consensus_score=131.4	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	4400	.	1	1847846	0	A	G	consensus_score=143.0	frequency=1	major_base=G	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4401	.	1	1849114	0	T	A	consensus_score=142.0	frequency=1	major_base=A	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	4402	.	1	1849870	0	C	T	consensus_score=177.2	frequency=1	major_base=T	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4403	.	1	1852357	0	A	G	consensus_score=141.6	frequency=1	major_base=G	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	4404	.	1	1854919	0	A	C	consensus_score=177.6	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4405	.	1	1857672	0	A	G	consensus_score=246.3	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4406	.	1	1860029	0	G	A	consensus_score=208.9	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4407	.	1	1860329	0	G	A	consensus_score=187.0	frequency=1	major_base=A	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4408	.	1	1860337	0	C	A	consensus_score=202.3	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	4409	.	1	1860523	0	C	T	consensus_score=243.0	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4410	.	1	1862194	0	A	G	consensus_score=243.4	frequency=1	major_base=G	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	4411	.	1	1862251	0	A	G	consensus_score=254.3	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4412	.	1	1862352	0	T	C	consensus_score=181.4	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	4413	.	1	1863196	0	T	C	consensus_score=55.1	frequency=1	major_base=C	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	4414	.	1	1863902	0	T	C	consensus_score=243.5	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4415	.	1	1865102	0	A	G	consensus_score=237.1	frequency=1	major_base=G	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	4416	.	1	1872535	0	A	G	consensus_score=336.4	frequency=1	major_base=G	major_cov=59/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/51
RA	4417	.	1	1872538	0	G	A	consensus_score=319.2	frequency=1	major_base=A	major_cov=59/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/51
RA	4418	.	1	1872591	0	T	C	consensus_score=283.7	frequency=1	major_base=C	major_cov=62/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/35
RA	4419	.	1	1872630	0	A	G	bias_e_value=634676	bias_p_value=0.300661	consensus_score=264.2	fisher_strand_p_value=0.376344	frequency=1	ks_quality_p_value=0.232501	major_base=G	major_cov=58/34	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=58/34	polymorphism_frequency=9.892e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=58/35
RA	4420	.	1	1874570	0	A	C	consensus_score=388.3	frequency=1	major_base=C	major_cov=56/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/71
RA	4421	.	1	1874870	0	C	T	consensus_score=420.3	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	4422	.	1	1875288	0	T	G	bias_e_value=2110930	bias_p_value=1	consensus_score=372.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999879	major_base=G	major_cov=61/67	major_frequency=9.922e-01	minor_base=A	minor_cov=0/1	new_cov=61/67	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/68
RA	4423	.	1	1875304	0	G	A	consensus_score=390.5	frequency=1	major_base=A	major_cov=66/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/67
RA	4424	.	1	1877293	0	A	G	consensus_score=356.4	frequency=1	major_base=G	major_cov=50/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/69
RA	4425	.	1	1877441	0	G	A	consensus_score=281.3	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4426	.	1	1878296	0	G	A	consensus_score=330.9	frequency=1	major_base=A	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	4427	.	1	1879029	0	C	T	consensus_score=363.6	frequency=1	major_base=T	major_cov=60/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/69
RA	4428	.	1	1879647	0	G	A	bias_e_value=2097590	bias_p_value=0.993678	consensus_score=408.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.889678	major_base=A	major_cov=63/73	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=63/73	polymorphism_frequency=9.927e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=63/74
RA	4429	.	1	1880949	0	T	C	consensus_score=251.1	frequency=1	major_base=C	major_cov=28/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/60
RA	4430	.	1	1881975	0	A	G	consensus_score=384.5	frequency=1	major_base=G	major_cov=70/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/56
RA	4431	.	1	1883194	0	A	G	consensus_score=343.1	frequency=1	major_base=G	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	4432	.	1	1883242	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=332.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/55	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/55
RA	4433	.	1	1884540	0	C	G	bias_e_value=1995570	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	4434	.	1	1886961	0	T	C	consensus_score=374.7	frequency=1	major_base=C	major_cov=68/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/59
RA	4435	.	1	1887018	0	A	G	consensus_score=402.9	frequency=1	major_base=G	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	4436	.	1	1887072	0	C	T	consensus_score=376.0	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	4437	.	1	1887445	0	T	G	consensus_score=370.6	frequency=1	major_base=G	major_cov=58/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/70
RA	4438	.	1	1889239	0	T	C	consensus_score=292.0	frequency=1	major_base=C	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4439	.	1	1889583	0	G	A	consensus_score=360.9	frequency=1	major_base=A	major_cov=58/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/66
RA	4440	.	1	1889794	0	A	G	consensus_score=378.6	frequency=1	major_base=G	major_cov=55/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/67
RA	4441	.	1	1891183	0	C	T	consensus_score=308.7	frequency=1	major_base=T	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	4442	.	1	1891416	0	T	C	consensus_score=264.0	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	4443	.	1	1892810	0	G	A	consensus_score=342.0	frequency=1	major_base=A	major_cov=57/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/60
RA	4444	.	1	1894009	0	T	C	consensus_score=284.2	frequency=1	major_base=C	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	4445	.	1	1897400	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4446	.	1	1899730	0	T	C	consensus_score=236.1	frequency=1	major_base=C	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	4447	.	1	1899768	0	C	T	consensus_score=227.9	frequency=1	major_base=T	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	4448	.	1	1900823	0	G	A	consensus_score=82.9	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	4449	.	1	1901821	0	C	T	consensus_score=233.0	frequency=1	major_base=T	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4450	.	1	1904857	0	A	G	consensus_score=228.5	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4451	.	1	1905765	0	G	A	consensus_score=299.7	frequency=1	major_base=A	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	4452	.	1	1908830	0	G	A	bias_e_value=1735890	bias_p_value=0.822332	consensus_score=263.3	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/48	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=41/48	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	4453	.	1	1909126	0	C	T	consensus_score=149.2	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	4454	.	1	1909292	0	C	T	consensus_score=261.5	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	4455	.	1	1909424	0	A	G	consensus_score=288.1	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	4456	.	1	1910277	0	A	G	consensus_score=226.9	frequency=1	major_base=G	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	4457	.	1	1910673	0	G	A	consensus_score=209.7	frequency=1	major_base=A	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	4458	.	1	1910953	0	T	C	consensus_score=279.5	frequency=1	major_base=C	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4459	.	1	1911433	0	A	G	consensus_score=300.6	frequency=1	major_base=G	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	4460	.	1	1914153	0	C	T	consensus_score=292.9	frequency=1	major_base=T	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	4461	.	1	1914156	0	A	G	consensus_score=308.1	frequency=1	major_base=G	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	4462	.	1	1914917	0	A	G	consensus_score=241.5	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4463	.	1	1915388	0	C	T	bias_e_value=1031.83	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	4464	.	1	1916400	0	A	G	consensus_score=311.6	frequency=1	major_base=G	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	4465	.	1	1916703	0	C	T	consensus_score=333.3	frequency=1	major_base=T	major_cov=46/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/68
RA	4466	.	1	1917311	0	A	G	consensus_score=307.7	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4467	.	1	1918143	0	C	T	consensus_score=261.9	frequency=1	major_base=T	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	4468	.	1	1918857	0	T	G	consensus_score=318.7	frequency=1	major_base=G	major_cov=47/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/60
RA	4469	.	1	1919363	0	A	T	consensus_score=235.2	frequency=1	major_base=T	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4470	.	1	1919475	0	G	A	bias_e_value=943167	bias_p_value=0.446801	consensus_score=179.9	fisher_strand_p_value=0.156522	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/26	major_frequency=9.714e-01	minor_base=G	minor_cov=0/2	new_cov=42/26	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=42/29
RA	4471	.	1	1919561	0	G	C	bias_e_value=7.62963	bias_p_value=3.61434e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=2.21424e-07	frequency=2.167e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.833e-01	minor_base=C	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.167e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=37/10	total_cov=37/23
RA	4472	.	1	1921045	0	G	A	consensus_score=243.7	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	4473	.	1	1923792	0	C	A	consensus_score=194.4	frequency=1	major_base=A	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	4474	.	1	1926363	0	A	T	bias_e_value=2.38992	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.0	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	4475	.	1	1926381	0	A	T	bias_e_value=0.0852341	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.7	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	4476	.	1	1926796	0	T	G	consensus_score=246.2	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4477	.	1	1926837	0	T	C	consensus_score=249.3	frequency=1	major_base=C	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4478	.	1	1927801	0	A	G	consensus_score=203.6	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	4479	.	1	1928313	0	A	G	consensus_score=249.6	frequency=1	major_base=G	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4480	.	1	1930299	0	C	G	consensus_score=256.6	frequency=1	major_base=G	major_cov=33/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/58
RA	4481	.	1	1930359	0	T	.	consensus_score=350.3	frequency=1	major_base=.	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4482	.	1	1931771	0	A	G	consensus_score=346.3	frequency=1	major_base=G	major_cov=57/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	4483	.	1	1934463	1	.	T	consensus_score=257.6	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	4484	.	1	1935391	0	T	C	bias_e_value=2110790	bias_p_value=0.999933	consensus_score=191.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988413	major_base=C	major_cov=42/23	major_frequency=9.848e-01	minor_base=.	minor_cov=1/0	new_cov=42/23	polymorphism_frequency=9.848e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=43/23
RA	4485	.	1	1935761	0	G	A	consensus_score=217.5	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4486	.	1	1936209	0	C	A	consensus_score=287.6	frequency=1	major_base=A	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	4487	.	1	1937734	0	G	A	consensus_score=241.8	frequency=1	major_base=A	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4488	.	1	1938919	0	G	A	bias_e_value=2.24324	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	4489	.	1	1939606	0	A	.	consensus_score=319.0	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4490	.	1	1943074	0	T	A	bias_e_value=4.52079e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	4491	.	1	1943103	0	T	A	bias_e_value=0.0533881	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.7	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	4492	.	1	1943145	0	T	A	bias_e_value=1.55964e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.9	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	4493	.	1	1943266	0	C	T	consensus_score=134.2	frequency=1	major_base=T	major_cov=16/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/32
RA	4494	.	1	1943834	0	T	G	bias_e_value=1.6956e-07	bias_p_value=8.03246e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=2.31487e-15	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=14/60	major_frequency=7.184e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=14/60	total_cov=43/60
RA	4495	.	1	1943864	0	G	T	bias_e_value=306205	bias_p_value=0.145057	consensus_score=265.2	fisher_strand_p_value=0.0328493	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/60	major_frequency=9.623e-01	minor_base=C	minor_cov=4/0	new_cov=42/60	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	4496	.	1	1945178	0	A	G	consensus_score=229.4	frequency=1	major_base=G	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	4497	.	1	1945262	0	C	T	bias_e_value=1982510	bias_p_value=0.939161	consensus_score=243.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.672109	major_base=T	major_cov=48/39	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=48/39	polymorphism_frequency=9.886e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=49/39
RA	4498	.	1	1945451	0	T	C	consensus_score=232.1	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4499	.	1	1947028	0	G	A	bias_e_value=2110910	bias_p_value=0.999988	consensus_score=219.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995074	major_base=A	major_cov=35/45	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4500	.	1	1947404	0	A	G	consensus_score=224.1	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4501	.	1	1948328	0	C	A	consensus_score=269.8	frequency=1	major_base=A	major_cov=55/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/34
RA	4502	.	1	1949174	0	G	A	consensus_score=240.6	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4503	.	1	1949589	0	A	G	consensus_score=254.9	frequency=1	major_base=G	major_cov=34/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/53
RA	4504	.	1	1950783	0	C	T	consensus_score=240.3	frequency=1	major_base=T	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4505	.	1	1951773	0	A	G	consensus_score=173.9	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4506	.	1	1952916	0	C	T	consensus_score=220.9	frequency=1	major_base=T	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	4507	.	1	1954421	0	A	G	consensus_score=244.9	frequency=1	major_base=G	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4508	.	1	1954870	0	T	C	consensus_score=178.0	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	4509	.	1	1955520	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=219.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/29	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=47/29	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	4510	.	1	1956731	0	G	A	consensus_score=197.0	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4511	.	1	1957143	0	T	G	consensus_score=213.8	frequency=1	major_base=G	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	4512	.	1	1958927	0	G	A	consensus_score=231.5	frequency=1	major_base=A	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4513	.	1	1959112	0	A	C	consensus_score=217.2	frequency=1	major_base=C	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	4514	.	1	1959569	0	T	G	consensus_score=229.5	frequency=1	major_base=G	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	4515	.	1	1961060	0	T	C	consensus_score=163.6	frequency=1	major_base=C	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4516	.	1	1961088	0	C	T	consensus_score=177.6	frequency=1	major_base=T	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	4517	.	1	1961454	0	C	T	consensus_score=135.4	frequency=1	major_base=T	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4518	.	1	1961458	0	A	C	bias_e_value=1210170	bias_p_value=0.573289	consensus_score=131.7	fisher_strand_p_value=0.234043	frequency=1	ks_quality_p_value=0.998111	major_base=C	major_cov=24/21	major_frequency=9.574e-01	minor_base=A	minor_cov=0/2	new_cov=24/21	polymorphism_frequency=9.574e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=24/23
RA	4519	.	1	1962046	0	G	C	consensus_score=269.7	frequency=1	major_base=C	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	4520	.	1	1962665	1	.	T	bias_e_value=1729530	bias_p_value=0.819322	consensus_score=266.4	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=0.957762	major_base=T	major_cov=46/42	major_frequency=9.888e-01	minor_base=.	minor_cov=0/1	new_cov=46/42	polymorphism_frequency=9.888e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=46/43
RA	4521	.	1	1962800	0	T	G	consensus_score=218.1	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	4522	.	1	1964951	0	C	T	consensus_score=220.9	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4523	.	1	1965158	0	T	C	consensus_score=211.7	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4524	.	1	1966195	0	T	C	consensus_score=226.1	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4525	.	1	1967048	0	T	C	consensus_score=224.5	frequency=1	major_base=C	major_cov=47/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/28
RA	4526	.	1	1969104	0	G	A	consensus_score=207.4	frequency=1	major_base=A	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4527	.	1	1970029	0	C	T	consensus_score=251.6	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4528	.	1	1971573	0	G	A	consensus_score=223.4	frequency=1	major_base=A	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	4529	.	1	1972170	0	T	C	consensus_score=270.9	frequency=1	major_base=C	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	4530	.	1	1972514	0	T	G	consensus_score=290.2	frequency=1	major_base=G	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4531	.	1	1972860	0	T	C	consensus_score=230.1	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	4532	.	1	1972881	0	T	C	consensus_score=204.5	frequency=1	major_base=C	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	4533	.	1	1972905	0	T	C	consensus_score=208.3	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4534	.	1	1972915	0	A	C	consensus_score=204.0	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4535	.	1	1972936	0	T	C	consensus_score=222.5	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4536	.	1	1972959	0	A	G	consensus_score=237.4	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4537	.	1	1972971	0	T	C	consensus_score=240.9	frequency=1	major_base=C	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	4538	.	1	1972998	0	T	C	consensus_score=227.3	frequency=1	major_base=C	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	4539	.	1	1973004	0	A	G	consensus_score=218.8	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4540	.	1	1973005	0	G	C	consensus_score=218.6	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4541	.	1	1973007	0	A	G	consensus_score=227.2	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4542	.	1	1973043	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4543	.	1	1973048	0	G	A	consensus_score=231.5	frequency=1	major_base=A	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4544	.	1	1973079	0	C	T	consensus_score=205.5	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	4545	.	1	1973089	1	.	T	bias_e_value=1765720	bias_p_value=0.836465	consensus_score=197.5	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/36	major_frequency=9.857e-01	minor_base=A	minor_cov=1/0	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4546	.	1	1973089	2	.	C	consensus_score=211.2	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4547	.	1	1973093	0	C	T	consensus_score=199.5	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4548	.	1	1973102	0	A	.	consensus_score=304.0	frequency=1	major_base=.	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4549	.	1	1973238	0	C	A	consensus_score=223.3	frequency=1	major_base=A	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	4550	.	1	1973298	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=241.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/34	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=49/34	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/34
RA	4551	.	1	1973304	0	C	A	consensus_score=237.6	frequency=1	major_base=A	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	4552	.	1	1973319	0	G	A	consensus_score=263.4	frequency=1	major_base=A	major_cov=54/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	4553	.	1	1973376	0	C	T	consensus_score=296.9	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4554	.	1	1973388	0	A	G	consensus_score=292.6	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	4555	.	1	1973415	0	C	T	consensus_score=304.8	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	4556	.	1	1973418	0	C	T	consensus_score=292.1	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	4557	.	1	1973424	0	T	C	consensus_score=316.4	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	4558	.	1	1973463	0	A	G	consensus_score=288.6	frequency=1	major_base=G	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4559	.	1	1973622	0	C	T	consensus_score=218.2	frequency=1	major_base=T	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	4560	.	1	1973652	0	A	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	4561	.	1	1973667	0	C	T	consensus_score=207.8	frequency=1	major_base=T	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4562	.	1	1973673	0	C	T	consensus_score=203.2	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	4563	.	1	1973703	0	C	T	consensus_score=226.2	frequency=1	major_base=T	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	4564	.	1	1973745	0	C	T	consensus_score=274.8	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4565	.	1	1973775	0	T	C	consensus_score=296.4	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	4566	.	1	1973880	0	T	C	consensus_score=319.4	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	4567	.	1	1973883	0	C	T	consensus_score=305.8	frequency=1	major_base=T	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	4568	.	1	1973919	0	A	G	consensus_score=305.4	frequency=1	major_base=G	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	4569	.	1	1973946	0	T	C	consensus_score=278.1	frequency=1	major_base=C	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	4570	.	1	1974026	0	C	T	bias_e_value=1430170	bias_p_value=0.677507	consensus_score=212.2	fisher_strand_p_value=0.402597	frequency=1	ks_quality_p_value=0.779466	major_base=T	major_cov=30/46	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=30/46	polymorphism_frequency=9.870e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=31/46
RA	4571	.	1	1974083	0	G	A	consensus_score=241.0	frequency=1	major_base=A	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4572	.	1	1974163	0	C	A	bias_e_value=2110930	bias_p_value=1	consensus_score=185.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=A	major_cov=29/37	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=29/37	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	4573	.	1	1974191	0	A	G	consensus_score=200.6	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4574	.	1	1974209	0	C	T	consensus_score=184.5	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4575	.	1	1974219	0	C	T	consensus_score=173.4	frequency=1	major_base=T	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	4576	.	1	1974242	0	T	C	consensus_score=201.0	frequency=1	major_base=C	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	4577	.	1	1974257	0	T	C	consensus_score=190.1	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	4578	.	1	1974263	0	A	C	consensus_score=194.2	frequency=1	major_base=C	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4579	.	1	1974275	0	A	G	consensus_score=187.1	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	4580	.	1	1974296	0	T	C	consensus_score=201.5	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4581	.	1	1974320	0	T	C	consensus_score=206.3	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4582	.	1	1974344	0	G	A	consensus_score=217.3	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	4583	.	1	1974367	0	T	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	4584	.	1	1974470	0	T	C	consensus_score=191.9	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4585	.	1	1974491	0	T	C	consensus_score=180.6	frequency=1	major_base=C	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	4586	.	1	1974497	0	A	C	consensus_score=176.9	frequency=1	major_base=C	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	4587	.	1	1974536	0	A	G	consensus_score=168.1	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4588	.	1	1974540	0	A	G	consensus_score=162.5	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4589	.	1	1974569	0	C	T	consensus_score=204.7	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	4590	.	1	1974608	0	G	C	consensus_score=179.1	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4591	.	1	1974611	0	A	G	consensus_score=183.5	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4592	.	1	1974620	0	C	T	consensus_score=207.0	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	4593	.	1	1974629	0	C	T	bias_e_value=2109440	bias_p_value=0.999294	consensus_score=185.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962663	major_base=T	major_cov=40/32	major_frequency=9.863e-01	minor_base=G	minor_cov=1/0	new_cov=40/32	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	4594	.	1	1974636	0	C	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	4595	.	1	1974647	0	T	G	consensus_score=228.2	frequency=1	major_base=G	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4596	.	1	1974656	0	C	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	4597	.	1	1974710	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4598	.	1	1974719	0	G	A	consensus_score=243.8	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	4599	.	1	1974737	0	A	G	consensus_score=231.1	frequency=1	major_base=G	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4600	.	1	1974800	0	C	T	consensus_score=194.4	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	4601	.	1	1974815	0	C	T	consensus_score=186.0	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4602	.	1	1974839	0	G	A	consensus_score=188.4	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4603	.	1	1974875	0	A	G	consensus_score=163.5	frequency=1	major_base=G	major_cov=23/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/33
RA	4604	.	1	1974899	0	C	T	consensus_score=134.5	frequency=1	major_base=T	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4605	.	1	1974902	0	T	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4606	.	1	1974932	0	A	G	consensus_score=156.2	frequency=1	major_base=G	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4607	.	1	1974968	0	C	T	consensus_score=160.8	frequency=1	major_base=T	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4608	.	1	1974983	0	G	T	bias_e_value=1657640	bias_p_value=0.785262	consensus_score=163.2	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/23	major_frequency=9.825e-01	minor_base=C	minor_cov=0/1	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4609	.	1	1975047	1	.	A	consensus_score=145.3	frequency=1	major_base=A	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	4610	.	1	1975054	0	T	.	consensus_score=196.4	frequency=1	major_base=.	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4611	.	1	1975059	0	T	C	consensus_score=139.3	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4612	.	1	1975064	0	C	A	consensus_score=134.4	frequency=1	major_base=A	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4613	.	1	1975065	1	.	A	consensus_score=127.4	frequency=1	major_base=A	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	4614	.	1	1975080	0	A	G	consensus_score=113.9	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4615	.	1	1975082	0	C	G	consensus_score=115.2	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4616	.	1	1975083	0	G	A	consensus_score=111.0	frequency=1	major_base=A	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4617	.	1	1975105	1	.	C	consensus_score=101.7	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4618	.	1	1975106	0	T	G	consensus_score=104.7	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4619	.	1	1975108	0	A	G	consensus_score=105.4	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4620	.	1	1975112	0	G	A	consensus_score=105.8	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4621	.	1	1975148	0	A	.	bias_e_value=634613	bias_p_value=0.300631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.4	fisher_strand_p_value=0.467449	frequency=7.907e-01	ks_quality_p_value=0.187161	major_base=.	major_cov=17/17	major_frequency=7.907e-01	minor_base=A	minor_cov=3/6	new_cov=17/17	polymorphism_frequency=7.907e-01	polymorphism_score=32.4	prediction=polymorphism	ref_cov=3/6	total_cov=20/23
RA	4622	.	1	1975152	0	C	.	bias_e_value=31111.1	bias_p_value=0.0147381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.6	fisher_strand_p_value=0.467449	frequency=2.093e-01	ks_quality_p_value=0.00438507	major_base=C	major_cov=17/17	major_frequency=7.907e-01	minor_base=.	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.093e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=17/17	total_cov=20/23
RA	4623	.	1	1975168	0	C	G	consensus_score=83.8	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	4624	.	1	1975169	0	A	G	consensus_score=87.7	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	4625	.	1	1975170	0	C	T	bias_e_value=147098	bias_p_value=0.0696838	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.5	fisher_strand_p_value=0.484035	frequency=6.129e-01	ks_quality_p_value=0.0269658	major_base=T	major_cov=9/10	major_frequency=6.129e-01	minor_base=C	minor_cov=4/8	new_cov=9/10	polymorphism_frequency=6.129e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=4/8	total_cov=13/18
RA	4626	.	1	1975175	0	A	T	bias_e_value=262814	bias_p_value=0.124501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.0557694	major_base=A	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	4627	.	1	1975178	0	C	T	bias_e_value=690041	bias_p_value=0.326889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.203583	major_base=C	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	4628	.	1	1975179	0	G	A	bias_e_value=1194090	bias_p_value=0.56567	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.465082	frequency=4.000e-01	ks_quality_p_value=0.491098	major_base=G	major_cov=9/9	major_frequency=6.000e-01	minor_base=A	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=4.000e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=9/9	total_cov=13/17
RA	4629	.	1	1975190	0	C	T	bias_e_value=5.41718	bias_p_value=2.56625e-06	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	fisher_strand_p_value=0.716841	frequency=5.484e-01	ks_quality_p_value=2.14525e-07	major_base=T	major_cov=8/9	major_frequency=5.484e-01	minor_base=C	minor_cov=5/9	new_cov=8/9	polymorphism_frequency=5.484e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=5/9	total_cov=13/18
RA	4630	.	1	1975191	0	C	A	bias_e_value=946.266	bias_p_value=0.000448269	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.1	fisher_strand_p_value=0.716841	frequency=4.516e-01	ks_quality_p_value=5.62418e-05	major_base=C	major_cov=8/9	major_frequency=5.484e-01	minor_base=A	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=4.516e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=8/9	total_cov=13/18
RA	4631	.	1	1975198	0	G	A	consensus_score=35.1	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	4632	.	1	1975201	0	C	A	consensus_score=36.8	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	4633	.	1	1975228	0	C	T	consensus_score=43.7	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4634	.	1	1975231	0	A	C	consensus_score=43.9	frequency=1	major_base=C	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4635	.	1	1975243	0	C	T	consensus_score=42.5	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4636	.	1	1975255	0	T	C	consensus_score=54.6	frequency=1	major_base=C	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	4637	.	1	1975284	0	T	C	consensus_score=55.9	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4638	.	1	1975291	0	C	T	consensus_score=56.1	frequency=1	major_base=T	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4639	.	1	1975293	0	G	A	consensus_score=56.3	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4640	.	1	1975364	0	A	G	consensus_score=110.2	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	4641	.	1	1975382	0	G	A	consensus_score=127.4	frequency=1	major_base=A	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	4642	.	1	1975427	0	G	A	consensus_score=148.2	frequency=1	major_base=A	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	4643	.	1	1975433	0	T	C	consensus_score=153.6	frequency=1	major_base=C	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	4644	.	1	1975484	0	C	T	consensus_score=164.3	frequency=1	major_base=T	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	4645	.	1	1975550	0	C	T	consensus_score=167.5	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4646	.	1	1975556	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	4647	.	1	1975559	0	A	G	consensus_score=183.5	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	4648	.	1	1975586	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	4649	.	1	1975598	0	A	G	consensus_score=178.4	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4650	.	1	1975601	0	C	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4651	.	1	1975649	0	A	G	consensus_score=176.0	frequency=1	major_base=G	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4652	.	1	1975730	0	T	C	consensus_score=188.8	frequency=1	major_base=C	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4653	.	1	1975739	0	T	C	consensus_score=186.4	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4654	.	1	1975751	0	T	C	consensus_score=231.3	frequency=1	major_base=C	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	4655	.	1	1975760	0	A	G	consensus_score=206.1	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	4656	.	1	1975805	0	T	C	consensus_score=259.6	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	4657	.	1	1975916	0	G	A	consensus_score=271.3	frequency=1	major_base=A	major_cov=36/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/58
RA	4658	.	1	1975949	0	C	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	4659	.	1	1975982	0	C	T	consensus_score=234.3	frequency=1	major_base=T	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4660	.	1	1975997	0	T	C	consensus_score=228.8	frequency=1	major_base=C	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4661	.	1	1976057	0	C	T	consensus_score=181.0	frequency=1	major_base=T	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4662	.	1	1976071	0	G	A	consensus_score=183.2	frequency=1	major_base=A	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4663	.	1	1976075	0	T	C	consensus_score=189.4	frequency=1	major_base=C	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	4664	.	1	1976114	0	C	T	consensus_score=190.6	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4665	.	1	1976177	0	T	C	consensus_score=164.6	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	4666	.	1	1976198	0	T	C	consensus_score=158.7	frequency=1	major_base=C	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	4667	.	1	1976228	0	T	C	consensus_score=164.5	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4668	.	1	1976309	0	C	T	consensus_score=170.1	frequency=1	major_base=T	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	4669	.	1	1976428	0	G	C	consensus_score=180.1	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	4670	.	1	1976483	0	A	G	consensus_score=181.6	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4671	.	1	1976498	0	C	G	consensus_score=193.5	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4672	.	1	1976603	0	T	C	consensus_score=230.7	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4673	.	1	1976656	0	C	T	consensus_score=252.4	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4674	.	1	1976763	0	T	C	consensus_score=142.4	frequency=1	major_base=C	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	4675	.	1	1976795	0	G	T	consensus_score=171.1	frequency=1	major_base=T	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4676	.	1	1976803	0	A	G	consensus_score=177.5	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4677	.	1	1976827	0	C	T	consensus_score=183.9	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4678	.	1	1976872	0	A	G	consensus_score=226.7	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4679	.	1	1976923	0	A	G	consensus_score=206.3	frequency=1	major_base=G	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	4680	.	1	1976931	0	T	C	consensus_score=230.2	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4681	.	1	1976944	0	A	G	consensus_score=206.0	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4682	.	1	1977018	0	T	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4683	.	1	1977033	0	G	A	consensus_score=205.5	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	4684	.	1	1977058	0	A	G	consensus_score=204.2	frequency=1	major_base=G	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	4685	.	1	1977075	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4686	.	1	1977100	0	C	A	consensus_score=185.1	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	4687	.	1	1977142	0	T	G	consensus_score=169.0	frequency=1	major_base=G	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	4688	.	1	1977180	0	G	A	consensus_score=188.7	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	4689	.	1	1977246	0	A	G	consensus_score=193.9	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4690	.	1	1977256	0	G	T	consensus_score=193.3	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4691	.	1	1977268	0	C	T	consensus_score=192.8	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4692	.	1	1977289	0	C	T	consensus_score=220.8	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	4693	.	1	1977304	0	G	A	consensus_score=233.7	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	4694	.	1	1977349	0	G	A	consensus_score=206.3	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4695	.	1	1977370	0	C	T	consensus_score=195.2	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4696	.	1	1977431	0	T	C	consensus_score=205.6	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4697	.	1	1977499	0	G	A	consensus_score=207.0	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4698	.	1	1977559	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=199.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/30	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=36/30	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4699	.	1	1977562	0	A	G	consensus_score=194.6	frequency=1	major_base=G	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4700	.	1	1977622	0	A	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	4701	.	1	1977715	0	G	A	consensus_score=208.4	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	4702	.	1	1977742	0	C	A	consensus_score=227.5	frequency=1	major_base=A	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	4703	.	1	1977744	0	A	G	consensus_score=233.8	frequency=1	major_base=G	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	4704	.	1	1977760	0	T	C	consensus_score=217.6	frequency=1	major_base=C	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4705	.	1	1977775	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4706	.	1	1977778	0	A	G	consensus_score=219.3	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4707	.	1	1977794	0	A	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	4708	.	1	1977811	0	T	C	consensus_score=219.0	frequency=1	major_base=C	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	4709	.	1	1978036	0	T	A	consensus_score=224.3	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4710	.	1	1978039	0	A	G	consensus_score=218.6	frequency=1	major_base=G	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4711	.	1	1978120	0	C	T	consensus_score=237.4	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4712	.	1	1978189	0	A	G	consensus_score=232.3	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	4713	.	1	1978201	0	C	T	bias_e_value=1717960	bias_p_value=0.813841	consensus_score=226.3	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4714	.	1	1978212	0	A	G	consensus_score=227.2	frequency=1	major_base=G	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4715	.	1	1978234	0	A	G	consensus_score=222.0	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4716	.	1	1978246	0	A	C	consensus_score=219.5	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	4717	.	1	1978260	0	A	G	consensus_score=211.9	frequency=1	major_base=G	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4718	.	1	1978261	0	G	C	consensus_score=207.5	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4719	.	1	1978264	0	T	C	consensus_score=203.3	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4720	.	1	1978272	0	T	C	consensus_score=209.5	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4721	.	1	1978312	0	T	C	consensus_score=211.3	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	4722	.	1	1978344	0	G	A	consensus_score=183.0	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4723	.	1	1978348	0	T	C	consensus_score=186.8	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4724	.	1	1978375	0	T	C	consensus_score=176.1	frequency=1	major_base=C	major_cov=38/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/22
RA	4725	.	1	1978453	0	G	A	consensus_score=180.3	frequency=1	major_base=A	major_cov=45/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/19
RA	4726	.	1	1978474	0	G	A	consensus_score=189.0	frequency=1	major_base=A	major_cov=50/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/17
RA	4727	.	1	1978513	0	T	C	consensus_score=155.0	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4728	.	1	1978518	0	T	C	consensus_score=160.8	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4729	.	1	1978585	0	A	C	consensus_score=159.8	frequency=1	major_base=C	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4730	.	1	1978630	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=143.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=22/25	major_frequency=9.792e-01	minor_base=A	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4731	.	1	1978645	0	T	G	consensus_score=124.9	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4732	.	1	1978670	0	G	A	consensus_score=115.4	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	4733	.	1	1978690	0	C	T	consensus_score=121.0	frequency=1	major_base=T	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	4734	.	1	1978696	0	G	A	consensus_score=122.5	frequency=1	major_base=A	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	4735	.	1	1978701	0	C	T	consensus_score=128.2	frequency=1	major_base=T	major_cov=18/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	4736	.	1	1978713	0	C	T	consensus_score=124.0	frequency=1	major_base=T	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	4737	.	1	1978723	0	C	T	consensus_score=120.3	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	4738	.	1	1978739	0	T	C	consensus_score=134.9	frequency=1	major_base=C	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	4739	.	1	1978810	0	C	A	consensus_score=122.1	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	4740	.	1	1978861	0	G	A	consensus_score=153.3	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4741	.	1	1978917	0	G	A	consensus_score=181.7	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4742	.	1	1978922	0	C	T	consensus_score=183.9	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4743	.	1	1979070	0	A	C	consensus_score=246.2	frequency=1	major_base=C	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	4744	.	1	1979172	0	T	C	consensus_score=215.9	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4745	.	1	1979205	0	G	A	consensus_score=213.6	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4746	.	1	1979214	0	C	T	consensus_score=217.4	frequency=1	major_base=T	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4747	.	1	1979222	0	A	G	consensus_score=227.1	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4748	.	1	1979393	0	C	T	consensus_score=187.4	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4749	.	1	1979397	0	T	C	consensus_score=180.8	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4750	.	1	1979400	0	T	C	consensus_score=177.2	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4751	.	1	1979406	0	T	C	consensus_score=181.0	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4752	.	1	1979419	0	C	T	consensus_score=171.3	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	4753	.	1	1979487	0	C	T	consensus_score=166.0	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4754	.	1	1979499	0	A	C	consensus_score=169.0	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	4755	.	1	1979508	0	A	G	consensus_score=180.0	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4756	.	1	1979568	0	C	G	consensus_score=184.0	frequency=1	major_base=G	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4757	.	1	1979577	0	T	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4758	.	1	1979622	0	G	A	consensus_score=181.8	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4759	.	1	1979628	0	G	A	consensus_score=177.1	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4760	.	1	1979633	0	C	T	consensus_score=187.2	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4761	.	1	1979637	0	A	G	consensus_score=178.9	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4762	.	1	1979640	0	G	A	consensus_score=191.2	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4763	.	1	1979646	0	T	C	consensus_score=188.8	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4764	.	1	1979649	0	A	G	consensus_score=192.0	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4765	.	1	1979670	0	C	T	consensus_score=172.6	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4766	.	1	1979673	0	C	T	consensus_score=171.4	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4767	.	1	1979691	0	A	G	consensus_score=161.7	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	4768	.	1	1979715	0	G	C	consensus_score=147.4	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4769	.	1	1979718	0	T	C	consensus_score=150.0	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4770	.	1	1979721	0	C	T	consensus_score=151.0	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4771	.	1	1979727	0	G	A	consensus_score=143.5	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	4772	.	1	1979742	0	T	A	consensus_score=131.4	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	4773	.	1	1979751	0	A	T	consensus_score=137.3	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4774	.	1	1979763	0	G	A	consensus_score=116.0	frequency=1	major_base=A	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	4775	.	1	1979784	0	A	G	consensus_score=122.7	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4776	.	1	1979787	0	G	A	consensus_score=122.0	frequency=1	major_base=A	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4777	.	1	1979790	0	A	G	consensus_score=119.1	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4778	.	1	1979796	0	A	G	consensus_score=117.1	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	4779	.	1	1979805	0	G	A	consensus_score=80.4	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4780	.	1	1979808	0	C	T	consensus_score=77.1	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4781	.	1	1979811	0	A	G	consensus_score=80.3	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4782	.	1	1979814	0	A	G	consensus_score=82.9	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4783	.	1	1979817	0	A	G	consensus_score=83.8	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4784	.	1	1979822	0	G	T	consensus_score=79.2	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4785	.	1	1979823	0	G	T	consensus_score=85.5	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4786	.	1	1979826	0	G	T	consensus_score=76.8	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4787	.	1	1979832	0	A	G	consensus_score=84.8	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4788	.	1	1979835	0	T	C	consensus_score=87.5	frequency=1	major_base=C	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4789	.	1	1979838	0	G	A	consensus_score=80.1	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4790	.	1	1979844	0	C	A	consensus_score=102.2	frequency=1	major_base=A	major_cov=9/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/28
RA	4791	.	1	1979853	0	G	T	consensus_score=105.9	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4792	.	1	1979859	0	C	T	consensus_score=116.8	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4793	.	1	1979862	0	A	G	consensus_score=110.3	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4794	.	1	1979865	0	A	G	consensus_score=112.7	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4795	.	1	1979871	0	G	A	consensus_score=108.9	frequency=1	major_base=A	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4796	.	1	1979891	0	A	C	consensus_score=142.8	frequency=1	major_base=C	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	4797	.	1	1979898	0	G	A	consensus_score=143.9	frequency=1	major_base=A	major_cov=17/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/34
RA	4798	.	1	1979929	0	T	C	consensus_score=149.4	frequency=1	major_base=C	major_cov=16/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/33
RA	4799	.	1	1979943	0	T	A	consensus_score=127.7	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4800	.	1	1979945	0	T	G	consensus_score=130.9	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4801	.	1	1979949	0	A	C	consensus_score=126.1	frequency=1	major_base=C	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4802	.	1	1979954	0	G	A	consensus_score=132.3	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4803	.	1	1979956	0	G	T	consensus_score=122.7	frequency=1	major_base=T	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4804	.	1	1979958	0	G	A	consensus_score=125.4	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4805	.	1	1980457	0	G	C	consensus_score=127.3	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	4806	.	1	1982403	0	G	A	consensus_score=204.9	frequency=1	major_base=A	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4807	.	1	1982724	0	T	G	consensus_score=47.5	deleted=1	frequency=1	major_base=G	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	4808	.	1	1983081	0	G	A	consensus_score=165.0	frequency=1	major_base=A	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	4809	.	1	1984693	0	C	G	bias_e_value=749569	bias_p_value=0.355089	consensus_score=151.3	fisher_strand_p_value=0.111039	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/17	major_frequency=9.643e-01	minor_base=C	minor_cov=0/2	new_cov=37/17	polymorphism_frequency=9.643e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/2	total_cov=37/19
RA	4810	.	1	1984978	0	G	A	consensus_score=184.7	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4811	.	1	1985088	0	G	T	consensus_score=162.5	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4812	.	1	1985161	0	C	A	bias_e_value=1657150	bias_p_value=0.785034	consensus_score=166.5	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.999374	major_base=A	major_cov=23/33	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=23/33	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/33
RA	4813	.	1	1985375	0	T	C	consensus_score=184.0	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	4814	.	1	1985544	0	G	A	consensus_score=197.8	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	4815	.	1	1985730	1	.	T	consensus_score=228.5	frequency=1	major_base=T	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4816	.	1	1985960	0	A	G	consensus_score=232.1	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4817	.	1	1986009	0	T	C	consensus_score=195.2	frequency=1	major_base=C	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4818	.	1	1986021	0	G	T	consensus_score=198.2	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4819	.	1	1986045	0	T	C	consensus_score=179.2	frequency=1	major_base=C	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	4820	.	1	1986078	0	C	T	consensus_score=200.9	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	4821	.	1	1986112	0	T	C	consensus_score=195.6	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	4822	.	1	1986168	0	T	C	consensus_score=200.2	frequency=1	major_base=C	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	4823	.	1	1986201	0	G	A	consensus_score=187.5	frequency=1	major_base=A	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	4824	.	1	1986312	0	C	T	consensus_score=212.4	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4825	.	1	1986314	0	T	C	consensus_score=209.2	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4826	.	1	1986325	0	A	T	consensus_score=223.0	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	4827	.	1	1986489	0	T	G	bias_e_value=1.42771e-05	bias_p_value=6.7634e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.6	fisher_strand_p_value=2.24512e-13	frequency=3.210e-01	ks_quality_p_value=1	major_base=T	major_cov=10/45	major_frequency=6.790e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.210e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=10/45	total_cov=36/45
RA	4828	.	1	1986499	0	A	G	bias_e_value=574427	bias_p_value=0.27212	consensus_score=198.6	fisher_strand_p_value=0.083685	frequency=1	ks_quality_p_value=0.909403	major_base=G	major_cov=33/45	major_frequency=9.630e-01	minor_base=C	minor_cov=3/0	new_cov=33/45	polymorphism_frequency=9.630e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4829	.	1	1986508	0	C	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	4830	.	1	1986532	0	A	G	consensus_score=217.5	frequency=1	major_base=G	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	4831	.	1	1986559	0	A	G	bias_e_value=1718270	bias_p_value=0.813987	consensus_score=173.7	fisher_strand_p_value=0.455882	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/37	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=30/37	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/37
RA	4832	.	1	1986574	0	T	C	consensus_score=180.3	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4833	.	1	1986577	0	T	G	consensus_score=179.3	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4834	.	1	1986580	0	C	T	bias_e_value=396142	bias_p_value=0.187662	consensus_score=149.2	fisher_strand_p_value=0.0460074	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/33	major_frequency=9.365e-01	minor_base=C	minor_cov=4/0	new_cov=26/33	polymorphism_frequency=9.365e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=4/0	total_cov=30/33
RA	4835	.	1	1986583	0	T	C	consensus_score=166.6	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4836	.	1	1986585	0	G	A	bias_e_value=1751010	bias_p_value=0.829494	consensus_score=177.3	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/33	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/33
RA	4837	.	1	1986631	0	A	G	consensus_score=200.7	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	4838	.	1	1986640	0	T	C	consensus_score=221.8	frequency=1	major_base=C	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	4839	.	1	1986671	0	C	T	consensus_score=192.3	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	4840	.	1	1986688	0	G	A	bias_e_value=1710400	bias_p_value=0.810259	consensus_score=180.3	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.992569	major_base=A	major_cov=36/29	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=36/29	polymorphism_frequency=9.848e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=37/30
RA	4841	.	1	1986694	0	T	C	bias_e_value=1645720	bias_p_value=0.779619	consensus_score=182.6	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.998079	major_base=C	major_cov=38/26	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	4842	.	1	1986697	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=179.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/26	major_frequency=9.538e-01	minor_base=C	minor_cov=2/1	new_cov=36/26	polymorphism_frequency=9.538e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=38/27
RA	4843	.	1	1986722	0	C	T	consensus_score=192.4	frequency=1	major_base=T	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4844	.	1	1986727	0	T	C	bias_e_value=1599820	bias_p_value=0.757874	consensus_score=181.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.976718	major_base=C	major_cov=39/25	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=39/25	polymorphism_frequency=9.846e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=39/26
RA	4845	.	1	1986775	0	T	C	bias_e_value=1617740	bias_p_value=0.766365	consensus_score=199.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.999586	major_base=C	major_cov=42/27	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=42/27	polymorphism_frequency=9.857e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=42/28
RA	4846	.	1	1986825	0	T	G	bias_e_value=1507070	bias_p_value=0.713936	consensus_score=200.4	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.998436	major_base=G	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4847	.	1	1986829	0	T	C	bias_e_value=1503430	bias_p_value=0.712212	consensus_score=202.7	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.99376	major_base=C	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4848	.	1	1986831	0	G	A	bias_e_value=1430950	bias_p_value=0.677877	consensus_score=209.1	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.904696	major_base=A	major_cov=47/24	major_frequency=9.861e-01	minor_base=G	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4849	.	1	1986886	0	C	T	bias_e_value=1612750	bias_p_value=0.763997	consensus_score=204.6	fisher_strand_p_value=0.39726	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/28	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=44/28	polymorphism_frequency=9.863e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=44/29
RA	4850	.	1	1986910	0	G	A	bias_e_value=1459740	bias_p_value=0.691514	consensus_score=205.9	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=0.951131	major_base=A	major_cov=46/23	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=46/23	polymorphism_frequency=9.857e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=46/24
RA	4851	.	1	1986973	0	G	A	consensus_score=161.8	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	4852	.	1	1986976	0	G	A	consensus_score=155.8	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	4853	.	1	1986997	0	C	T	consensus_score=151.2	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4854	.	1	1987003	0	C	T	consensus_score=156.2	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4855	.	1	1987009	0	C	T	consensus_score=161.6	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4856	.	1	1987018	0	G	A	consensus_score=161.5	frequency=1	major_base=A	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4857	.	1	1987144	0	A	G	consensus_score=156.5	frequency=1	major_base=G	major_cov=20/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/35
RA	4858	.	1	1987152	0	T	G	consensus_score=153.1	frequency=1	major_base=G	major_cov=19/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/35
RA	4859	.	1	1987159	0	A	G	consensus_score=162.2	frequency=1	major_base=G	major_cov=20/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/36
RA	4860	.	1	1987201	0	A	G	consensus_score=169.9	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4861	.	1	1987228	0	G	A	consensus_score=168.1	frequency=1	major_base=A	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	4862	.	1	1987232	0	G	A	consensus_score=156.0	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4863	.	1	1987235	0	G	A	bias_e_value=1792530	bias_p_value=0.849165	consensus_score=152.4	fisher_strand_p_value=0.503759	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/31	major_frequency=9.649e-01	minor_base=C	minor_cov=0/2	new_cov=24/31	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4864	.	1	1987241	0	C	G	consensus_score=172.0	frequency=1	major_base=G	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	4865	.	1	1987252	0	G	A	consensus_score=166.5	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	4866	.	1	1987385	0	A	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	4867	.	1	1987491	0	T	C	consensus_score=229.8	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4868	.	1	1987501	0	A	G	consensus_score=224.3	frequency=1	major_base=G	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4869	.	1	1987553	0	A	G	consensus_score=179.3	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4870	.	1	1987554	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4871	.	1	1987555	0	A	G	consensus_score=185.4	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4872	.	1	1987561	0	T	C	consensus_score=202.4	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4873	.	1	1987571	0	A	G	consensus_score=205.8	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4874	.	1	1987572	0	G	C	consensus_score=209.3	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4875	.	1	1987678	0	T	C	consensus_score=213.7	frequency=1	major_base=C	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4876	.	1	1987898	0	G	A	consensus_score=228.7	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4877	.	1	1987918	0	G	A	bias_e_value=2110930	bias_p_value=1	consensus_score=223.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/42	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=36/42	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/43
RA	4878	.	1	1987937	0	A	G	consensus_score=236.6	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4879	.	1	1987946	0	C	T	consensus_score=221.7	frequency=1	major_base=T	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4880	.	1	1987984	0	T	C	consensus_score=240.2	frequency=1	major_base=C	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	4881	.	1	1987990	0	C	T	consensus_score=226.5	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	4882	.	1	1987999	0	G	A	consensus_score=245.3	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4883	.	1	1988036	0	G	T	consensus_score=209.0	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	4884	.	1	1988048	0	C	A	consensus_score=188.2	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4885	.	1	1988050	0	G	A	consensus_score=180.7	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4886	.	1	1988056	0	A	G	bias_e_value=2110930	bias_p_value=0.999996	consensus_score=151.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99731	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4887	.	1	1988057	0	T	C	bias_e_value=2110930	bias_p_value=1	consensus_score=145.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4888	.	1	1988058	0	T	G	bias_e_value=2110930	bias_p_value=1	consensus_score=151.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999327	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4889	.	1	1988062	0	G	A	bias_e_value=2075790	bias_p_value=0.983349	consensus_score=148.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.823153	major_base=A	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	4890	.	1	1988063	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=149.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	4891	.	1	1988074	0	C	T	consensus_score=164.8	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4892	.	1	1988082	0	G	C	consensus_score=172.8	frequency=1	major_base=C	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	4893	.	1	1988095	0	A	G	consensus_score=164.9	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4894	.	1	1988098	0	A	G	consensus_score=165.0	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4895	.	1	1988111	0	A	G	bias_e_value=1726440	bias_p_value=0.817854	consensus_score=166.0	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.967761	major_base=G	major_cov=33/29	major_frequency=9.841e-01	minor_base=A	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/30
RA	4896	.	1	1988117	0	C	T	consensus_score=177.6	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4897	.	1	1988160	0	A	T	consensus_score=152.3	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4898	.	1	1988161	0	A	G	consensus_score=154.9	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4899	.	1	1988164	0	G	A	consensus_score=145.9	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4900	.	1	1988191	0	G	A	consensus_score=159.9	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4901	.	1	1988222	0	C	G	consensus_score=175.3	frequency=1	major_base=G	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4902	.	1	1988304	0	C	T	consensus_score=183.9	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4903	.	1	1988370	0	T	G	consensus_score=171.5	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4904	.	1	1988408	0	T	C	consensus_score=171.2	frequency=1	major_base=C	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4905	.	1	1988447	0	T	C	consensus_score=197.3	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4906	.	1	1988474	0	A	G	consensus_score=207.4	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	4907	.	1	1988507	0	C	T	consensus_score=198.1	frequency=1	major_base=T	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	4908	.	1	1988508	0	C	A	consensus_score=196.1	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	4909	.	1	1988556	0	C	T	consensus_score=217.3	frequency=1	major_base=T	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	4910	.	1	1988559	0	T	C	consensus_score=229.6	frequency=1	major_base=C	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	4911	.	1	1988655	0	C	T	consensus_score=227.4	frequency=1	major_base=T	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4912	.	1	1988676	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4913	.	1	1988694	0	A	G	consensus_score=193.0	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4914	.	1	1988750	0	G	A	consensus_score=158.3	frequency=1	major_base=A	major_cov=33/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	4915	.	1	1988754	0	A	T	consensus_score=154.1	frequency=1	major_base=T	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	4916	.	1	1988791	0	G	A	consensus_score=181.0	frequency=1	major_base=A	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	4917	.	1	1988807	0	C	A	consensus_score=171.2	frequency=1	major_base=A	major_cov=39/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/21
RA	4918	.	1	1988847	0	C	A	consensus_score=184.7	frequency=1	major_base=A	major_cov=39/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/22
RA	4919	.	1	1988856	0	G	A	consensus_score=162.7	frequency=1	major_base=A	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	4920	.	1	1988970	0	C	T	consensus_score=163.1	frequency=1	major_base=T	major_cov=33/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/25
RA	4921	.	1	1988976	0	C	T	consensus_score=153.8	frequency=1	major_base=T	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4922	.	1	1988978	0	C	A	consensus_score=157.3	frequency=1	major_base=A	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4923	.	1	1989036	0	G	A	consensus_score=181.8	frequency=1	major_base=A	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4924	.	1	1989138	0	A	G	consensus_score=201.5	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4925	.	1	1989144	0	A	T	consensus_score=187.5	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4926	.	1	1989146	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4927	.	1	1989164	0	T	C	consensus_score=211.5	frequency=1	major_base=C	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	4928	.	1	1989202	0	A	G	consensus_score=234.5	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	4929	.	1	1989222	0	T	C	consensus_score=221.9	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	4930	.	1	1989257	0	A	G	consensus_score=211.2	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	4931	.	1	1989279	0	A	G	consensus_score=226.2	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4932	.	1	1989289	0	A	G	consensus_score=213.3	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4933	.	1	1989291	0	G	C	consensus_score=204.0	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4934	.	1	1989341	0	A	C	consensus_score=235.7	frequency=1	major_base=C	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	4935	.	1	1989354	0	C	T	bias_e_value=1653150	bias_p_value=0.783137	consensus_score=255.4	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/35	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=50/35	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/36
RA	4936	.	1	1989383	0	G	A	consensus_score=233.0	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	4937	.	1	1989414	0	C	T	consensus_score=223.8	frequency=1	major_base=T	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4938	.	1	1989429	0	A	G	consensus_score=199.5	frequency=1	major_base=G	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4939	.	1	1989432	0	A	G	bias_e_value=2110930	bias_p_value=1	consensus_score=198.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/30	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=39/30	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4940	.	1	1989438	0	A	T	consensus_score=210.1	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4941	.	1	1989510	0	G	A	consensus_score=178.1	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	4942	.	1	1989534	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4943	.	1	1989537	0	G	A	consensus_score=191.2	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4944	.	1	1989576	0	G	A	consensus_score=194.2	frequency=1	major_base=A	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4945	.	1	1989615	0	C	T	consensus_score=202.4	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4946	.	1	1989619	0	T	C	consensus_score=211.1	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4947	.	1	1989630	0	G	A	consensus_score=213.0	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	4948	.	1	1989644	0	A	G	consensus_score=210.8	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4949	.	1	1989681	0	A	G	consensus_score=189.8	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4950	.	1	1989684	0	A	G	consensus_score=192.5	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4951	.	1	1989687	0	G	A	consensus_score=190.2	frequency=1	major_base=A	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4952	.	1	1989711	0	A	G	consensus_score=187.5	frequency=1	major_base=G	major_cov=18/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/46
RA	4953	.	1	1989723	0	C	T	consensus_score=187.4	frequency=1	major_base=T	major_cov=20/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/45
RA	4954	.	1	1989751	0	C	T	consensus_score=172.1	frequency=1	major_base=T	major_cov=18/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/43
RA	4955	.	1	1989786	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	4956	.	1	1989787	0	C	T	consensus_score=170.0	frequency=1	major_base=T	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	4957	.	1	1989792	0	T	C	consensus_score=187.1	frequency=1	major_base=C	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	4958	.	1	1989833	0	A	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4959	.	1	1989836	0	A	C	consensus_score=206.0	frequency=1	major_base=C	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4960	.	1	1989839	0	C	A	consensus_score=215.4	frequency=1	major_base=A	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4961	.	1	1989887	0	C	T	consensus_score=199.4	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4962	.	1	1989898	0	T	C	consensus_score=188.6	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	4963	.	1	1989918	0	G	A	consensus_score=184.5	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4964	.	1	1989921	0	G	A	consensus_score=185.9	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4965	.	1	1989930	0	C	T	consensus_score=193.3	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4966	.	1	1989954	0	T	C	bias_e_value=2088360	bias_p_value=0.989308	consensus_score=188.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.857376	major_base=C	major_cov=34/34	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=34/34	polymorphism_frequency=9.855e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4967	.	1	1989960	0	T	C	consensus_score=194.4	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4968	.	1	1989969	0	C	T	consensus_score=191.6	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4969	.	1	1989972	0	A	G	consensus_score=195.4	frequency=1	major_base=G	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4970	.	1	1989999	0	A	G	consensus_score=214.6	frequency=1	major_base=G	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4971	.	1	1990002	0	C	T	consensus_score=206.1	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4972	.	1	1990023	0	G	A	consensus_score=205.3	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4973	.	1	1990035	0	A	G	consensus_score=210.9	frequency=1	major_base=G	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4974	.	1	1990041	0	T	C	consensus_score=200.9	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4975	.	1	1990059	0	G	C	bias_e_value=2110930	bias_p_value=1	consensus_score=177.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/32	major_frequency=9.841e-01	minor_base=T	minor_cov=0/1	new_cov=30/32	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4976	.	1	1990062	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4977	.	1	1990089	0	C	T	consensus_score=213.3	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4978	.	1	1990092	0	A	G	consensus_score=203.3	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4979	.	1	1990140	0	A	G	consensus_score=248.6	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4980	.	1	1990221	0	G	T	consensus_score=238.1	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	4981	.	1	1990278	0	A	G	consensus_score=195.1	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4982	.	1	1990350	0	C	T	consensus_score=186.1	frequency=1	major_base=T	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4983	.	1	1990353	0	G	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4984	.	1	1990365	0	G	C	consensus_score=182.6	frequency=1	major_base=C	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	4985	.	1	1990368	0	C	T	consensus_score=182.9	frequency=1	major_base=T	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	4986	.	1	1990422	0	A	.	consensus_score=296.2	frequency=1	major_base=.	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	4987	.	1	1990425	0	A	G	consensus_score=205.2	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	4988	.	1	1990428	1	.	T	bias_e_value=2110930	bias_p_value=0.999999	consensus_score=197.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998345	major_base=T	major_cov=28/41	major_frequency=9.857e-01	minor_base=.	minor_cov=0/1	new_cov=28/41	polymorphism_frequency=9.857e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=28/42
RA	4989	.	1	1990436	0	G	A	consensus_score=201.3	frequency=1	major_base=A	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4990	.	1	1990443	0	C	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4991	.	1	1990500	0	A	G	consensus_score=252.1	frequency=1	major_base=G	major_cov=31/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/52
RA	4992	.	1	1990541	0	T	A	consensus_score=237.6	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	4993	.	1	1990545	0	G	A	consensus_score=242.3	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	4994	.	1	1990551	0	T	A	bias_e_value=988756	bias_p_value=0.468397	consensus_score=222.4	fisher_strand_p_value=0.168404	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/51	major_frequency=9.770e-01	minor_base=G	minor_cov=2/0	new_cov=34/51	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	4995	.	1	1990569	0	A	G	consensus_score=242.5	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4996	.	1	1990578	0	C	T	consensus_score=236.8	frequency=1	major_base=T	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4997	.	1	1990600	0	A	G	consensus_score=211.3	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4998	.	1	1990617	0	G	A	consensus_score=199.0	frequency=1	major_base=A	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4999	.	1	1990623	0	G	A	consensus_score=202.2	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	5000	.	1	1993597	1	.	T	consensus_score=110.6	frequency=1	major_base=T	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5001	.	1	1994062	0	A	G	consensus_score=221.8	frequency=1	major_base=G	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	5002	.	1	1995102	0	T	C	consensus_score=171.1	frequency=1	major_base=C	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	5003	.	1	1995750	0	G	A	consensus_score=249.2	frequency=1	major_base=A	major_cov=28/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/56
RA	5004	.	1	1996401	0	G	A	bias_e_value=1404500	bias_p_value=0.665345	consensus_score=240.4	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=0.77246	major_base=A	major_cov=32/51	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=32/51	polymorphism_frequency=9.881e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=33/51
RA	5005	.	1	1999460	0	T	A	consensus_score=216.2	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	5006	.	1	1999649	0	C	T	consensus_score=236.0	frequency=1	major_base=T	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	5007	.	1	2002092	0	T	C	consensus_score=191.3	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5008	.	1	2003266	0	C	T	consensus_score=159.3	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	5009	.	1	2005051	0	T	C	consensus_score=233.9	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	5010	.	1	2008726	0	G	A	consensus_score=235.5	frequency=1	major_base=A	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	5011	.	1	2009063	0	C	A	consensus_score=184.6	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5012	.	1	2011669	0	T	C	consensus_score=294.9	frequency=1	major_base=C	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	5013	.	1	2011719	0	T	C	consensus_score=267.2	frequency=1	major_base=C	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	5014	.	1	2013193	0	A	G	consensus_score=191.1	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	5015	.	1	2017439	0	T	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	5016	.	1	2017586	0	A	G	consensus_score=279.1	frequency=1	major_base=G	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	5017	.	1	2017652	0	A	G	consensus_score=253.1	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	5018	.	1	2018525	0	A	G	consensus_score=220.2	frequency=1	major_base=G	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	5019	.	1	2019116	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	5020	.	1	2021404	0	A	C	bias_e_value=1259330	bias_p_value=0.596574	consensus_score=120.0	fisher_strand_p_value=0.25	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/10	major_frequency=9.773e-01	minor_base=.	minor_cov=0/1	new_cov=33/10	polymorphism_frequency=9.773e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=33/11
RA	5021	.	1	2022889	0	C	T	bias_e_value=2110930	bias_p_value=1	consensus_score=235.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=48/33	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=48/33	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/33
RA	5022	.	1	2023551	0	A	G	consensus_score=234.1	frequency=1	major_base=G	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5023	.	1	2024385	0	A	G	consensus_score=208.2	frequency=1	major_base=G	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	5024	.	1	2025262	0	A	G	bias_e_value=1416380	bias_p_value=0.670973	consensus_score=262.4	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.630769	major_base=G	major_cov=45/42	major_frequency=9.886e-01	minor_base=A	minor_cov=0/1	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=45/43
RA	5025	.	1	2026259	0	A	G	consensus_score=236.7	frequency=1	major_base=G	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	5026	.	1	2026981	0	A	G	consensus_score=316.3	frequency=1	major_base=G	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	5027	.	1	2027397	0	G	A	consensus_score=228.5	frequency=1	major_base=A	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	5028	.	1	2029006	0	T	C	consensus_score=287.8	frequency=1	major_base=C	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	5029	.	1	2029108	0	C	A	bias_e_value=0.000200256	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.7	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	5030	.	1	2031609	0	A	G	consensus_score=214.4	frequency=1	major_base=G	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	5031	.	1	2031899	0	A	T	consensus_score=255.0	frequency=1	major_base=T	major_cov=37/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/52
RA	5032	.	1	2033808	0	C	T	consensus_score=186.1	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	5033	.	1	2034059	0	C	G	bias_e_value=0.000280424	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.7	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	5034	.	1	2038225	0	A	G	consensus_score=91.6	frequency=1	major_base=G	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	5035	.	1	2038365	0	G	A	consensus_score=88.7	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	5036	.	1	2038596	0	A	G	consensus_score=176.6	frequency=1	major_base=G	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	5037	.	1	2038705	0	T	A	bias_e_value=1.35419	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.3	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	5038	.	1	2038989	0	C	T	consensus_score=245.5	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	5039	.	1	2040742	0	G	A	consensus_score=119.3	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	5040	.	1	2041026	0	A	G	consensus_score=125.3	frequency=1	major_base=G	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	5041	.	1	2046520	0	G	A	consensus_score=228.2	frequency=1	major_base=A	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	5042	.	1	2046952	0	A	G	bias_e_value=1541360	bias_p_value=0.730181	consensus_score=317.2	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.785078	major_base=G	major_cov=56/47	major_frequency=9.904e-01	minor_base=.	minor_cov=0/1	new_cov=56/47	polymorphism_frequency=9.904e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	5043	.	1	2047408	0	G	A	consensus_score=285.8	frequency=1	major_base=A	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	5044	.	1	2047657	0	T	C	consensus_score=179.6	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5045	.	1	2048407	0	A	G	consensus_score=264.6	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	5046	.	1	2048943	1	.	T	bias_e_value=1858900	bias_p_value=0.880604	consensus_score=216.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.553013	major_base=T	major_cov=38/35	major_frequency=9.865e-01	minor_base=.	minor_cov=1/0	new_cov=38/35	polymorphism_frequency=9.865e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=39/35
RA	5047	.	1	2049717	0	A	G	consensus_score=216.8	frequency=1	major_base=G	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	5048	.	1	2050174	0	T	A	consensus_score=14.8	deleted=1	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	5049	.	1	2054639	0	A	G	consensus_score=203.6	frequency=1	major_base=G	major_cov=28/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/41
RA	5050	.	1	2055756	0	C	A	consensus_score=234.2	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	5051	.	1	2056174	0	C	T	consensus_score=154.4	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	5052	.	1	2057114	0	C	A	consensus_score=196.1	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	5053	.	1	2058578	0	G	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	5054	.	1	2059057	0	T	C	consensus_score=197.0	frequency=1	major_base=C	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	5055	.	1	2062549	0	G	A	consensus_score=213.7	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5056	.	1	2062721	0	G	A	consensus_score=209.8	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	5057	.	1	2063156	0	A	C	consensus_score=265.1	frequency=1	major_base=C	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	5058	.	1	2063992	0	T	C	consensus_score=219.4	frequency=1	major_base=C	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	5059	.	1	2064093	0	T	C	consensus_score=244.6	frequency=1	major_base=C	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	5060	.	1	2064218	0	C	T	consensus_score=216.6	frequency=1	major_base=T	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5061	.	1	2065319	0	G	A	consensus_score=248.4	frequency=1	major_base=A	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	5062	.	1	2066318	0	A	G	consensus_score=234.0	frequency=1	major_base=G	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	5063	.	1	2066401	0	A	G	consensus_score=234.3	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	5064	.	1	2067537	0	G	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=25/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/46
RA	5065	.	1	2067726	0	A	G	consensus_score=168.7	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	5066	.	1	2068105	0	G	A	consensus_score=282.1	frequency=1	major_base=A	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	5067	.	1	2069933	0	C	T	consensus_score=246.7	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	5068	.	1	2072255	0	A	G	consensus_score=181.9	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5069	.	1	2075827	0	C	A	bias_e_value=0.298654	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.6	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	5070	.	1	2075843	0	C	A	bias_e_value=0.05543	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.7	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	5071	.	1	2076599	0	G	A	consensus_score=244.8	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	5072	.	1	2079321	0	T	C	consensus_score=205.4	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	5073	.	1	2079462	0	T	C	consensus_score=295.7	frequency=1	major_base=C	major_cov=36/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/61
RA	5074	.	1	2080118	0	T	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	5075	.	1	2080682	0	T	C	consensus_score=264.6	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	5076	.	1	2082316	0	A	G	consensus_score=299.7	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	5077	.	1	2082883	0	T	G	consensus_score=361.7	frequency=1	major_base=G	major_cov=57/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/65
RA	5078	.	1	2084325	0	T	G	consensus_score=317.6	frequency=1	major_base=G	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	5079	.	1	2085679	0	T	C	consensus_score=270.2	frequency=1	major_base=C	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	5080	.	1	2086604	0	T	C	consensus_score=160.9	frequency=1	major_base=C	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	5081	.	1	2086743	0	G	A	consensus_score=287.5	frequency=1	major_base=A	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	5082	.	1	2086920	0	T	C	consensus_score=258.5	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	5083	.	1	2087115	0	T	G	consensus_score=169.6	frequency=1	major_base=G	major_cov=14/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/43
RA	5084	.	1	2087385	0	T	C	consensus_score=227.5	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	5085	.	1	2088730	0	C	T	consensus_score=219.9	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5086	.	1	2089505	0	C	T	consensus_score=313.6	frequency=1	major_base=T	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	5087	.	1	2089660	0	G	T	consensus_score=276.8	frequency=1	major_base=T	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	5088	.	1	2092599	0	A	G	consensus_score=199.1	frequency=1	major_base=G	major_cov=45/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/25
RA	5089	.	1	2093602	0	C	A	consensus_score=202.8	frequency=1	major_base=A	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	5090	.	1	2094293	0	T	A	bias_e_value=32.2427	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.0	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	5091	.	1	2096722	0	C	A	consensus_score=227.3	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	5092	.	1	2096998	0	G	A	bias_e_value=0.000112049	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.7	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	5093	.	1	2097003	0	A	C	bias_e_value=3.35182e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	5094	.	1	2097023	0	A	C	bias_e_value=9.45016e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	5095	.	1	2100437	0	G	A	consensus_score=235.0	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	5096	.	1	2100749	0	T	C	consensus_score=178.9	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	5097	.	1	2106131	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	5098	.	1	2109440	0	G	T	consensus_score=315.6	frequency=1	major_base=T	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	5099	.	1	2109843	0	T	C	consensus_score=186.0	frequency=1	major_base=C	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
MC	5100	.	1	8330	31473	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=20	right_outside_cov=25
MC	5101	.	1	148810	149664	0	75	left_inside_cov=0	left_outside_cov=80	right_inside_cov=23	right_outside_cov=26
MC	5102	.	1	150540	152195	56	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=0	right_outside_cov=80
MC	5103	.	1	313251	313269	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=85
MC	5104	.	1	370056	370182	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=21	right_outside_cov=27
MC	5105	.	1	406631	407023	0	0	left_inside_cov=0	left_outside_cov=121	right_inside_cov=0	right_outside_cov=121
MC	5106	.	1	426154	426224	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=0	right_outside_cov=24
MC	5107	.	1	428693	428708	0	0	left_inside_cov=23	left_outside_cov=29	right_inside_cov=0	right_outside_cov=130
MC	5108	.	1	440786	440788	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=94
MC	5109	.	1	444395	446003	0	0	left_inside_cov=0	left_outside_cov=132	right_inside_cov=0	right_outside_cov=130
MC	5110	.	1	446625	447542	0	0	left_inside_cov=14	left_outside_cov=34	right_inside_cov=23	right_outside_cov=24
MC	5111	.	1	491511	491522	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=85
MC	5112	.	1	513143	514604	0	0	left_inside_cov=0	left_outside_cov=101	right_inside_cov=0	right_outside_cov=101
MC	5113	.	1	525659	525662	0	0	left_inside_cov=0	left_outside_cov=166	right_inside_cov=0	right_outside_cov=166
MC	5114	.	1	591907	592888	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=22	right_outside_cov=24
MC	5115	.	1	593553	593555	0	0	left_inside_cov=0	left_outside_cov=68	right_inside_cov=0	right_outside_cov=81
MC	5116	.	1	666316	666331	0	0	left_inside_cov=0	left_outside_cov=82	right_inside_cov=0	right_outside_cov=82
MC	5117	.	1	704908	705100	51	84	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5118	.	1	714361	714702	0	188	left_inside_cov=20	left_outside_cov=33	right_inside_cov=23	right_outside_cov=24
MC	5119	.	1	751197	751200	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=95
MC	5120	.	1	796245	803059	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=21	right_outside_cov=24
MC	5121	.	1	836658	836733	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=92
MC	5122	.	1	945038	946687	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=1	right_outside_cov=77
MC	5123	.	1	957814	959678	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=102
MC	5124	.	1	984918	984920	0	0	left_inside_cov=0	left_outside_cov=52	right_inside_cov=0	right_outside_cov=52
MC	5125	.	1	1023007	1024255	0	0	left_inside_cov=0	left_outside_cov=87	right_inside_cov=0	right_outside_cov=87
MC	5126	.	1	1026969	1027564	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=23	right_outside_cov=25
MC	5127	.	1	1049808	1051204	0	0	left_inside_cov=21	left_outside_cov=27	right_inside_cov=23	right_outside_cov=24
MC	5128	.	1	1194629	1194998	0	0	left_inside_cov=18	left_outside_cov=24	right_inside_cov=4	right_outside_cov=52
MC	5129	.	1	1195073	1196968	0	0	left_inside_cov=14	left_outside_cov=25	right_inside_cov=22	right_outside_cov=28
MC	5130	.	1	1240120	1241872	0	52	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=27
MC	5131	.	1	1285859	1289588	170	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5132	.	1	1291809	1292570	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5133	.	1	1304016	1307560	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=73
MC	5134	.	1	1392146	1392748	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=35
MC	5135	.	1	1397390	1398238	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5136	.	1	1411220	1412353	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5137	.	1	1436155	1436164	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5138	.	1	1449111	1450501	906	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5139	.	1	1450874	1451610	0	0	left_inside_cov=1	left_outside_cov=36	right_inside_cov=0	right_outside_cov=28
MC	5140	.	1	1473972	1473975	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=0	right_outside_cov=84
MC	5141	.	1	1474493	1476239	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5142	.	1	1501446	1501448	0	0	left_inside_cov=0	left_outside_cov=103	right_inside_cov=0	right_outside_cov=101
MC	5143	.	1	1554871	1554873	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	5144	.	1	1562259	1563205	0	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=0	right_outside_cov=60
MC	5145	.	1	1570454	1576381	0	5926	left_inside_cov=0	left_outside_cov=95	right_inside_cov=23	right_outside_cov=24
MC	5146	.	1	1776736	1778026	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=98
MC	5147	.	1	1778231	1778945	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=29
MC	5148	.	1	1843189	1843815	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	5149	.	1	1868800	1869672	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=24
MC	5150	.	1	1982656	1982876	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5151	.	1	1991907	1992742	0	0	left_inside_cov=0	left_outside_cov=63	right_inside_cov=0	right_outside_cov=63
MC	5152	.	1	2035115	2036115	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=77
MC	5153	.	1	2050137	2052834	0	0	left_inside_cov=20	left_outside_cov=25	right_inside_cov=23	right_outside_cov=30
MC	5154	.	1	2072583	2072586	0	0	left_inside_cov=0	left_outside_cov=116	right_inside_cov=0	right_outside_cov=115
JC	5155	.	1	1	1	1	2110934	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__1__2110934__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=430	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	5156	.	1	5265	-1	1	370152	1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=2.214e-01	junction_possible_overlap_registers=210	key=1__5265__-1__1__370152__1__-4__ATTT__251__251__0__0	max_left=11	max_left_minus=4	max_left_plus=11	max_min_left=11	max_min_left_minus=4	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=2.214e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.41	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=ATTT
JC	5157	.	1	5609	-1	1	5819	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=205	key=1__5609__-1__1__5828__-1__9____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=51	max_min_left=112	max_min_left_minus=112	max_min_left_plus=51	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=412	max_right=191	max_right_minus=131	max_right_plus=191	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	5158	.	1	6715	1	1	7234	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__6715__1__1__7220__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5159	.	1	31460	1	1	31616	1	-26	alignment_overlap=-26	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=2.086e-01	junction_possible_overlap_registers=188	key=1__31460__1__1__31616__1__-26__GCTTATTCTGTGCGGCACTGTTGGCA__251__251__0__0	max_left=224	max_left_minus=219	max_left_plus=224	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=65	max_min_right_minus=65	max_min_right_plus=11	max_pos_hash_score=378	max_right=148	max_right_minus=65	max_right_plus=148	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=2.086e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=GCTTATTCTGTGCGGCACTGTTGGCA
JC	5160	.	1	48349	1	1	1413800	-1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=7.030e-01	junction_possible_overlap_registers=213	key=1__48349__1__1__1413801__-1__1____251__251__0__0	max_left=240	max_left_minus=217	max_left_plus=240	max_min_left=115	max_min_left_minus=107	max_min_left_plus=115	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=428	max_right=213	max_right_minus=187	max_right_plus=213	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.59	new_junction_read_count=52	polymorphism_frequency=7.030e-01	pos_hash_score=38	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=50
JC	5161	.	1	92924	-1	1	92964	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__92924__-1__1__92972__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	5162	.	1	107601	-1	1	107602	1	-9	alignment_overlap=-9	coverage_minus=42	coverage_plus=42	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__107601__-1__1__107602__1__-9__CCACGCTCA__251__251__0__0	max_left=235	max_left_minus=231	max_left_plus=235	max_min_left=110	max_min_left_minus=109	max_min_left_plus=110	max_min_right=115	max_min_right_minus=115	max_min_right_plus=109	max_pos_hash_score=384	max_right=240	max_right_minus=240	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.97	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=14	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=200	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84	unique_read_sequence=CCACGCTCA
JC	5163	.	1	114672	-1	1	114673	1	-3	alignment_overlap=-3	coverage_minus=43	coverage_plus=50	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__114672__-1__1__114673__1__-3__CAA__251__251__0__0	max_left=240	max_left_minus=232	max_left_plus=240	max_min_left=121	max_min_left_minus=121	max_min_left_plus=112	max_min_right=124	max_min_right_minus=124	max_min_right_plus=119	max_pos_hash_score=412	max_right=245	max_right_minus=234	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=6	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=208	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=CAA
JC	5164	.	1	126016	1	1	126526	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__126016__1__1__126511__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	5165	.	1	148809	-1	1	152196	1	0	alignment_overlap=49	coverage_minus=33	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=165	key=1__148809__-1__1__152147__1__49____251__251__0__0	max_left=201	max_left_minus=201	max_left_plus=197	max_min_left=92	max_min_left_minus=90	max_min_left_plus=92	max_min_right=100	max_min_right_minus=95	max_min_right_plus=100	max_pos_hash_score=332	max_right=196	max_right_minus=188	max_right_plus=196	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=49	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=165	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	5166	.	1	161346	-1	1	370055	-1	0	alignment_overlap=40	coverage_minus=28	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=6.160e-01	junction_possible_overlap_registers=174	key=1__161346__-1__1__370095__-1__40____251__251__0__0	max_left=211	max_left_minus=205	max_left_plus=211	max_min_left=105	max_min_left_minus=97	max_min_left_plus=105	max_min_right=92	max_min_right_minus=92	max_min_right_plus=44	max_pos_hash_score=350	max_right=207	max_right_minus=201	max_right_plus=207	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.84	new_junction_read_count=60	polymorphism_frequency=6.160e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=40	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=174	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	5167	.	1	176384	-1	1	176477	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__176384__-1__1__176484__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	5168	.	1	247632	1	1	1570453	-1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=6.236e-01	junction_possible_overlap_registers=209	key=1__247632__1__1__1570458__-1__5____251__251__0__0	max_left=185	max_left_minus=156	max_left_plus=185	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=116	max_min_right_plus=120	max_pos_hash_score=420	max_right=227	max_right_minus=205	max_right_plus=227	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.03	new_junction_read_count=89	polymorphism_frequency=6.236e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5169	.	1	247821	-1	1	428709	1	0	alignment_overlap=3	coverage_minus=50	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__247821__-1__1__428706__1__3____251__251__0__0	max_left=187	max_left_minus=180	max_left_plus=187	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=123	max_min_right_minus=114	max_min_right_plus=123	max_pos_hash_score=424	max_right=245	max_right_minus=214	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.43	new_junction_read_count=124	polymorphism_frequency=9.402e-01	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	5170	.	1	279703	-1	1	279870	1	0	alignment_overlap=39	coverage_minus=32	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=175	key=1__279703__-1__1__279831__1__39____251__251__0__1	max_left=210	max_left_minus=210	max_left_plus=210	max_min_left=105	max_min_left_minus=91	max_min_left_plus=105	max_min_right=103	max_min_right_minus=92	max_min_right_plus=103	max_pos_hash_score=352	max_right=163	max_right_minus=162	max_right_plus=163	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=2.20	new_junction_read_count=159	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=71
JC	5171	.	1	280139	1	1	280149	-1	-13	alignment_overlap=-13	coverage_minus=165	coverage_plus=105	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=201	key=1__280139__1__1__280149__-1__-13__TAAAGAGAAAGAG__251__251__1__1	max_left=237	max_left_minus=237	max_left_plus=232	max_min_left=116	max_min_left_minus=116	max_min_left_plus=112	max_min_right=116	max_min_right_minus=114	max_min_right_plus=116	max_pos_hash_score=404	max_right=235	max_right_minus=233	max_right_plus=235	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.27	new_junction_read_count=271	polymorphism_frequency=NA	pos_hash_score=117	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=270	unique_read_sequence=TAAAGAGAAAGAG
JC	5172	.	1	280139	1	1	280150	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=214	key=1__280139__1__1__280150__-1__0____251__251__1__1	max_left=201	max_left_minus=180	max_left_plus=201	max_min_left=125	max_min_left_minus=125	max_min_left_plus=86	max_min_right=118	max_min_right_minus=118	max_min_right_plus=109	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=236	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=70	polymorphism_frequency=NA	pos_hash_score=52	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	5173	.	1	281946	1	1	282085	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__281946__1__1__282068__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	5174	.	1	281962	-1	1	282067	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__281962__-1__1__282084__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	5175	.	1	282898	-1	1	283035	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__282898__-1__1__283038__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	5176	.	1	294920	-1	1	294921	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__294920__-1__1__294921__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	5177	.	1	297007	1	1	297172	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__297007__1__1__297162__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	5178	.	1	304357	1	1	304464	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.834e-02	junction_possible_overlap_registers=203	key=1__304357__1__1__304453__1__11____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=86	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=408	max_right=154	max_right_minus=154	max_right_plus=147	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.834e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	5179	.	1	313250	-1	1	313270	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__313250__-1__1__313270__1__0____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=234	max_min_left=106	max_min_left_minus=106	max_min_left_plus=105	max_min_right=122	max_min_right_minus=122	max_min_right_plus=98	max_pos_hash_score=430	max_right=243	max_right_minus=243	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	5180	.	1	363445	1	1	363495	-1	-80	alignment_overlap=-80	coverage_minus=40	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=7.966e-01	junction_possible_overlap_registers=134	key=1__363445__1__1__363495__-1__-80__GAGGTTCGAATCCTCTCGGGTGCGCCATTTTAAGTCGACTCTATGGTTTAAAATGGTTTGAGCGAGTTAAACATTCACTA__251__251__0__0	max_left=165	max_left_minus=159	max_left_plus=165	max_min_left=85	max_min_left_minus=79	max_min_left_plus=85	max_min_right=84	max_min_right_minus=78	max_min_right_plus=84	max_pos_hash_score=270	max_right=166	max_right_minus=166	max_right_plus=155	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=65	polymorphism_frequency=7.966e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.23	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=20	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=GAGGTTCGAATCCTCTCGGGTGCGCCATTTTAAGTCGACTCTATGGTTTAAAATGGTTTGAGCGAGTTAAACATTCACTA
JC	5181	.	1	370152	1	1	447704	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.007e-01	junction_possible_overlap_registers=213	key=1__370152__1__1__447703__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=21	max_min_right_minus=10	max_min_right_plus=21	max_pos_hash_score=428	max_right=21	max_right_minus=10	max_right_plus=21	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=3.007e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=10
JC	5182	.	1	370152	1	1	514957	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.984e-02	junction_possible_overlap_registers=205	key=1__370152__1__1__514957__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=7.984e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5183	.	1	370152	1	1	612539	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.093e-02	junction_possible_overlap_registers=205	key=1__370152__1__1__612539__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=5.093e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5184	.	1	370152	1	1	729182	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.130e-01	junction_possible_overlap_registers=205	key=1__370152__1__1__729182__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.130e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5185	.	1	370152	1	1	739202	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.478e-01	junction_possible_overlap_registers=213	key=1__370152__1__1__739201__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=8	max_pos_hash_score=428	max_right=15	max_right_minus=15	max_right_plus=8	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=3.478e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=8
JC	5186	.	1	370152	1	1	1448957	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.793e-02	junction_possible_overlap_registers=205	key=1__370152__1__1__1448957__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=4.793e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5187	.	1	370152	1	1	1604104	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.452e-01	junction_possible_overlap_registers=205	key=1__370152__1__1__1604104__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.452e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5188	.	1	384391	1	1	384735	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__384391__1__1__384723__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	5189	.	1	395936	1	1	395943	-1	-1	alignment_overlap=-1	coverage_minus=31	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__395936__1__1__395943__-1__-1__A__251__251__0__1	max_left=227	max_left_minus=198	max_left_plus=227	max_min_left=106	max_min_left_minus=106	max_min_left_plus=64	max_min_right=123	max_min_right_minus=94	max_min_right_plus=123	max_pos_hash_score=428	max_right=246	max_right_minus=233	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=9.707e-01	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=66	unique_read_sequence=A
JC	5190	.	1	406630	-1	1	407024	1	0	alignment_overlap=2	coverage_minus=68	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__406630__-1__1__407022__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=110	max_min_right=112	max_min_right_minus=112	max_min_right_plus=90	max_pos_hash_score=426	max_right=248	max_right_minus=243	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	5191	.	1	414939	1	1	415495	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__414939__1__1__415482__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	5192	.	1	440789	1	1	440785	-1	0	alignment_overlap=8	coverage_minus=42	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__440789__1__1__440793__-1__8____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=223	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=114	max_min_right_minus=114	max_min_right_plus=110	max_pos_hash_score=414	max_right=237	max_right_minus=226	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	5193	.	1	444394	-1	1	446004	1	0	alignment_overlap=5	coverage_minus=60	coverage_plus=67	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__444394__-1__1__445999__1__5____251__251__0__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=113	max_min_left_minus=91	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=110	max_pos_hash_score=420	max_right=243	max_right_minus=227	max_right_plus=243	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	5194	.	1	476658	-1	1	476659	1	-11	alignment_overlap=-11	coverage_minus=12	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=203	key=1__476658__-1__1__476659__1__-11__TAATTAGCAGA__251__251__0__0	max_left=239	max_left_minus=238	max_left_plus=239	max_min_left=107	max_min_left_minus=97	max_min_left_plus=107	max_min_right=119	max_min_right_minus=86	max_min_right_plus=119	max_pos_hash_score=400	max_right=236	max_right_minus=236	max_right_plus=149	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=8.868e-01	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TAATTAGCAGA
JC	5195	.	1	491510	-1	1	491523	1	0	alignment_overlap=9	coverage_minus=49	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__491510__-1__1__491514__1__9____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=237	max_min_left=118	max_min_left_minus=118	max_min_left_plus=110	max_min_right=117	max_min_right_minus=115	max_min_right_plus=117	max_pos_hash_score=412	max_right=235	max_right_minus=235	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5196	.	1	503540	-1	1	503805	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__503540__-1__1__503813__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.72	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.74	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	5197	.	1	513142	-1	1	514605	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__513142__-1__1__514598__1__7____251__251__0__0	max_left=231	max_left_minus=228	max_left_plus=231	max_min_left=121	max_min_left_minus=111	max_min_left_plus=121	max_min_right=116	max_min_right_minus=116	max_min_right_plus=115	max_pos_hash_score=416	max_right=242	max_right_minus=242	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	5198	.	1	525658	-1	1	525663	1	0	alignment_overlap=0	coverage_minus=74	coverage_plus=91	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__525658__-1__1__525663__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=247	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.88	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=165
JC	5199	.	1	562646	-1	1	562647	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__562646__-1__1__562647__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=244	max_right_minus=244	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=ATTTT
JC	5200	.	1	568538	1	1	568666	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__568538__1__1__568661__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.70	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	5201	.	1	591641	-1	1	593556	1	0	alignment_overlap=5	coverage_minus=27	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__591641__-1__1__593551__1__5____251__251__0__0	max_left=240	max_left_minus=237	max_left_plus=240	max_min_left=94	max_min_left_minus=59	max_min_left_plus=94	max_min_right=121	max_min_right_minus=107	max_min_right_plus=121	max_pos_hash_score=420	max_right=241	max_right_minus=237	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	5202	.	1	591642	1	1	1505053	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__591642__1__1__1505053__1__0____251__251__0__0	max_left=248	max_left_minus=201	max_left_plus=248	max_min_left=119	max_min_left_minus=93	max_min_left_plus=119	max_min_right=119	max_min_right_minus=113	max_min_right_plus=119	max_pos_hash_score=430	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=82	polymorphism_frequency=9.880e-01	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=81
JC	5203	.	1	591906	-1	1	1194999	1	-65	alignment_overlap=-65	coverage_minus=14	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=149	key=1__591906__-1__1__1194999__1__-65__GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT__251__251__0__0	max_left=181	max_left_minus=181	max_left_plus=178	max_min_left=82	max_min_left_minus=82	max_min_left_plus=78	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=300	max_right=114	max_right_minus=113	max_right_plus=114	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.75	new_junction_read_count=46	polymorphism_frequency=9.706e-01	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=31	unique_read_sequence=GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT
JC	5204	.	1	593195	-1	1	593196	1	-6	alignment_overlap=-6	coverage_minus=33	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__593195__-1__1__593196__1__-6__TGGCGG__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=231	max_min_left=119	max_min_left_minus=103	max_min_left_plus=119	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=416	max_right=233	max_right_minus=233	max_right_plus=227	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=82	polymorphism_frequency=9.232e-01	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=70	unique_read_sequence=TGGCGG
JC	5205	.	1	593552	-1	1	1505055	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__593552__-1__1__1505057__-1__2____251__251__0__0	max_left=73	max_left_minus=48	max_left_plus=73	max_min_left=73	max_min_left_minus=48	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=426	max_right=240	max_right_minus=240	max_right_plus=223	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.72	new_junction_read_count=63	polymorphism_frequency=9.921e-01	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=43
JC	5206	.	1	604713	-1	1	605500	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__604713__-1__1__605510__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	5207	.	1	612693	-1	1	612998	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=6.750e-01	junction_possible_overlap_registers=214	key=1__612693__-1__1__612998__1__0____251__251__0__1	max_left=242	max_left_minus=238	max_left_plus=242	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=26	max_min_right_minus=26	max_min_right_plus=26	max_pos_hash_score=430	max_right=26	max_right_minus=26	max_right_plus=26	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.31	new_junction_read_count=27	polymorphism_frequency=6.750e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	5208	.	1	612883	-1	1	613093	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__612883__-1__1__613102__-1__9____251__251__0__1	max_left=138	max_left_minus=138	max_left_plus=51	max_min_left=112	max_min_left_minus=112	max_min_left_plus=51	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=412	max_right=191	max_right_minus=131	max_right_plus=191	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	5209	.	1	631784	1	1	631900	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__631784__1__1__631893__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	5210	.	1	642663	-1	1	644770	-1	0	alignment_overlap=2	coverage_minus=51	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__642663__-1__1__644772__-1__2____251__251__0__0	max_left=228	max_left_minus=224	max_left_plus=228	max_min_left=121	max_min_left_minus=121	max_min_left_plus=106	max_min_right=112	max_min_right_minus=110	max_min_right_plus=112	max_pos_hash_score=426	max_right=224	max_right_minus=203	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=9.749e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	5211	.	1	665576	-1	1	666062	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__665576__-1__1__666067__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	5212	.	1	666332	1	1	666315	-1	0	alignment_overlap=17	coverage_minus=38	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=197	key=1__666332__1__1__666332__-1__17____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=230	max_min_left=101	max_min_left_minus=101	max_min_left_plus=78	max_min_right=116	max_min_right_minus=94	max_min_right_plus=116	max_pos_hash_score=396	max_right=233	max_right_minus=219	max_right_plus=233	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=17	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	5213	.	1	686002	1	1	686379	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__686002__1__1__686375__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	5214	.	1	717924	-1	1	718246	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__717924__-1__1__718255__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	5215	.	1	741465	-1	1	741782	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__741465__-1__1__741791__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	5216	.	1	751201	1	1	751196	-1	0	alignment_overlap=5	coverage_minus=47	coverage_plus=46	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__751201__1__1__751201__-1__5____251__251__0__0	max_left=243	max_left_minus=206	max_left_plus=243	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=114	max_min_right_plus=120	max_pos_hash_score=420	max_right=245	max_right_minus=236	max_right_plus=245	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5217	.	1	757095	1	1	757438	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__757095__1__1__757428__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	5218	.	1	778566	-1	1	778649	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__778566__-1__1__778657__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5219	.	1	828880	1	1	829458	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__828880__1__1__829448__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	5220	.	1	836657	-1	1	836734	1	-57	alignment_overlap=-57	coverage_minus=39	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=157	key=1__836657__-1__1__836734__1__-57__GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA__251__251__0__0	max_left=191	max_left_minus=182	max_left_plus=191	max_min_left=92	max_min_left_minus=88	max_min_left_plus=92	max_min_right=92	max_min_right_minus=92	max_min_right_plus=92	max_pos_hash_score=278	max_right=187	max_right_minus=187	max_right_plus=181	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.83	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=19	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=195	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63	unique_read_sequence=GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
JC	5221	.	1	840163	-1	1	840729	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__840163__-1__1__840739__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	5222	.	1	872242	-1	1	872243	1	-6	alignment_overlap=-6	coverage_minus=18	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__872242__-1__1__872243__1__-6__TAAAGG__251__251__0__0	max_left=193	max_left_minus=164	max_left_plus=193	max_min_left=109	max_min_left_minus=77	max_min_left_plus=109	max_min_right=99	max_min_right_minus=99	max_min_right_plus=52	max_pos_hash_score=410	max_right=233	max_right_minus=233	max_right_plus=202	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.35	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TAAAGG
JC	5223	.	1	885506	-1	1	885510	1	0	alignment_overlap=1	coverage_minus=29	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=7.616e-01	junction_possible_overlap_registers=213	key=1__885506__-1__1__885509__1__1____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=188	max_min_left=94	max_min_left_minus=94	max_min_left_plus=94	max_min_right=110	max_min_right_minus=90	max_min_right_plus=110	max_pos_hash_score=428	max_right=163	max_right_minus=163	max_right_plus=149	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.58	new_junction_read_count=51	polymorphism_frequency=7.616e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=41
JC	5224	.	1	898407	-1	1	898541	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__898407__-1__1__898547__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	5225	.	1	915402	-1	1	915403	1	-9	alignment_overlap=-9	coverage_minus=41	coverage_plus=64	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__915402__-1__1__915403__1__-9__GAGAACAAA__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=235	max_min_left=119	max_min_left_minus=111	max_min_left_plus=119	max_min_right=121	max_min_right_minus=96	max_min_right_plus=121	max_pos_hash_score=394	max_right=234	max_right_minus=205	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=205	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=GAGAACAAA
JC	5226	.	1	921707	1	1	922057	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__921707__1__1__922046__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	5227	.	1	929164	-1	1	929237	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__929164__-1__1__929246__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	5228	.	1	945037	-1	1	946688	1	0	alignment_overlap=29	coverage_minus=36	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=185	key=1__945037__-1__1__946659__1__29____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=215	max_min_left=107	max_min_left_minus=107	max_min_left_plus=97	max_min_right=109	max_min_right_minus=109	max_min_right_plus=107	max_pos_hash_score=372	max_right=218	max_right_minus=206	max_right_plus=218	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=29	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=185	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	5229	.	1	957813	-1	1	959679	1	0	alignment_overlap=3	coverage_minus=57	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__957813__-1__1__959676__1__3____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=121	max_min_right_minus=117	max_min_right_plus=121	max_pos_hash_score=424	max_right=246	max_right_minus=231	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	5230	.	1	984921	1	1	984917	-1	0	alignment_overlap=9	coverage_minus=24	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__984921__1__1__984926__-1__9____251__251__0__0	max_left=222	max_left_minus=192	max_left_plus=222	max_min_left=95	max_min_left_minus=93	max_min_left_plus=95	max_min_right=93	max_min_right_minus=70	max_min_right_plus=93	max_pos_hash_score=412	max_right=235	max_right_minus=234	max_right_plus=235	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50
JC	5231	.	1	995148	-1	1	995149	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__995148__-1__1__995149__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	5232	.	1	1023006	-1	1	1024256	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1023006__-1__1__1024254__1__2____251__251__0__0	max_left=246	max_left_minus=243	max_left_plus=246	max_min_left=115	max_min_left_minus=115	max_min_left_plus=91	max_min_right=112	max_min_right_minus=98	max_min_right_plus=112	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.00	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	5233	.	1	1134691	-1	1	1134695	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__1134691__-1__1__1134708__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	5234	.	1	1152284	-1	1	1152634	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__1152284__-1__1__1152640__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	5235	.	1	1160342	1	1	1160636	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1160342__1__1__1160627__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	5236	.	1	1219701	-1	1	1219953	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1219701__-1__1__1219957__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	5237	.	1	1222363	1	1	1222750	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1222363__1__1__1222741__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	5238	.	1	1237120	1	1	1237125	-1	-15	alignment_overlap=-15	coverage_minus=66	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=199	key=1__1237120__1__1__1237125__-1__-15__ACTTAAAATCGGCAA__251__251__0__1	max_left=234	max_left_minus=234	max_left_plus=209	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=116	max_min_right_minus=116	max_min_right_plus=114	max_pos_hash_score=400	max_right=235	max_right_minus=235	max_right_plus=208	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=98	polymorphism_frequency=9.906e-01	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98	unique_read_sequence=ACTTAAAATCGGCAA
JC	5239	.	1	1251761	1	1	1252453	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1251761__1__1__1252446__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	5240	.	1	1261883	1	1	1262129	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1261883__1__1__1262118__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	5241	.	1	1268089	1	1	1268216	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1268089__1__1__1268211__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5242	.	1	1268093	-1	1	1268210	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1268093__-1__1__1268215__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5243	.	1	1288640	-1	1	1289309	1	-3	alignment_overlap=-3	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1288640__-1__1__1289309__1__-3__CGA__251__251__0__0	max_left=80	max_left_minus=40	max_left_plus=80	max_min_left=56	max_min_left_minus=40	max_min_left_plus=56	max_min_right=50	max_min_right_minus=21	max_min_right_plus=50	max_pos_hash_score=424	max_right=208	max_right_minus=208	max_right_plus=64	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=CGA
JC	5244	.	1	1301647	-1	1	1301648	1	-10	alignment_overlap=-10	coverage_minus=35	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=204	key=1__1301647__-1__1__1301648__1__-10__CCTCACCTCA__251__251__0__0	max_left=224	max_left_minus=217	max_left_plus=224	max_min_left=113	max_min_left_minus=113	max_min_left_plus=77	max_min_right=119	max_min_right_minus=119	max_min_right_plus=72	max_pos_hash_score=374	max_right=239	max_right_minus=239	max_right_plus=204	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.70	new_junction_read_count=59	polymorphism_frequency=9.517e-01	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=18	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=196	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=CCTCACCTCA
JC	5245	.	1	1301892	-1	1	1301893	1	-3	alignment_overlap=-3	coverage_minus=21	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1301892__-1__1__1301893__1__-3__TTA__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=234	max_min_left=123	max_min_left_minus=123	max_min_left_plus=105	max_min_right=118	max_min_right_minus=75	max_min_right_plus=118	max_pos_hash_score=416	max_right=230	max_right_minus=230	max_right_plus=230	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.54	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=TTA
JC	5246	.	1	1304015	-1	1	1307561	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1304015__-1__1__1307556__1__5____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=232	max_min_left=119	max_min_left_minus=116	max_min_left_plus=119	max_min_right=114	max_min_right_minus=109	max_min_right_plus=114	max_pos_hash_score=420	max_right=243	max_right_minus=243	max_right_plus=236	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	5247	.	1	1324626	-1	1	1324676	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__1324626__-1__1__1324698__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	5248	.	1	1370454	-1	1	1370726	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.947e-02	junction_possible_overlap_registers=206	key=1__1370454__-1__1__1370734__-1__8____251__251__0__0	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.947e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	5249	.	1	1388585	-1	1	1388586	1	-5	alignment_overlap=-5	coverage_minus=14	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1388585__-1__1__1388586__1__-5__CTTGC__251__251__0__0	max_left=217	max_left_minus=179	max_left_plus=217	max_min_left=121	max_min_left_minus=114	max_min_left_plus=121	max_min_right=104	max_min_right_minus=104	max_min_right_plus=56	max_pos_hash_score=376	max_right=151	max_right_minus=151	max_right_plus=139	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.28	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=22	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=192	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=CTTGC
JC	5250	.	1	1388720	-1	1	1388721	1	-9	alignment_overlap=-9	coverage_minus=23	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1388720__-1__1__1388721__1__-9__CAACTTACC__251__251__0__0	max_left=201	max_left_minus=201	max_left_plus=175	max_min_left=117	max_min_left_minus=117	max_min_left_plus=111	max_min_right=120	max_min_right_minus=120	max_min_right_plus=96	max_pos_hash_score=380	max_right=234	max_right_minus=234	max_right_plus=216	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.52	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=16	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=CAACTTACC
JC	5251	.	1	1390707	1	1	1390920	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1390707__1__1__1390914__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	5252	.	1	1392145	-1	1	1392749	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1392145__-1__1__1392747__1__2____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=230	max_min_left=115	max_min_left_minus=115	max_min_left_plus=109	max_min_right=120	max_min_right_minus=120	max_min_right_plus=70	max_pos_hash_score=426	max_right=206	max_right_minus=176	max_right_plus=206	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.40	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	5253	.	1	1397389	-1	1	1398239	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1397389__-1__1__1398237__1__2____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=91	max_pos_hash_score=426	max_right=246	max_right_minus=226	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	5254	.	1	1398309	-1	1	1398501	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.222e-02	junction_possible_overlap_registers=205	key=1__1398309__-1__1__1398510__-1__9____251__251__0__0	max_left=64	max_left_minus=57	max_left_plus=64	max_min_left=64	max_min_left_minus=57	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.222e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	5255	.	1	1436154	-1	1	1436165	1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1436154__-1__1__1436164__1__1____251__251__0__0	max_left=247	max_left_minus=229	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=104	max_min_right=122	max_min_right_minus=114	max_min_right_plus=122	max_pos_hash_score=428	max_right=238	max_right_minus=235	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	5256	.	1	1438927	-1	1	1439527	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1438927__-1__1__1439537__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	5257	.	1	1450873	-1	1	1451611	1	-25	alignment_overlap=-25	coverage_minus=8	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=189	key=1__1450873__-1__1__1451611__1__-25__TACGTGCTTGAATTTATGCTTACAT__251__251__0__0	max_left=221	max_left_minus=221	max_left_plus=203	max_min_left=62	max_min_left_minus=18	max_min_left_plus=62	max_min_right=100	max_min_right_minus=100	max_min_right_plus=43	max_pos_hash_score=380	max_right=224	max_right_minus=163	max_right_plus=224	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.35	new_junction_read_count=27	polymorphism_frequency=9.839e-01	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TACGTGCTTGAATTTATGCTTACAT
JC	5258	.	1	1473971	-1	1	1473976	1	0	alignment_overlap=5	coverage_minus=44	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1473971__-1__1__1473971__1__5____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=212	max_min_left=94	max_min_left_minus=94	max_min_left_plus=83	max_min_right=120	max_min_right_minus=120	max_min_right_plus=66	max_pos_hash_score=420	max_right=245	max_right_minus=245	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	5259	.	1	1496280	-1	1	1496281	1	-3	alignment_overlap=-3	coverage_minus=61	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1496280__-1__1__1496281__1__-3__TTT__251__251__0__0	max_left=225	max_left_minus=225	max_left_plus=224	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=124	max_min_right_minus=124	max_min_right_plus=117	max_pos_hash_score=424	max_right=233	max_right_minus=233	max_right_plus=230	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114	unique_read_sequence=TTT
JC	5260	.	1	1501449	1	1	1501445	-1	0	alignment_overlap=6	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1501449__1__1__1501451__-1__6____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=122	max_min_left_minus=122	max_min_left_plus=99	max_min_right=117	max_min_right_minus=97	max_min_right_plus=117	max_pos_hash_score=418	max_right=242	max_right_minus=242	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	5261	.	1	1514882	-1	1	1515491	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__1514882__-1__1__1515497__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	5262	.	1	1523747	-1	1	1524255	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1523747__-1__1__1524265__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	5263	.	1	1554870	-1	1	1554874	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1554870__-1__1__1554872__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=124	max_min_left_minus=104	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=426	max_right=242	max_right_minus=201	max_right_plus=242	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	5264	.	1	1562258	-1	1	1563206	1	-53	alignment_overlap=-53	coverage_minus=22	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=161	key=1__1562258__-1__1__1563206__1__-53__CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG__251__251__0__0	max_left=189	max_left_minus=189	max_left_plus=188	max_min_left=97	max_min_left_minus=97	max_min_left_plus=95	max_min_right=97	max_min_right_minus=92	max_min_right_plus=97	max_pos_hash_score=324	max_right=186	max_right_minus=186	max_right_plus=154	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.74	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
JC	5265	.	1	1579829	1	1	1580072	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1579829__1__1__1580063__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	5266	.	1	1640983	-1	1	1641915	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__1640983__-1__1__1641922__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	5267	.	1	1642173	1	1	1642296	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__1642173__1__1__1642285__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5268	.	1	1771524	1	1	1771872	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1771524__1__1__1771860__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	5269	.	1	1776735	-1	1	1778027	1	0	alignment_overlap=2	coverage_minus=56	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1776735__-1__1__1778025__1__2____251__251__0__0	max_left=245	max_left_minus=238	max_left_plus=245	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=117	max_pos_hash_score=426	max_right=234	max_right_minus=234	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5270	.	1	1795657	-1	1	1795827	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1795657__-1__1__1795833__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	5271	.	1	1795690	-1	1	1795797	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1795690__-1__1__1795807__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	5272	.	1	1819091	-1	1	1819269	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1819091__-1__1__1819275__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	5273	.	1	1822393	-1	1	1822764	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1822393__-1__1__1822774__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5274	.	1	1832314	-1	1	1832419	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1832314__-1__1__1832429__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	5275	.	1	1836856	1	1	1837984	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1836856__1__1__1837974__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	5276	.	1	1881224	1	1	1881392	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1881224__1__1__1881387__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	5277	.	1	1885576	1	1	1885590	-1	-6	alignment_overlap=-6	coverage_minus=45	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1885576__1__1__1885590__-1__-6__TTTTTC__251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=231	max_min_left=116	max_min_left_minus=116	max_min_left_plus=113	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=418	max_right=238	max_right_minus=232	max_right_plus=238	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=89	polymorphism_frequency=9.290e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89	unique_read_sequence=TTTTTC
JC	5278	.	1	1899264	1	1	1899439	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1899264__1__1__1899427__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	5279	.	1	1928798	1	1	1928952	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1928798__1__1__1928939__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	5280	.	1	1940764	-1	1	1940765	1	-3	alignment_overlap=-3	coverage_minus=47	coverage_plus=38	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1940764__-1__1__1940765__1__-3__TAT__251__251__0__0	max_left=243	max_left_minus=233	max_left_plus=243	max_min_left=119	max_min_left_minus=102	max_min_left_plus=119	max_min_right=114	max_min_right_minus=113	max_min_right_plus=114	max_pos_hash_score=416	max_right=247	max_right_minus=247	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.89	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=TAT
JC	5281	.	1	1972798	1	1	1973102	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.616e-02	junction_possible_overlap_registers=206	key=1__1972798__1__1__1973094__1__8____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=122	max_min_left=1	max_min_left_minus=1	max_min_left_plus=1	max_min_right=122	max_min_right_minus=97	max_min_right_plus=122	max_pos_hash_score=414	max_right=240	max_right_minus=97	max_right_plus=240	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.616e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=4
JC	5282	.	1	1982863	-1	1	1982867	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1982863__-1__1__1982866__1__1____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=67	max_min_left=110	max_min_left_minus=110	max_min_left_plus=67	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=428	max_right=246	max_right_minus=241	max_right_plus=246	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.24	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	5283	.	1	1991906	-1	1	1992743	1	0	alignment_overlap=2	coverage_minus=26	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1991906__-1__1__1992741__1__2____251__251__0__0	max_left=246	max_left_minus=226	max_left_plus=246	max_min_left=120	max_min_left_minus=120	max_min_left_plus=104	max_min_right=121	max_min_right_minus=121	max_min_right_plus=121	max_pos_hash_score=426	max_right=247	max_right_minus=221	max_right_plus=247	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.72	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	5284	.	1	2002433	-1	1	2002553	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__2002433__-1__1__2002561__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	5285	.	1	2033450	-1	1	2033451	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2033450__-1__1__2033451__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	5286	.	1	2035114	-1	1	2036116	1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2035114__-1__1__2036111__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=122	max_min_left_minus=115	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=116	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	5287	.	1	2072587	1	1	2072582	-1	0	alignment_overlap=5	coverage_minus=52	coverage_plus=60	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2072587__1__1__2072587__-1__5____251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=191	max_min_left=120	max_min_left_minus=120	max_min_left_plus=117	max_min_right=120	max_min_right_minus=108	max_min_right_plus=120	max_pos_hash_score=420	max_right=242	max_right_minus=239	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	5288	.	1	2076986	-1	1	2077786	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__2076986__-1__1__2077792__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	5289	.	1	2098806	-1	1	2098807	1	-8	alignment_overlap=-8	coverage_minus=41	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__2098806__-1__1__2098807__1__-8__GGTCGGTT__251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=217	max_min_left=111	max_min_left_minus=100	max_min_left_plus=111	max_min_right=118	max_min_right_minus=118	max_min_right_plus=99	max_pos_hash_score=414	max_right=235	max_right_minus=235	max_right_plus=217	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81	unique_read_sequence=GGTCGGTT
UN	5290	.	1	5362	6092
UN	5291	.	1	8391	31460
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UN	5293	.	1	149608	149609
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UN	5296	.	1	217366	217375
UN	5297	.	1	247653	247653
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UN	5299	.	1	313251	313269
UN	5300	.	1	343432	343432
UN	5301	.	1	370056	370160
UN	5302	.	1	391064	391829
UN	5303	.	1	395929	395935
UN	5304	.	1	406631	407023
UN	5305	.	1	426162	426225
UN	5306	.	1	428707	428708
UN	5307	.	1	429027	434422
UN	5308	.	1	440786	440788
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UN	5310	.	1	446663	447511
UN	5311	.	1	491511	491522
UN	5312	.	1	513143	514604
UN	5313	.	1	515070	515861
UN	5314	.	1	525659	525662
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UN	5325	.	1	722011	722019
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UN	5328	.	1	738606	739117
UN	5329	.	1	751197	751200
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UN	5332	.	1	841979	842752
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UN	5334	.	1	957814	959678
UN	5335	.	1	984918	984920
UN	5336	.	1	1023007	1024255
UN	5337	.	1	1024766	1024766
UN	5338	.	1	1027039	1027529
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UN	5340	.	1	1027540	1027540
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