New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1288640	0 (0.000)	10 (0.110) +CGA	7/424	5.6	100%	intergenic (‑181/‑132)	unknown/unknown	hypothetical protein/hypothetical protein
	?	1	1289309 =	0 (0.000)					intergenic (+13/+318)	unknown/unknown	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

AACCTTTAATTTCATTATCTTGTAAACACGCGACACAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/1288541‑1288640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTATAGTCAAGAACAAAAAGTACACATTTTAGATAAAATGTACTAAATGTTCATATTTAATTGATTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTT  >  1/1289309‑1289516                                                                                                     |||                                                                                                                                                                                                                 catctaattccttttgcgccTGTAAACACGCGACACAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTATAGTCAAGAACAAAAAGTACATATTTTAGATAAAATGTATTAAATGTTCATAT                                                                                              <  1:132893/199‑1      aattccttttgcgccTGTAAACACGCGACACAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGT                                                                                                                                                         >  1:564406/16‑155                     TGTAAACCCGCGACACAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGT                                                                                                                                                                  <  1:843996/131‑1                                    CAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTAC                                                                                                                                                                <  1:581910/118‑1                                             GCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTAT                                                                                                                                                  <  1:481138/123‑1                                                             ACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTATAGTCAAGAACAAAAAGTACATATTTTAGATAAAATGTATTAAATGTTCATATTTAATTGATTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTT  >  1:106150/1‑251                                                                TAAATCAGCCGATAATTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTAT                                                                                                                                                                       <  1:42243/83‑1                                                                               TTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTATAGTCAAGAACAAAAAG                                                                                                                                  >  1:760012/1‑105                                                                               TTTATATCCCGCATGAGACCAACGATTTTAAAGAGCAACTCAAAGT                                                                                                                                                                                             >  1:695574/1‑46                                                                                         GCATGAGACCAACGATTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTAT                                                                                                                                                                    <  1:344860/61‑1                                                                                                     |||                                                                                                                                                                                                                 AACCTTTAATTTCATTATCTTGTAAACACGCGACACAGTTTTCTGCTTGGGGGTTACTCGACTTAAATCAGCCGATAATTTATATCCCGCATGAGACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/1288541‑1288640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAAAGAGCAACTCAAAGTGGTTTGCTTTGATGTGGTGTATTATGTACTTATAGTTCATTATAGTCAAGAACAAAAAGTACACATTTTAGATAAAATGTACTAAATGTTCATATTTAATTGATTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTT  >  1/1289309‑1289516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.