mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 294 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,984,942 | 0 | A | . | 79.1% | 90.6 / 32.7 | 43 | intergenic (+99/+171) | unknown/unknown | Myo‑inositol 2‑dehydrogenase 1 (EC 1.1.1.18)/RTX toxin transporter, determinant D |
| * | 1 | 1,774,879 | 0 | T | . | 77.2% | 165.7 / 70.9 | 79 | coding (429/606 nt) | unknown | Outer membrane receptor proteins, mostly Fe transport |
| * | 1 | 1,774,880 | 0 | T | . | 77.2% | 166.0 / 70.6 | 79 | coding (430/606 nt) | unknown | Outer membrane receptor proteins, mostly Fe transport |
| * | 1 | 90,754 | 0 | G | T | 76.8% | 385.1 / 130.2 | 185 | Y125* (TAC→TAA) | unknown | hypothetical protein |
| * | 1 | 171,611 | 0 | G | T | 76.7% | 310.9 / 103.9 | 176 | A13D (GCC→GAC) | unknown | hypothetical protein |
| * | 1 | 1,539,051 | 0 | A | G | 70.5% | 113.9 / 14.4 | 63 | N3N (AAT→AAC) | unknown | Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17) |
| * | 1 | 1,586,142 | 0 | T | C | 67.7% | 28.3 / 18.6 | 34 | intergenic (‑191/+92) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Glutamate racemase (EC 5.1.1.3) |
| * | 1 | 486,482 | 1 | . | T | 66.7% | 23.2 / 12.8 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 2 | . | A | 66.7% | 24.6 / 12.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 3 | . | A | 66.7% | 23.1 / 12.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 4 | . | T | 66.7% | 25.0 / 12.8 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 5 | . | T | 66.7% | 24.4 / 12.8 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 6 | . | A | 66.7% | 24.9 / 12.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 7 | . | G | 66.7% | 23.4 / 14.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 8 | . | C | 66.7% | 23.7 / 14.8 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 9 | . | A | 66.7% | 24.5 / 12.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 10 | . | G | 66.7% | 23.4 / 14.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 486,482 | 11 | . | A | 66.7% | 24.5 / 12.6 | 15 | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| * | 1 | 524,745 | 0 | C | T | 64.7% | 126.3 / 139.4 | 184 | T11I (ACT→ATT) | unknown | hypothetical protein |
| * | 1 | 524,795 | 0 | T | C | 63.5% | 120.1 / 114.6 | 156 | F28L (TTT→CTT) | unknown | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 68 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 486482 | 2 (0.020) | 15 (0.180) +TAATTAGCAGA |
16/400 | 3.1 | 88.7% | intergenic (‑98/‑87) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB |
| ? | 1 | 486483 = | 2 (0.020) | intergenic (‑99/‑86) | unknown/unknown | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)/Cell division protein ZapB | |||||
| * | ? | 1 | = 292479 | NA (NA) | 12 (0.150) | 9/396 | 4.7 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 292584 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 1298542 | 0 (0.000) | 10 (0.110) +CGA |
7/424 | 5.6 | 100% | intergenic (‑181/‑132) | unknown/unknown | hypothetical protein/hypothetical protein |
| ? | 1 | 1299211 = | 0 (0.000) | intergenic (+13/+318) | unknown/unknown | hypothetical protein/hypothetical protein | |||||
| * | ? | 1 | = 171699 | 132 (1.500) | 10 (0.130) +21 bp |
6/388 | 5.6 | 10.0% | intergenic (‑51/+247) | unknown/unknown | hypothetical protein/DNA polymerase III alpha subunit (EC 2.7.7.7) |
| ? | 1 | = 524855 | 68 (0.770) | intergenic (+10/‑101) | unknown/unknown | hypothetical protein/Mobile element protein | |||||
| * | ? | 1 | 1232244 = | 101 (1.140) | 6 (0.070) | 5/412 | 6.2 | 5.7% | coding (734/1953 nt) | unknown | Electron transport complex protein RnfC |
| ? | 1 | 1232631 = | 100 (1.180) | coding (1121/1953 nt) | unknown | Electron transport complex protein RnfC | |||||
| * | ? | 1 | 766931 = | 79 (0.900) | 6 (0.070) | 5/410 | 6.2 | 6.1% | coding (39/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) |
| ? | 1 | 767274 = | 111 (1.320) | coding (382/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) | |||||
| * | ? | 1 | 1278403 = | 87 (0.990) | 7 (0.080) | 5/418 | 6.3 | 6.8% | coding (632/699 nt) | unknown | FIG005121: SAM‑dependent methyltransferase (EC 2.1.1.‑) |
| ? | 1 | 1278805 = | 107 (1.250) | coding (230/699 nt) | unknown | FIG005121: SAM‑dependent methyltransferase (EC 2.1.1.‑) | |||||
| * | ? | 1 | = 1229582 | 89 (1.010) | 5 (0.060) | 5/422 | 6.3 | 5.3% | coding (322/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains |
| ? | 1 | = 1229834 | 92 (1.060) | coding (574/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains | |||||
| * | ? | 1 | = 908243 | 115 (1.300) | 5 (0.060) | 5/418 | 6.3 | 4.4% | intergenic (+260/‑4) | unknown/unknown | Carbon starvation protein A/Transcriptional regulator MraZ |
| ? | 1 | = 908377 | 106 (1.240) | coding (131/459 nt) | unknown | Transcriptional regulator MraZ | |||||
| * | ? | 1 | = 1334559 | 76 (0.860) | 4 (0.050) | 4/386 | 6.4 | 5.3% | intergenic (‑34/+162) | unknown/unknown | Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein/Excinuclease ABC subunit C |
| ? | 1 | = 1334609 | 74 (0.930) | intergenic (‑84/+112) | unknown/unknown | Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein/Excinuclease ABC subunit C | |||||