New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 = 171699132 (1.500)10 (0.130)
+ATAAGGCGATTTTACGCCATC		 6/388 5.6 10.0% intergenic (‑51/+247) unknown/unknown hypothetical protein/DNA polymerase III alpha subunit (EC 2.7.7.7)
?1 = 524855 68 (0.770)intergenic (+10/‑101) unknown/unknown hypothetical protein/Mobile element protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTTCAATCTGCGTTTTTTTCATTTTGGGTTTCATAATTTTGGAGGTTTTAGGTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/171642‑171699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGGGTTTTGGGGGGCAGAT  <  1/524855‑524671
                                                          |||||||||||||||||||||                                                                                                                                                                                         
ACTTCAATCTGCGTTCTTTTCATTTAGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGAT                                                                              <  1:768583/188‑1
             ttcTTTTCATTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCagttttttttggtagggt  <  1:774887/248‑19
                            GTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGC                                                                                                                        <  1:556160/118‑1
                                  gAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCt                                                                                                                       >  1:682251/2‑112
                                            GGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTA                           <  1:586944/195‑1
                                              TTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATC                                         <  1:756887/179‑1
                                                   GGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCgctcatatac                                                                                                          <  1:100213/109‑11
                                                   GGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCagttt               <  1:734863/200‑6
                                                        GTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATC                                         >  1:592493/1‑169
                                                        GTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGAC                                               <  1:590883/163‑1
                                                                  ATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCagttt               <  1:803169/185‑6
                                                                  ATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGG                         >  1:696063/1‑175
                                                          |||||||||||||||||||||                                                                                                                                                                                         
ACTTCAATCTGCGTTTTTTTCATTTTGGGTTTCATAATTTTGGAGGTTTTAGGTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/171642‑171699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGGGTTTTGGGGGGCAGAT  <  1/524855‑524671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.