mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.0 revision fe39cd8f5880
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 337 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NODE_92 | 312 | 0 | G | C | 70.3% | 826.0 / inf | 559 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 311 | 0 | G | A | 70.1% | 695.9 / inf | 559 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 309 | 0 | C | T | 70.0% | 669.5 / inf | 559 | intergenic (–/–) | –/– | –/– |
| * | NODE_93 | 489 | 0 | T | C | 69.9% | 1282.1 / inf | 791 | intergenic (–/–) | –/– | –/– |
| * | NODE_93 | 483 | 0 | C | T | 69.8% | 1078.8 / inf | 765 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 316 | 0 | T | G | 69.7% | 972.8 / inf | 603 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 246 | 0 | A | G | 68.8% | 796.8 / inf | 543 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 124 | 0 | A | G | 68.7% | 421.5 / inf | 507 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 240 | 0 | A | G | 68.2% | 749.9 / inf | 539 | intergenic (–/–) | –/– | –/– |
| * | NODE_93 | 431 | 0 | G | C | 68.1% | 738.1 / inf | 603 | intergenic (–/–) | –/– | –/– |
| * | NODE_95 | 489 | 0 | A | T | 68.0% | 606.0 / inf | 426 | intergenic (‑54/–) | EcoliAnna_04303/– | tRNA‑Ile/– |
| * | NODE_92 | 156 | 0 | C | G | 68.0% | 436.1 / inf | 531 | intergenic (–/–) | –/– | –/– |
| * | NODE_95 | 483 | 0 | T | G | 67.6% | 671.9 / inf | 453 | intergenic (‑48/–) | EcoliAnna_04303/– | tRNA‑Ile/– |
| * | NODE_92 | 186 | 0 | T | C | 67.6% | 547.2 / inf | 537 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 138 | 0 | T | G | 66.7% | 317.1 / inf | 518 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 78 | 0 | C | T | 66.7% | 90.7 / 293.4 | 307 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 200 | 0 | A | C | 66.6% | 555.1 / inf | 547 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 135 | 0 | T | C | 66.3% | 341.7 / inf | 521 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 136 | 0 | G | A | 66.3% | 267.4 / inf | 520 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 132 | 0 | C | T | 66.0% | 263.1 / inf | 519 | intergenic (–/–) | –/– | –/– |
| Marginal new junction evidence (lowest skew 10 of 213 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NODE_4 | = 77360 | 122 (0.590) | 99 (0.540) | 80/266 | 3.5 | 51.0% | coding (53/537 nt) | EcoliAnna_00891 | integrase |
| ? | NODE_4 | = 79157 | 81 (0.440) | coding (306/630 nt) | EcoliAnna_00894 | integrase | |||||
| * | ? | NODE_20 | 46559 = | 197 (0.900) | 155 (0.740) +GAAGTGGT |
82/282 | 3.8 | 62.5% | noncoding (1/76 nt) | EcoliAnna_02847 | tRNA‑Lys |
| ? | NODE_69 | 1 = | 0 (0.000) | noncoding (72/72 nt) | EcoliAnna_04270 | tRNA‑Val | |||||
| * | ? | NODE_8 | 1 = | 0 (0.000) | 120 (0.100) | 77/252 | 4.0 | 100% | intergenic (–/+54) | –/EcoliAnna_01515 | –/glycosyltransferase |
| ? | NODE_83 | 24 = | 0 (0.000) | coding (10/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||
| * | ? | NODE_40 | 33918 = | NA (NA) | 107 (0.750) +55 bp |
50/188 | 4.1 | NA | intergenic (‑462/–) | EcoliAnna_03789/– | IS3‑like element IS3 family transposase/– |
| ? | NODE_44 | 31549 = | NA (NA) | intergenic (‑230/–) | EcoliAnna_03915/– | GTPase family protein/– | |||||
| * | ? | NODE_4 | 77345 = | 117 (0.570) | 93 (0.510) | 75/266 | 4.2 | 48.5% | coding (38/537 nt) | EcoliAnna_00891 | integrase |
| ? | NODE_4 | 79174 = | 93 (0.510) | coding (289/630 nt) | EcoliAnna_00894 | integrase | |||||
| * | ? | NODE_20 | 46773 = | 265 (1.210) | 98 (0.790) +66 bp |
41/166 | 4.6 | 57.0% | intergenic (+139/‑294) | EcoliAnna_02847/nadA | tRNA‑Lys/quinolinate synthase NadA |
| ? | NODE_69 | 1 = | 0 (0.000) | noncoding (72/72 nt) | EcoliAnna_04270 | tRNA‑Val | |||||
| * | ? | NODE_10 | = 133230 | 0 (0.000) | 128 (0.100) | 80/258 | 4.6 | 100% | intergenic (‑4/–) | EcoliAnna_01911/– | N‑acetyltransferase/– |
| ? | NODE_83 | 21 = | 0 (0.000) | coding (7/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||
| * | ? | NODE_13 | 1 = | 0 (0.000) | 108 (0.130) | 76/274 | 4.7 | 100% | intergenic (–/+317) | –/gatZ | –/tagatose‑bisphosphate aldolase subunit GatZ |
| ? | NODE_94 | 13 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | NODE_3 | 24 = | 44 (0.200) | 98 (0.790) +66 bp |
41/166 | 4.9 | 88.9% | intergenic (–/+126) | –/EcoliAnna_00633 | –/LysR family transcriptional regulator |
| ? | NODE_69 | 1 = | 0 (0.000) | noncoding (72/72 nt) | EcoliAnna_04270 | tRNA‑Val | |||||
| * | ? | NODE_14 | = 113021 | 114 (0.460) | 17 (0.440) +126 bp |
8/46 | 4.9 | 54.4% | intergenic (‑480/–) | yjdN/– | VOC family metalloprotein YjdN/– |
| ? | NODE_14 | 113049 = | 71 (0.290) | intergenic (‑508/–) | yjdN/– | VOC family metalloprotein YjdN/– | |||||