mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,029,359 | T→C | intergenic (‑104642/‑85749) | unknown ← / → unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| JC | 1 | 1,143,909 | (CACCT)4→3 | intergenic (+4779/+249398) | unknown → / ← unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | 1 | 1685027 | 1686554 | 1528 | 38 [32] | [35] 36 | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 1 = | 0 (0.000) | 91 (1.150) | 60/446 | 0.6 | 100% | intergenic (–/+2429) | –/unknown | –/tRNA‑Ala‑GGC |
| ? | 2 | = 196 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 1 | 279581 = | NA (NA) | 119 (1.160) | 68/406 | 0.2 | NA | intergenic (‑65697/+102) | unknown/unknown | tRNA‑Ser‑GCT/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 577062 = | NA (NA) | intergenic (+97/‑11067) | unknown/unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/tRNA‑Pro‑TGG | |||||
| * | ? | 1 | = 2102524 | 0 (0.000) | 85 (1.070) | 58/446 | 0.7 | 100% | intergenic (‑202781/–) | unknown/– | tRNA‑Met‑CAT/– |
| ? | 2 | 1 = | NA (NA) | intergenic (–/–) | –/– | –/– | |||||