| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 960,219 | 1 | . | C | 52.0% | 81.5 / 93.1 | 50 | intergenic (+222/‑181) | unknown/unknown | Magnesium and cobalt efflux protein CorC/Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE |
| Reads supporting (aligned to +/- strand): ref base . (12/12); new base C (11/15); total (23/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGGAAGAGGTTGTGGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAGTAGTTACAATGTAGTTACAATGTTTCGAACAGCTGTGGTTTCCCGACGCGTGCCGTTTATTTCATTAAATAACGAAAATTTAGGAATTGCGTGAGAAAACGCGCGCTATCCCGCTTATGAACAAATATTTCACTTATCTTATCGCACTCATTTTCGGCGCTGCCGGCGTGTTTGCCTTTGCACCC > 1/959977‑960468 | gaggaagaggTTGTGGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAggg > 1:825179/1‑250 (MQ=255) aggaagaggTTGTGGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:529525/250‑1 (MQ=255) aggaagaggTTGTGGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:724638/250‑1 (MQ=255) gtgGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:560273/239‑1 (MQ=255) tgGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTc < 1:480671/250‑1 (MQ=255) cGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTccccc < 1:882293/251‑1 (MQ=255) ttcttTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGa < 1:590203/251‑1 (MQ=255) tcttTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:693899/225‑1 (MQ=255) ccccTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAg > 1:746834/1‑251 (MQ=255) ctTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:15764/215‑1 (MQ=255) ctTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAggg < 1:516605/243‑1 (MQ=255) ctTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAg > 1:288663/1‑251 (MQ=255) ctTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAAGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGGGCCAAg > 1:754041/1‑251 (MQ=255) gAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGttt > 1:730824/1‑249 (MQ=255) gagTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgt > 1:63233‑M2/1‑247 (MQ=255) gagTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAg < 1:657752‑M2/248‑2 (MQ=255) gAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttac > 1:52326‑M2/1‑242 (MQ=255) aaCGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaa > 1:553490‑M2/1‑241 (MQ=255) cGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatg > 1:41699‑M2/1‑239 (MQ=255) cGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatg > 1:81856‑M2/1‑239 (MQ=255) cGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTCCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAAc < 1:425517/206‑1 (MQ=255) gTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:293278/175‑1 (MQ=255) tctcCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt < 1:314580‑M2/251‑31 (MQ=255) tctcCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt > 1:876185‑M2/1‑221 (MQ=255) cccGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttc < 1:351018‑M2/250‑33 (MQ=255) gACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc < 1:642876/159‑1 (MQ=255) gACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGc > 1:577318/1‑159 (MQ=255) caGCTGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttac > 1:729028‑M2/1‑210 (MQ=255) aaaCATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacag < 1:570037‑M2/222‑23 (MQ=255) cATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTGCGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCCTCCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaac > 1:40340‑M2/1‑197 (MQ=255) cATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacggctgtggtcgggaga < 1:894417‑M2/233‑37 (MQ=255) cATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgt > 1:803778‑M2/1‑197 (MQ=255) aTTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacggctgtggtcgggag > 1:149800‑M2/1‑196 (MQ=255) ttATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGcc > 1:802416/1‑172 (MQ=255) ttATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgta < 1:309034‑M2/198‑4 (MQ=255) ataATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt < 1:497779‑M2/223‑31 (MQ=255) ataATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt < 1:624899‑M2/223‑31 (MQ=255) taATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑ccc‑cccc‑cc > 1:672173/1‑128 (MQ=255) aaTTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt < 1:140671‑M2/221‑31 (MQ=255) atTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacggctgtggtcgggag < 1:805056‑M2/215‑36 (MQ=255) ttttAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTc > 1:387442/1‑167 (MQ=255) gCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgaga < 1:3273‑M2/251‑87 (MQ=255) gCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaa < 1:170041‑M2/175‑11 (MQ=255) gTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCCGC‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatg > 1:233502‑M2/1‑142 (MQ=255) gTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaat > 1:500474‑M2/1‑142 (MQ=255) ggATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaatatttcacttatct > 1:242776‑M2/1‑121 (MQ=255) gATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CCCTCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaata < 1:207560‑M2/238‑118 (MQ=255) aTCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgc < 1:20837‑M2/211‑97 (MQ=255) aTCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑CC‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaat < 1:459356‑M2/192‑78 (MQ=255) tGCTTAAAAATTGAGATTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAA‑‑‑‑‑‑‑‑‑‑‑GTAGTTACAATGTTTCGAACAGCTGTGGTTTCCCGACGCGTGCCGTTTATTTCATTAAATAACGAAAATTTAGGAATTGCGTGAGAAAACGCGCGCTATCCCGCTTATGAACAAATATTTCACTTATCTTATCGCACTCATTTTCGGCGCTGCCGGCgt > 1:626301/1‑251 (MQ=255) gagaTTTTCCCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAA‑‑‑‑‑‑‑‑‑‑‑GTAGTTACAATGTTTCGAACAGCTGTGGTTTCCCGACGCGTGCCGTTTATTTCATTAAATAACGAAAATTTAGGAATTGCGTGAGAAAACGCGCGCTATCCCGCTTATGAACAAATATTTCActtatctt > 1:219079/1‑210 (MQ=255) ccc‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaa > 1:48814‑M2/1‑67 (MQ=255) cc‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttc > 1:128512‑M2/1‑66 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaatatttcacttatcttatcgcactcattttcggcgctgccggcgtgtttgcctttgcacccttttattattg < 1:770048‑M2/251‑187 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaatatttcacttatcttatcgcactcattttcggcgctgccggcgtgtttgcctttgcacccttttatta > 1:250302‑M2/1‑65 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaatatttcacttatcttatcgcactcattttcggcgctgccggcgtgtttgcctttgcacccttttatta > 1:667157‑M2/1‑65 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgcttatgaacaaatatttcacttatct < 1:392493‑M2/194‑130 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtttcccgacgcgtgccgtttatttcattaaataacgaaaatttaggaattgcgtgagaaaacgcgcgctatcccgc > 1:401754‑M2/1‑65 (MQ=255) c‑c‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAgtagttacaatgtttcgaacagctgtggtt < 1:627409‑M2/95‑31 (MQ=255) | GAGGAAGAGGTTGTGGCGTAGTTTCTTCTTTCCCCTCTTTAGAAAAGAGGGGCGGGGGGAGAGTTGAACGATAACGGTGGCGCGCGTCTCCCGACCACAGCCGTTCGAAACATTATAATTCATTGATATTTTTAAATATCTTGCCTTCCTCCGTTTACGGGCAAGGTGCCCGAAGGGCGGAAGGGGGGATTTATCTTGATTTTTTCACAAGATCATGCTTAAAAATTGAGATTTT‑CCC‑CCCC‑C‑‑TCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAAGTAGTTACAATGTAGTTACAATGTTTCGAACAGCTGTGGTTTCCCGACGCGTGCCGTTTATTTCATTAAATAACGAAAATTTAGGAATTGCGTGAGAAAACGCGCGCTATCCCGCTTATGAACAAATATTTCACTTATCTTATCGCACTCATTTTCGGCGCTGCCGGCGTGTTTGCCTTTGCACCC > 1/959977‑960468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |