mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.0 revision fe39cd8f5880
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 312 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NODE_93 | 431 | 0 | G | C | 74.5% | 1263.2 / inf | 742 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 124 | 0 | A | G | 73.6% | 764.9 / inf | 639 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 138 | 0 | T | G | 71.9% | 651.4 / inf | 652 | intergenic (–/–) | –/– | –/– |
| * | NODE_93 | 489 | 0 | T | C | 71.9% | 1652.3 / inf | 902 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 316 | 0 | T | G | 71.9% | 1383.4 / inf | 768 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 132 | 0 | C | T | 71.8% | 588.0 / inf | 651 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 136 | 0 | G | A | 71.8% | 583.0 / inf | 653 | intergenic (–/–) | –/– | –/– |
| * | NODE_93 | 483 | 0 | C | T | 71.7% | 1391.6 / inf | 879 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 135 | 0 | T | C | 71.7% | 686.1 / inf | 654 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 78 | 0 | C | T | 71.2% | 216.4 / inf | 396 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 312 | 0 | G | C | 71.1% | 1103.5 / inf | 708 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 156 | 0 | C | G | 71.0% | 653.5 / inf | 652 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 309 | 0 | C | T | 71.0% | 956.0 / inf | 708 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 311 | 0 | G | A | 70.9% | 927.3 / inf | 708 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 186 | 0 | T | C | 69.9% | 735.4 / inf | 615 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 159 | 0 | C | G | 69.4% | 559.9 / inf | 612 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 144 | 0 | C | T | 69.2% | 441.5 / inf | 613 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 163 | 0 | A | G | 69.0% | 594.5 / inf | 617 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 147 | 0 | T | G | 68.9% | 511.3 / inf | 614 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 145 | 0 | A | G | 68.8% | 544.7 / inf | 613 | intergenic (–/–) | –/– | –/– |
| Marginal new junction evidence (lowest skew 10 of 223 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NODE_53 | = 108 | 493 (0.790) | 19 (0.350) +136 bp |
13/26 | 3.2 | 28.7% | intergenic (–/+165) | –/EcoliAnna_04105 | –/NAD(P)H‑flavin reductase |
| ? | NODE_53 | 152 = | 590 (0.940) | intergenic (–/+121) | –/EcoliAnna_04105 | –/NAD(P)H‑flavin reductase | |||||
| * | ? | NODE_2 | 243922 = | 222 (1.020) | 145 (0.510) +49 bp |
62/200 | 3.2 | 66.1% | intergenic (+15/+219) | EcoliAnna_00630/EcoliAnna_00631 | putative acyl‑CoA thioester hydrolase/hydratase |
| ? | NODE_61 | = 7785 | 0 (0.000) | intergenic (+152/–) | fadA/– | acetyl‑CoA C‑acyltransferase FadA/– | |||||
| * | ? | NODE_18 | 86488 = | NA (NA) | 167 (1.040) +60 bp |
64/178 | 3.2 | NA | intergenic (‑280/+1) | yqaB/EcoliAnna_02742 | fructose‑1‑phosphate/6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | NODE_6 | = 77 | NA (NA) | intergenic (‑1/+3) | EcoliAnna_01179/EcoliAnna_01180 | tRNA‑Arg/tRNA‑Ser | |||||
| * | ? | NODE_4 | 77345 = | 137 (0.660) | 104 (0.560) | 81/266 | 3.3 | 46.2% | coding (38/537 nt) | EcoliAnna_00891 | integrase |
| ? | NODE_4 | 79174 = | 120 (0.640) | coding (289/630 nt) | EcoliAnna_00894 | integrase | |||||
| * | ? | NODE_18 | = 190 | 234 (0.880) | 218 (0.670) | 79/218 | 3.4 | 71.8% | intergenic (–/+115) | –/clpB | –/ATP‑dependent chaperone ClpB |
| ? | NODE_61 | 41 = | 0 (0.000) | intergenic (–/+48) | –/hemG | –/menaquinone‑dependent protoporphyrinogen IX dehydrogenase | |||||
| * | ? | NODE_17 | = 67973 | 304 (1.020) | 44 (0.600) +112 bp |
25/74 | 3.4 | 36.8% | intergenic (‑80/+78) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| ? | NODE_17 | 67993 = | 306 (1.030) | intergenic (‑100/+58) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase | |||||
| * | ? | NODE_55 | = 14553 | 0 (0.000) | 99 (0.060) | 70/252 | 3.6 | 100% | intergenic (‑463/–) | narP/– | nitrate/nitrite response regulator protein NarP/– |
| ? | NODE_83 | 24 = | 0 (0.000) | coding (10/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||
| * | ? | NODE_1 | 74136 = | 194 (0.950) | 97 (0.500) +33 bp |
63/232 | 3.7 | 38.6% | noncoding (1/76 nt) | EcoliAnna_00080 | tRNA‑Gly |
| ? | NODE_17 | = 189 | 203 (0.680) | intergenic (+2/+268) | EcoliAnna_02550/queG | tRNA‑Gly/tRNA epoxyqueuosine(34) reductase QueG | |||||
| * | ? | NODE_66 | 1 = | 0 (0.000) | 143 (0.090) | 93/252 | 3.8 | 100% | intergenic (–/‑86) | –/EcoliAnna_04258 | –/hypothetical protein |
| ? | NODE_83 | 24 = | 0 (0.000) | coding (10/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||
| * | ? | NODE_10 | = 133230 | 0 (0.000) | 166 (0.100) | 97/258 | 4.1 | 100% | intergenic (‑4/–) | EcoliAnna_01911/– | N‑acetyltransferase/– |
| ? | NODE_83 | 21 = | 0 (0.000) | coding (7/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||