mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 2,843 | 0 | C | G | 49.1% | 16.1 / 47.1 | 80 | intergenic (‑86/‑144) | rro/tec | Repressor protein/tec |
| * | NC_004302 | 2,759 | 0 | C | T | 33.3% | 34.1 / 17.5 | 37 | intergenic (‑2/‑228) | rro/tec | Repressor protein/tec |
| * | NC_004302 | 1,914 | 0 | T | C | 27.3% | 217.4 / 114.6 | 284 | intergenic (‑54/+7) | r1tp02/rro | ORF2/Repressor protein |
| * | NC_004302 | 15,047 | 1 | . | A | 21.8% | 101.5 / 21.2 | 55 | intergenic (+140/‑7) | r1tp26/r1tp27 | HNH endonuclease/Structural protein |
| * | NC_004302 | 5,716 | 1 | . | A | 20.0% | 107.6 / 18.6 | 55 | coding (807/834 nt) | r1tp09 | ORF9 |
| * | NC_004302 | 6,967 | 0 | C | T | 20.0% | 87.8 / 12.6 | 57 | Q25* (CAG→TAG) | r1tp11 | ORF11 |
| * | NC_004302 | 7,392 | 1 | . | A | 20.0% | 138.4 / 24.7 | 70 | coding (498/735 nt) | r1tp11 | ORF11 |