| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 2,843 | 0 | C | G | 49.1% | 16.1 / 47.1 | 80 | intergenic (‑86/‑144) | rro/tec | Repressor protein/tec |
| Reads supporting (aligned to +/- strand): ref base C (27/0); new base G (26/0); total (80/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTATAATTAATTC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTACAC > NC_004302/2830‑2915 | cacagagttaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAAt > 1:12754456/8‑75 (MQ=255) tataaggtaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAAt > 1:5191427/8‑75 (MQ=255) cgagaattaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:9837380/5‑75 (MQ=255) agtgttttaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:10630706/7‑75 (MQ=255) tttaaacaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:1719719/8‑75 (MQ=255) ttaccgtaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:6246992/7‑75 (MQ=255) tgtgtttaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:789744/6‑75 (MQ=255) tggatgtaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:4114685/7‑75 (MQ=255) tgcatttaaatC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAAtt > 1:1126170/6‑74 (MQ=255) tgaaattaaatA‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:3206386/4‑75 (MQ=255) tctgtttaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:16381258/6‑75 (MQ=255) tctgtttaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:8307251/6‑75 (MQ=255) tataATTAA‑‑C‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:8938833/1‑75 (MQ=255) tagtaaaaattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:7072984/8‑75 (MQ=255) tagtaaaaattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:932814/8‑75 (MQ=255) gtttaccaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:15248593/8‑75 (MQ=255) gtgtattaatt‑‑aT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:15221644/5‑75 (MQ=255) gtggattaatt‑‑aT‑AAAGCCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:10973033/5‑75 (MQ=255) gtaagcgaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:12175765/8‑75 (MQ=255) ggtccgcaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:14360316/8‑75 (MQ=255) ggattaaaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:10699042/8‑75 (MQ=255) gatttggaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:9223474/8‑75 (MQ=255) gagggagaattA‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:14219608/8‑75 (MQ=255) gactataaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:5168416/8‑75 (MQ=255) ctatattaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:12984344/5‑75 (MQ=255) cgctgataataC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:5799593/7‑75 (MQ=255) cgctgataataC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:11657704/7‑75 (MQ=255) cgcatttaatt‑‑AT‑AAAGTCGAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:3198742/6‑75 (MQ=255) catttggaattA‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:1449587/8‑75 (MQ=255) atttatcaattA‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:7032196/8‑75 (MQ=255) atacataaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:12811848/8‑75 (MQ=255) aggtcttaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:9037928/6‑75 (MQ=255) agagaacaattG‑AT‑AAAGCCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:2942881/8‑75 (MQ=255) acggtctaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:2426443/7‑75 (MQ=255) aattgggaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:1318570/8‑75 (MQ=255) aatcgcaaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:12601584/8‑75 (MQ=255) aaatgttaatta‑aT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATg > 1:5865821/6‑75 (MQ=255) ttgtttaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:7443778/5‑75 (MQ=255) tattttaatt‑‑AT‑AAAGTCAAACAACCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:4905077/5‑75 (MQ=255) ggagtaaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:12573539/7‑75 (MQ=255) gctaaaaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:8763925/7‑75 (MQ=255) gcgtggaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:16884425/7‑75 (MQ=255) gcgtggaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:16864240/7‑75 (MQ=255) atacttaagtC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:7240715/5‑75 (MQ=255) aggattaa‑tc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:13937104/4‑75 (MQ=255) aggattaa‑tc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:11710058/4‑75 (MQ=255) agagtgaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:5076928/7‑75 (MQ=255) aatagtaataC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGAACGGCGGACGGAACAGGCTC‑AAATGa > 1:5918422/6‑75 (MQ=255) aaatacaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:6828847/7‑75 (MQ=255) aaaattaa‑tc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:13445044/3‑75 (MQ=255) aaaattaa‑tc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:12043068/3‑75 (MQ=255) ttatcaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:10859569/6‑75 (MQ=255) ttagttgttC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:14986192/8‑75 (MQ=255) ttagttgttC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:6706127/8‑75 (MQ=255) ttaataatta‑at‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:16677057/5‑75 (MQ=255) tgttggattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:6050934/7‑75 (MQ=255) tgtggaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:3154040/6‑75 (MQ=255) tgcttaattC‑AGAAAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑aaaatg > 1:1238256/4‑72 (MQ=255) tgcttaattC‑AGAAAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑aaaatg > 1:4259161/4‑72 (MQ=255) tagattattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:15635406/7‑75 (MQ=255) gtgaagattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:16783384/7‑75 (MQ=255) ggggcaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:15926316/6‑75 (MQ=255) ggggcaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:3968240/6‑75 (MQ=255) ggcgaaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:2073529/6‑75 (MQ=255) gagtgtgttC‑AA‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:9425736/8‑75 (MQ=255) gagtaaattA‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:10101703/6‑75 (MQ=255) gaggtggttC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:10139749/8‑75 (MQ=255) ctgttaatt‑‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACg > 1:15001721/4‑75 (MQ=255) cgtttggttC‑ATAAAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:11629565/8‑75 (MQ=255) cgagcaattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:15959269/6‑75 (MQ=255) ccttcaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:11396510/6‑75 (MQ=255) cagacaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:10968641/6‑75 (MQ=255) atgttaatta‑aT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:12817120/4‑75 (MQ=255) ataagaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGTCGGAACAGGCTC‑AAAGGAc > 1:5808952/6‑75 (MQ=255) agttatgttC‑AT‑‑AAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACg > 1:10423709/8‑75 (MQ=255) agggaaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:15846001/6‑75 (MQ=255) actgtaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:7522946/5‑75 (MQ=255) acgtgaattC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:7814339/6‑75 (MQ=255) aattaaattG‑AT‑AAAGTCAAACAAGCGAACAAATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:11391736/6‑75 (MQ=255) aattaaattG‑AT‑AAAGTCAAACAAGCGAACAAATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGa > 1:14078888/6‑75 (MQ=255) aactgagttC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:4920047/8‑75 (MQ=255) aaatttattT‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑aaaatga > 1:14969506/2‑71 (MQ=255) gaccaattG‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACg > 1:10772221/5‑75 (MQ=255) cgagccctC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACg > 1:7434326/8‑75 (MQ=255) atataattCGAT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGAc > 1:9185596/4‑75 (MQ=255) tgctttac‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACgg > 1:12964044/8‑75 (MQ=255) cggaattC‑AT‑‑AAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGt > 1:13878609/4‑75 (MQ=255) aggatcgc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACgg > 1:7502452/8‑75 (MQ=255) gtgaatC‑AT‑GAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGt > 1:16939216/6‑75 (MQ=255) ttctgc‑AT‑AAAGACAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGCAACAGGCTC‑AAATGACGGTa > 1:11155319/6‑75 (MQ=255) gatggc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTa > 1:5995016/6‑75 (MQ=255) ccgatC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACTGGCTC‑AAATGACGGTa > 1:1636956/5‑75 (MQ=255) ccgatC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTa > 1:6248425/5‑75 (MQ=255) atgagc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTa > 1:15150102/6‑75 (MQ=255) tcaac‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTac > 1:11914260/5‑75 (MQ=255) atgc‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTaca > 1:9982375/4‑75 (MQ=255) gac‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTacac > 1:10723822/3‑75 (MQ=255) gac‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGCTacac > 1:14844591/3‑75 (MQ=255) aac‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTCAAAATGACGGTaca > 1:3797528/3‑75 (MQ=255) | GTTATAATTAATTC‑AT‑AAAGTCAAACAAGCGAAC‑AATCATGGAGCATTCAGTACGGCGGACGGAACAGGCTC‑AAATGACGGTACAC > NC_004302/2830‑2915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |