BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_004302	1,914	0	T	C	27.3%	217.4 / 114.6	284	intergenic (‑54/+7)	r1tp02/rro	ORF2/Repressor protein
Reads supporting (aligned to +/- strand): ref base T (1/156); new base C (0/59); total (1/283)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 352 total aligned reads displayed.

AGGAGTTTTTCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAGCTGCTGGATTGTCTTGTGTAG  >  NC_004302/1840‑1982

aGGAGTTTTTCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGAC‑‑TTG‑TCGt‑a‑t‑aa                                                                       <  1:10809657/75‑2 (MQ=255)

  gAGTTTTTCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑tcc                                                                        <  1:11873343/75‑3 (MQ=255)

   aGTTTTTTCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑t‑agt                                                                      <  1:10639624/75‑3 (MQ=255)

   aGTTTTTCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑tcta                                                                       <  1:2824766/75‑4 (MQ=255)

     tttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑tgcata                                                                     <  1:8661799/75‑6 (MQ=255)

     tttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑t‑aaaaa                                                                    <  1:14821359/75‑5 (MQ=255)

     tttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑G‑A‑t‑tag                                                                  <  1:7228440/75‑3 (MQ=255)

      ttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑tttgaca                                                                    <  1:16852840/75‑7 (MQ=255)

      ttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑ttgtttt                                                                    <  1:9814383/75‑7 (MQ=255)

      ttttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑T‑T‑A‑t‑tcgg                                                                 <  1:13943220/75‑4 (MQ=255)

       tttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tcaca                                                                <  1:12382566/75‑5 (MQ=255)

       tttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCCT‑a‑t‑a‑tcttca                                                                 <  1:17175216/75‑6 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑t‑aggacaac                                                                 <  1:10041740/75‑8 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGt‑a‑t‑acatagcc                                                                 <  1:1525623/75‑8 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑c‑t‑a‑tatcgat                                                                <  1:1090669/75‑7 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tatcaac                                                                <  1:4788764/75‑7 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑C‑TTatat                                                               <  1:13450552/75‑4 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑ttttaa                                                               <  1:15889879/75‑5 (MQ=255)

        ttCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑t‑tttata                                                               <  1:11284982/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGTAA‑T‑A‑t‑tttctc                                                               <  1:14105234/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGTAA‑T‑A‑t‑ttcctc                                                               <  1:8574537/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGTAA‑T‑A‑T‑TTagcc                                                               <  1:15576213/75‑4 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGTAA‑T‑A‑T‑TTAAtg                                                               <  1:9437686/75‑2 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tgcacgtc                                                               <  1:14979789/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tgatgtcc                                                               <  1:16522907/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tctatcag                                                               <  1:15073423/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tccaattc                                                               <  1:4335538/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tcataata                                                               <  1:10413719/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tatttcac                                                               <  1:11407749/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑a‑t‑a‑tacagggg                                                               <  1:16649999/75‑8 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑ACT‑A‑t‑tttaca                                                               <  1:3747631/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑ACT‑A‑T‑TTatgg                                                               <  1:16999090/75‑4 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑TGA‑T‑TTaacc                                                               <  1:5716026/75‑3 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑t‑t‑ttgccct                                                              <  1:3576028/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑t‑t‑ttcctaa                                                              <  1:16291902/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑C‑T‑TTaggtc                                                              <  1:13287909/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑‑‑T‑TTaacgat                                                             <  1:167435/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑T‑T‑TTAAttg                                                              <  1:102276/75‑2 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tttacac                                                              <  1:9054226/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tgtcttt                                                              <  1:273546/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tgccaag                                                              <  1:16181717/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tcgcttt                                                              <  1:1879341/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tccggta                                                              <  1:7636804/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tccaaag                                                              <  1:15649009/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tccaaac                                                              <  1:2071679/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tcaaact                                                              <  1:1788820/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tatataa                                                              <  1:1248468/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑tagcttc                                                              <  1:5970640/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑t‑ttcatcc                                                              <  1:9175291/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑t‑tgtcaaa                                                              <  1:7375422/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑t‑tcatcaa                                                              <  1:14633046/75‑7 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑T‑TTattct                                                              <  1:8362034/75‑5 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTactcat                                                             <  1:3959761/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTaccaca                                                             <  1:646155/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTacacca                                                             <  1:1001854/75‑6 (MQ=255)

         tCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TT‑ATtata                                                            <  1:10156105/75‑1 (MQ=255)

         cccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑G‑TTactat                                                              <  1:6620919/74‑5 (MQ=255)

          ccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACATTTGCTCGT‑A‑C‑A‑t‑tgcccta                                                              <  1:12821897/75‑7 (MQ=255)

          ccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑t‑t‑ttgaagac                                                             <  1:5260621/75‑7 (MQ=255)

          ccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑A‑TTactcca                                                             <  1:6553064/75‑6 (MQ=255)

          ccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑t‑ttgggtaa                                                             <  1:11071075/75‑7 (MQ=255)

          ccATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCG‑‑A‑T‑A‑T‑TTacgatat                                                            <  1:11549823/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGTAA‑T‑A‑t‑ttggtact                                                             <  1:7164816/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑ACT‑A‑t‑ttgcgtcc                                                             <  1:15981276/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑T‑T‑TTacactac                                                            <  1:2244217/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑t‑tttatatag                                                            <  1:9156180/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑t‑ttcacagaa                                                            <  1:6821827/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑TATTAAtcat                                                             <  1:5608179/75‑4 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑C‑TTataactg                                                            <  1:11186329/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑‑‑T‑TTaaaccaaa                                                           <  1:16029985/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑T‑T‑TTAataata                                                            <  1:610923/75‑1 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑ttttataag                                                            <  1:3831268/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑ttgttcttg                                                            <  1:13661173/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑t‑ttcgacgca                                                            <  1:75939/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑T‑TTatacagt                                                            <  1:14065893/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑C‑A‑T‑TTaaaatac                                                            <  1:13035475/75‑6 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑T‑TTatacgtc                                                            <  1:12905876/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑A‑A‑T‑TTaaccttc                                                            <  1:7859234/75‑6 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTattctttc                                                           <  1:8201072/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTatgactta                                                           <  1:9347161/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTatatacac                                                           <  1:6284728/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTataccgaa                                                           <  1:4518103/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTactcttcg                                                           <  1:15366880/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTacgttacc                                                           <  1:5315550/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTacggccca                                                           <  1:12132289/75‑8 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTaagtaata                                                           <  1:7973000/75‑7 (MQ=255)

           cATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑‑‑A‑T‑TTaacccctg                                                           <  1:1486593/75‑7 (MQ=255)

            aTTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑T‑T‑TTaaagcatt                                                           <  1:3128541/75‑7 (MQ=255)

             tttttCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑ATT‑TTAATtacct                                                           <  1:3305879/75‑4 (MQ=255)

                                   cTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTAATGTGACaatat                                    <  1:14448206/75‑5 (MQ=255)

                                         tAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCttctcgca                              <  1:12668884/75‑7 (MQ=255)

                                           gCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAAGTTGCC‑Cataa                           <  1:8843225/75‑4 (MQ=255)

                                                tAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCCACAATcacaa                       <  1:517760/75‑2 (MQ=255)

                                                   cGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATcaagatgca                   <  1:12293876/75‑8 (MQ=255)

                                                     agaATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAgctctaa                 <  1:12941450/75‑5 (MQ=255)

                                                       aaTCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCTGAgctgcccaa               <  1:15466996/75‑5 (MQ=255)

                                                          cAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAgctgccattacc            <  1:7429921/75‑8 (MQ=255)

                                                           aaGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAGctcctgccagat           <  1:5033297/75‑7 (MQ=255)

                                                                    gCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAGCTGCTGGATTGTCtttattt   <  1:2385702/75‑6 (MQ=255)

                                                                     cTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAGCTGCTGGATTGTCtgctattc  <  1:6944489/75‑8 (MQ=255)

AGGAGTTTTTCCATTTTTCATAATGTTTATATTTCCTAACCTAGCTTTTAACGAGAATCAAGACA‑TTGCTCGT‑A‑T‑A‑T‑TTAATTATAAATCAATTTCTACTTTGACAGCTTGCC‑CAATCACAGCTGCTGGATTGTCTTGTGTAG  >  NC_004302/1840‑1982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`