| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_004302 | 8,712 | (TGAATT)3→2 | coding (21‑26/396 nt) | r1tp14 → | ORF14 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_004302 | 8696 | 8701 | 6 | 117 [0] | [0] 114 | r1tp13 r1tp14 |
ORF13 ORF14 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | 8702 = | 0 (0.000) | 97 (1.740) | 5/116 | 0.2 | 100% | coding (165/165 nt) coding (11/396 nt) |
r1tp13 r1tp14 |
ORF13 ORF14 |
| ? | NC_004302 | = 8695 | 0 (0.000) | coding (158/165 nt) coding (4/396 nt) |
r1tp13 r1tp14 |
ORF13 ORF14 |
|||||
Only 100 of 114 total aligned reads displayed.
GAGATTATTTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAAATTTGAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAGGGTA > NC_004302/8628‑8770 | taggttgagattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaa < 1:1744131‑M1/1‑1 (MQ=255)taataggagattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaa < 1:1210008‑M1/1‑1 (MQ=255)ataagtcagattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaa < 1:15672065‑M1/1‑1 (MQ=255) acttataattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑t < 1:12850289‑M1/3‑1 (MQ=255) catgagattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tt < 1:7252403‑M1/4‑1 (MQ=255) catgagattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tt < 1:11979382‑M1/4‑1 (MQ=255) tcttattttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaa < 1:10169185‑M1/8‑1 (MQ=255) agattatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaa < 1:1072540‑M1/8‑1 (MQ=255) attgatgtttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaat < 1:2643785‑M1/9‑1 (MQ=255) aatgtaatttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaat < 1:14979685‑M1/9‑1 (MQ=255) catatttttattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaatt < 1:1829382‑M1/10‑1 (MQ=255) tagggcttagtcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaattt < 1:12815919‑M1/11‑1 (MQ=255) agagtggtattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaattt < 1:8880959‑M1/11‑1 (MQ=255) gattatttattttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaaa‑tttgaatttg < 1:11312329‑M1/12‑1 (MQ=255) acagtattcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑tttgaatttgaa < 1:2469299‑M1/14‑1 (MQ=255) gaagtcttaatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTg < 1:10078206‑M1/17‑1 (MQ=255) atcatctaaacgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTgg < 1:12709925‑M1/18‑1 (MQ=255) aatagatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATa < 1:2996543‑M1/21‑1 (MQ=255) tatatccgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaa < 1:5505960‑M1/22‑1 (MQ=255) gatagttgcagggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaa < 1:2346593‑M1/22‑1 (MQ=255) tggactacatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaaa < 1:6633790‑M1/23‑1 (MQ=255) agtatcgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaaa < 1:13404608‑M1/23‑1 (MQ=255) aagtaaacatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaaa < 1:7388847‑M1/23‑1 (MQ=255) ttacgctatggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATaaaa < 1:5112602‑M1/24‑1 (MQ=255) cggccgcatggctcagatgcctgcaattgttagatttggagaagcgagtgaAAATTTGAATTTGAATTGGATaaa < 1:10729400‑M1/24‑1 (MQ=255) ttgcagcgctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGc < 1:12097056‑M1/27‑1 (MQ=255) aacgtgtgctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGc < 1:4378375‑M1/27‑1 (MQ=255) tggggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCaa < 1:13124907‑M1/30‑1 (MQ=255) ttttgacagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAac < 1:6738733‑M1/31‑1 (MQ=255) atatctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAac < 1:1875736‑M1/31‑1 (MQ=255) ttgggcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:12905338‑M1/32‑1 (MQ=255) tcgaggtgatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:11970231‑M1/32‑1 (MQ=255) gaagtcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:4844094‑M1/32‑1 (MQ=255) gaagcgagaggcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:14488082‑M1/32‑1 (MQ=255) gaagcgagaggcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:14467379‑M1/32‑1 (MQ=255) aaaggagatgacctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAact < 1:782549‑M1/32‑1 (MQ=255) tgttcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAacta < 1:3664359‑M1/33‑1 (MQ=255) tattgagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAacta < 1:11876428‑M1/33‑1 (MQ=255) ggctcagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAacta < 1:12753820‑M1/33‑1 (MQ=255) tgcaacatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactac < 1:13510436‑M1/34‑1 (MQ=255) gtaaacatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactac < 1:14752962‑M1/34‑1 (MQ=255) gtaaacatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactac < 1:9875109‑M1/34‑1 (MQ=255) caattcaatgccgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactac < 1:5325995‑M1/34‑1 (MQ=255) caattcaatgccgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactac < 1:16899403‑M1/34‑1 (MQ=255) tacaaatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAactact < 1:6645878‑M1/35‑1 (MQ=255) gttcatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTc < 1:5812048‑M1/36‑1 (MQ=255) atgatgccatgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTc < 1:16004852‑M1/36‑1 (MQ=255) ctgatgcgtgaaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTca < 1:12861202‑M1/37‑1 (MQ=255) cagttgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAa‑tgccaaccctggt > 1:14010002‑M1/39‑69 (MQ=255) cagttgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAa‑tgccaaccctggt > 1:14029950‑M1/39‑69 (MQ=255) cagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTca < 1:4304052‑M1/37‑1 (MQ=255) cagatgcctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTca < 1:2523183‑M1/37‑1 (MQ=255) tgattctgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTcagc < 1:6984612‑M1/39‑1 (MQ=255) taaaaatcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTcagca < 1:8136755‑M1/40‑1 (MQ=255) taaaaatcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTcagca < 1:8261848‑M1/40‑1 (MQ=255) gattatgcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTcagca < 1:2043679‑M1/40‑1 (MQ=255) ctactgcaaatgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTcagcag < 1:2336678‑M1/41‑1 (MQ=255) ttggtaaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCagcagc < 1:16253598‑M1/42‑1 (MQ=255) ttgtaattgattagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAgcagca < 1:10948989‑M1/43‑1 (MQ=255) atttaaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTActcggcagat < 1:3611460‑M1/43‑3 (MQ=255) agtaaaattattagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAgcagca < 1:10980485‑M1/43‑1 (MQ=255) tcatatctgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaa < 1:12627381‑M1/44‑1 (MQ=255) taacaattggtagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaa < 1:11121111‑M1/44‑1 (MQ=255) gtctggtgttatgatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaa < 1:1884039‑M1/44‑1 (MQ=255) ggaaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTActcagcagctaa < 1:16547906‑M1/45‑4 (MQ=255) aggcgttgtaagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaaa < 1:2655379‑M1/45‑1 (MQ=255) gcaattgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACATAGCAgcaaga < 1:14503229‑M1/46‑3 (MQ=255) attgttgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaaaa < 1:6737950‑M1/46‑1 (MQ=255) tttctcttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAT‑TGCCAACTACTCAGCAGCaaaaa < 1:12732534‑M1/47‑1 (MQ=255) gtagtcgtagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaaaaa < 1:11017448‑M1/47‑1 (MQ=255) gaggtgttagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCaaaaa < 1:11610239‑M1/47‑1 (MQ=255) cgatgttaaatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑g < 1:16905833‑M1/48‑1 (MQ=255) tgaacgggatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑gg < 1:1319987‑M1/49‑1 (MQ=255) gagatattttgagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCAt < 1:7563525‑M1/52‑1 (MQ=255) atggtgtttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCAt < 1:8100980‑M1/52‑1 (MQ=255) cgagatttggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCAtt < 1:11593838‑M1/53‑1 (MQ=255) caatgcttggggaagcgagtgaAAATTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCAt < 1:12784898‑M1/53‑1 (MQ=255) tagatttggagaagcgagtgaAA‑TTTGAATTTGAATTTGATAAAA‑TGCCAACTACTCAGCAGcaaaaa‑‑gacagat > 1:3605209‑M1/22‑69 (MQ=255) gttggtggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTaa < 1:5856610‑M1/55‑1 (MQ=255) aggatggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTaaa < 1:10669220‑M1/56‑1 (MQ=255) atgtggagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTaaaa < 1:9926583‑M1/57‑1 (MQ=255) atgggtagaaacgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAAAAGGCATTaa < 1:13302526‑M1/57‑1 (MQ=255) tggagaaggtcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTaaaaa < 1:1506867‑M1/58‑1 (MQ=255) agttagggcgagttgaAA‑TTTGAATTTGAATTGGATAAAAATGCCAACTACTCAGCAGCAAAAA‑‑GGCATTaaaaa < 1:10125610‑M1/59‑1 (MQ=255) ttgagaaacgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAg < 1:7261124‑M1/60‑1 (MQ=255) gagagaagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAg < 1:12350011‑M1/60‑1 (MQ=255) gaaatagcgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGt < 1:3605824‑M1/61‑1 (MQ=255) tggatgggagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTg < 1:4876838‑M1/62‑1 (MQ=255) taatggggagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTg < 1:15045412‑M1/62‑1 (MQ=255) gtttttagagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTg < 1:7462869‑M1/62‑1 (MQ=255) aagagaagcagtaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTg < 1:1778477‑M1/62‑1 (MQ=255) aggtatgagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGa < 1:8845869‑M1/63‑1 (MQ=255) ggagtttgaGA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAATGAagc < 1:3440864‑M1/66‑2 (MQ=255) cgttttcgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAgg < 1:13660285‑M1/66‑1 (MQ=255) acggactgaAA‑GTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAgg < 1:10896509‑M1/66‑1 (MQ=255) aatacatgaGA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAgg < 1:3728548‑M1/66‑1 (MQ=255) tgccatgaAT‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAggg < 1:14263958‑M1/67‑1 (MQ=255) taatgtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAggg < 1:6382196‑M1/67‑1 (MQ=255) gagagtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAA‑GTGAAGGGt < 1:3769158‑M1/67‑1 (MQ=255) gtgtgaAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAGGGTa < 1:12767443‑M1/69‑1 (MQ=255) | GAGATTATTTTTATTCTTAATCGCATGGCTCAGATGCCTGCAATTGTTAGATTTGGAGAAGCGAGTGAAATTTGAA‑TTTGAATTTGAATTGGATAAAA‑TGCCAACTACTCAGCAGCAAAAA‑‑GGCATTAAAAAAGTGAAGGGTA > NC_004302/8628‑8770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |