mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,474 | 0 | T | A | 79.6% | 88.0 / 19.4 | 50 | intergenic (+478/‑105) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,482 | 0 | C | T | 78.3% | 78.4 / 11.4 | 46 | intergenic (+486/‑97) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,301 | 1 | . | G | 76.7% | 52.7 / 21.2 | 30 | intergenic (+305/‑278) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 794 | 0 | A | . | 73.0% | 478.6 / inf | 392 | coding (515/717 nt) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 762 | 0 | T | C | 72.6% | 218.6 / 103.1 | 197 | D161D (GAT→GAC) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 711 | 0 | A | G | 69.8% | 66.3 / 36.4 | 63 | K144K (AAA→AAG) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,330 | 0 | T | C | 66.7% | 24.2 / 15.9 | 30 | intergenic (+334/‑249) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,502 | 0 | C | T | 66.7% | 27.9 / 14.2 | 31 | intergenic (+506/‑77) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,461 | 0 | T | . | 53.3% | 117.6 / 152.8 | 75 | intergenic (+465/‑118) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,464 | 0 | A | G | 53.3% | 12.8 / 70.4 | 75 | intergenic (+468/‑115) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 705 | 0 | A | T | 50.0% | ‑5.9 / 23.1 | 20 | A142A (GCA→GCT) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,462 | 0 | T | A | 48.0% | 11.0 / 91.2 | 75 | intergenic (+466/‑117) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,463 | 0 | A | G | 46.7% | 3.4 / 76.4 | 75 | intergenic (+467/‑116) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,373 | 0 | C | T | 43.5% | 9.2 / 58.1 | 62 | intergenic (+377/‑206) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,366 | 0 | T | . | 38.9% | 22.4 / 39.3 | 49 | intergenic (+370/‑213) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,361 | 0 | A | C | 30.4% | 54.0 / 35.1 | 47 | intergenic (+365/‑218) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,357 | 1 | . | T | 28.3% | 62.4 / 49.5 | 46 | intergenic (+361/‑222) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 758 | 0 | A | G | 27.9% | 232.8 / 105.3 | 197 | D160G (GAT→GGT) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 757 | 0 | G | A | 27.4% | 237.1 / 102.0 | 197 | D160N (GAT→AAT) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,352 | 0 | G | A | 23.6% | 68.8 / 20.0 | 55 | intergenic (+356/‑227) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |