Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	1	1,308,177	Δ11 bp	intergenic (+148597/+112750)	unknown → / ← unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	1	1308177	1308187	11	32 [0]	[0] 32	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1308176	0 (0.000)	32 (0.360)	23/430	2.4	100%	intergenic (+148596/+112761)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT
	?	1	1308188 =	0 (0.000)					intergenic (+148608/+112749)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

AAGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTCTTAACGTATTGATTTAAACAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTGGTTTTAAACTTAGTTTAAACTAAGTTTAACGCTAAGGGGTAAGACTAAAGATTTACACCCAAGTTTAACCTAATCTTTAAATTATTCAAATGCAAAAGCGAGGAACTATGAAAAAAAAGGATTGGAGTAGAAAGCGGATTGTTTACGAGTTACATGAGCGAAACATTACATTGCATTCGCTTTCAGTTAAGTCTGGATTGGCTCCCTCCACATTAAAAAATGCATTGCGAGTTAGTTATCCGAAGG  >  1/1307929‑1308421                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                      aaGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtt                                                                                                                                                                                                                                                    <  1:486843‑M1/251‑4 (MQ=255)        cTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaacta                                                                                                                                                                                                                                             >  1:117822‑M1/1‑241 (MQ=255)                         tttGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaagggg                                                                                                                                                                                                                            <  1:101781‑M1/251‑28 (MQ=255)                               ttttttAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:299749‑M1/251‑34 (MQ=255)                                                                            cAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaa                                                                                                                                                                         <  1:364573‑M1/251‑79 (MQ=255)                                                                                                    ctctCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatga                                                                                                                                                    >  1:258807‑M1/1‑149 (MQ=255)                                                                                                                             gTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggat                                                                                                                        >  1:142910‑M1/1‑124 (MQ=255)                                                                                                                                               aaaCTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:900553‑M1/139‑34 (MQ=255)                                                                                                                                                           aTTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattac                                                                                          <  1:741275‑M1/251‑158 (MQ=255)                                                                                                                                                            tttACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:174772‑M1/126‑34 (MQ=255)                                                                                                                                                                             cGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatg                                                                                                       >  1:17737‑M1/1‑76 (MQ=255)                                                                                                                                                                                                    atTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacct                                                                                                                                                                                            <  1:335256‑M1/112‑60 (MQ=255)                                                                                                                                                                                                       tCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacat                                              >  1:748594‑M1/1‑50 (MQ=255)                                                                                                                                                                                                       tCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacat                                              >  1:654766‑M1/1‑50 (MQ=255)                                                                                                                                                                                                                                  atttaAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      >  1:546691‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                      aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaa               >  1:87221‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                                      aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaa               >  1:696710‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                                      aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctc                                                       <  1:441461‑M1/211‑193 (MQ=255)                                                                                                                                                                                                                                      aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcag                                                                         <  1:815028‑M1/193‑175 (MQ=255)                                                                                                                                                                                                                                         cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaaggg            >  1:107266‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                         cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacc                                                                                                                                                                                             >  1:406427‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                         cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacc                                                                                                                                                                                             >  1:265028‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                           aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaaggg            <  1:601089‑M1/249‑236 (MQ=255)                                                                                                                                                                                                                                           aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattac                                                                                          <  1:590361‑M1/171‑158 (MQ=255)                                                                                                                                                                                                                                           aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatg                                                                                                       >  1:794361‑M1/1‑14 (MQ=255)                                                                                                                                                                                                                                                 gACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacat                                                                                        >  1:366964‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                                  aCTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgag                                                                                                              <  1:859599‑M1/144‑138 (MQ=255)                                                                                                                                                                                                                                                   cTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaagggagaatggatc  <  1:812091‑M1/251‑246 (MQ=255)                                                                                                                                                                                                                                                   cTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:258146‑M1/39‑34 (MQ=255)                                                                                                                                                                                                                                                        ggtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaa                                        <  1:224090‑M1/208‑208 (MQ=255)                                                                                                                                                                                                                                                        ggtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgag                                                                                                              <  1:601234‑M1/138‑138 (MQ=255)                                                                                                                                                                                                                                                        ggtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgag                                                                                                              >  1:316863‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                      AAGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTCTTAACGTATTGATTTAAACAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTGGTTTTAAACTTAGTTTAAACTAAGTTTAACGCTAAGGGGTAAGACTAAAGATTTACACCCAAGTTTAACCTAATCTTTAAATTATTCAAATGCAAAAGCGAGGAACTATGAAAAAAAAGGATTGGAGTAGAAAGCGGATTGTTTACGAGTTACATGAGCGAAACATTACATTGCATTCGCTTTCAGTTAAGTCTGGATTGGCTCCCTCCACATTAAAAAATGCATTGCGAGTTAGTTATCCGAAGG  >  1/1307929‑1308421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.