New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	1009324 =	4 (0.050)	22 (0.300)	15/376	3.2	92.6%	intergenic (+172/‑89)	unknown/unknown	Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72)
	?	1	= 1009313	0 (0.000)					intergenic (+161/‑100)	unknown/unknown	Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72)
Rejected: Coverage evenness skew score above cutoff.

TTCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTAAAGCTCTTTTCCCGAATTGTTTCGATGTAAGCGGTCAATTTTTATTAGAAAAATT  >  1/1009075‑1009534                                                                                                                                                                                                                                               |                                                                                                                                                                                                                              ttCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCATTAATAGGAGTAAAAAATATGcttgccttgcct                                                                                                                                                                                                                   <  1:483973/251‑1 (MQ=255)                       aCATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaacta                                                                                                                                                                                              <  1:109985/250‑7 (MQ=255)                                                             ttattGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTaaaa                                                                                                                                             >  1:762537/1‑251 (MQ=255)                                                                         gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaact                                                                                                                                                                                               <  1:563741/199‑6 (MQ=255)                                                                         gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCggag                                                                                                                                 >  1:651693/1‑251 (MQ=255)                                                                         gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCggag                                                                                                                                 >  1:515156/1‑251 (MQ=255)                                                                         gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCAAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaac                                                                                                                                                                                                >  1:446700/1‑194 (MQ=255)                                                                             aGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCAc                                                                                                                                                        >  1:230110/1‑224 (MQ=255)                                                                                      aaTTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgcc                                                                                                                                                                                                                    >  1:416748/1‑165 (MQ=255)                                                                                                   gAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACtttt                                                                                                        >  1:99769/1‑250 (MQ=255)                                                                                                             tAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaac                                                                                                                                                                                                >  1:82494/1‑158 (MQ=255)                                                                                                                   gAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcct                                                                                                                                                                                                    >  1:125110/1‑152 (MQ=255)                                                                                                                   gAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCAc                                                                                                                                                        <  1:509339/186‑1 (MQ=255)                                                                                                                       catcatTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGc                                                                                   <  1:320664/251‑1 (MQ=255)                                                                                                                              cAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAAct                                                                              >  1:330672/1‑249 (MQ=255)                                                                                                                                     tttATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAAc                                                                     <  1:697985/251‑1 (MQ=255)                                                                                                                                                                ttCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagctc                                          <  1:137326/251‑16 (MQ=255)                                                                                                                                                                               cTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagc                                            <  1:275169/234‑14 (MQ=255)                                                                                                                                                                                   atatTGTATAAAACAAAGTACACTTTGTACTTGATAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTCATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagc                                            >  1:34500/1‑217 (MQ=255)                                                                                                                                                                                   atatTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATaaa                                                                                                                           >  1:42710/1‑151 (MQ=255)                                                                                                                                                                                   atatTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcga                       >  1:22655‑M1/1‑201 (MQ=255)                                                                                                                                                                                        gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgcct                                                                                                                                                                                                         <  1:79286/78‑1 (MQ=255)                                                                                                                                                                                        gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaa                  >  1:170108‑M1/1‑196 (MQ=255)                                                                                                                                                                                        gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagctcttttcc                                    <  1:734897/233‑22 (MQ=255)                                                                                                                                                                                                cAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaa          >  1:511262‑M1/1‑188 (MQ=255)                                                                                                                                                                                                    gTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTAcc                                                                >  1:71705/1‑193 (MQ=255)                                                                                                                                                                                                        acTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaatttttatt  <  1:843693‑M1/251‑72 (MQ=255)                                                                                                                                                                                                             gTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTT‑AAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaattttta    <  1:636407‑M1/243‑70 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                              TTCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTAAAGCTCTTTTCCCGAATTGTTTCGATGTAAGCGGTCAATTTTTATTAGAAAAATT  >  1/1009075‑1009534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.