| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 1009324 = | 4 (0.050) | 22 (0.300) | 15/376 | 3.2 | 92.6% | intergenic (+172/‑89) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| ? | 1 | = 1009313 | 0 (0.000) | intergenic (+161/‑100) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AACAATTCGGGAAAAGAGCTTTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 1/1009500‑1009324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcaaggcaaggcaaggcaaggcaagCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAATTTCAATTCGCGATTTCTCACTTGTTTTTTCAGAATGTCTAAAAATTCTTCCACGGTGAA < 1/1009313‑1009075 ggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATAC > 1:734897/22‑233 gagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAA > 1:137326/16‑251 gctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATGAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTATCAAGTACAAAGTGTACTTTGTTTTATACAATAT < 1:34500/217‑1 gctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAG > 1:275169/14‑234 gttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTAC < 1:145351/177‑1 GGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTAC < 1:71705/193‑1 GTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAA > 1:697985/1‑251 AGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTG < 1:330672/249‑1 GCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATG > 1:320664/1‑251 AAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTC < 1:99769/250‑1 TTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATAT < 1:42710/151‑1 CTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGC < 1:515156/251‑1 CTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGC < 1:651693/251‑1 TTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAA < 1:762537/251‑1 GTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACT < 1:230110/224‑1 GTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTC > 1:509339/1‑186 AGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAAC < 1:869215/218‑1 TAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAATTTCAATTCGCGATTTCTCACTTGTTTTTTCAGAATGT > 1:109985/1‑250 AGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGC > 1:563741/1‑199 AGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCC > 1:885899/1‑47 GTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTTGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGC < 1:446700/198‑1 GTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTA < 1:82494/162‑1 AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTC < 1:125110/152‑1 AGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATAC > 1:79286/1‑78 AGGCAAGGCAAGCATATTTTTTACTCCTATTAATGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAATTTCAATTCGCGATTTCTCACTTGTTTTTTCAGAATGTCTAAAAATTCTTCCACGGTGAA > 1:483973/1‑251 GGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATT < 1:416748/165‑1 AACAATTCGGGAAAAGAGCTTTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 1/1009500‑1009324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcaaggcaaggcaaggcaaggcaagCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAATTTCAATTCGCGATTTCTCACTTGTTTTTTCAGAATGTCTAAAAATTCTTCCACGGTGAA < 1/1009313‑1009075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |