Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	1	1,031,466	Δ11 bp	intergenic (‑263/‑138)	unknown ← / → unknown	hypothetical protein/Repressor protein CI

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	1	1031466	1031476	11	32 [0]	[0] 32	unknown/unknown	hypothetical protein/Repressor protein CI

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1031465	0 (0.000)	32 (0.380)	23/430	2.4	100%	intergenic (‑262/‑149)	unknown/unknown	hypothetical protein/Repressor protein CI
	?	1	1031477 =	0 (0.000)					intergenic (‑274/‑137)	unknown/unknown	hypothetical protein/Repressor protein CI

GATCCATTCTCCCTTCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACTAAGTTTAAAACCAAAGTCAACAATAGTTTAAATAAAAATTTTGTAAAACTTATGTAAAGAAATTTATTTTTGTTTAAATCAATACGTTAAGAGGTATTGTAAATTAAACTTAGTTTTAATCCTTGGTTTAAAACTAGGAGGTTAGATATGATCCGAGAGTGGCTAGAACTGAAAGACCTTTTGGGAGTAGCTGGACTACCAGAAACTGTTCAAGGGGTAACTAAAAAAGCCAAATTAGAAAACTGGG  >  1/1031221‑1031713                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         gATCCATTCTCCCTTCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaag                                                                                                                                                                                                                                                    >  1:812091‑M1/1‑245 (MQ=255)           cccTTCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatag                                                                                                                                                                                                                                          <  1:107266‑M1/251‑17 (MQ=255)           cccTTCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaat                                                                                                                                                                                                                                            >  1:601089‑M1/1‑235 (MQ=255)              ttCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagttt                                                                                                                                                                                                                                       <  1:87221‑M1/251‑20 (MQ=255)              ttCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagttt                                                                                                                                                                                                                                       <  1:696710‑M1/251‑20 (MQ=255)                                       tttttAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACc                                                                                                                                                                                                                                                         >  1:224090‑M1/1‑207 (MQ=255)                                             aTGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaaga                                                                                                                                                                                                        <  1:748594‑M1/251‑51 (MQ=255)                                             aTGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaaga                                                                                                                                                                                                        <  1:654766‑M1/251‑51 (MQ=255)                                                      gagCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagttt                                                                                                                                                                                                                                       >  1:441461‑M1/1‑192 (MQ=255)                                                                        cTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagttt                                                                                                                                                                                                                                       >  1:815028‑M1/1‑174 (MQ=255)                                                                                       atgtaatgtTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtc                                                                                                                                                                                                                                                  <  1:366964‑M1/167‑9 (MQ=255)                                                                                         gtaatgtTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaat                                                                                                                                                            >  1:741275‑M1/1‑157 (MQ=255)                                                                                         gtaatgtTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaat                                                                                                                                                                                                                                            >  1:590361‑M1/1‑157 (MQ=255)                                                                                                      cATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacg                                                                                                                                                                              <  1:17737‑M1/220‑77 (MQ=255)                                                                                                      cATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaat                                                                                                                                                                                                                                            <  1:794361‑M1/158‑15 (MQ=255)                                                                                                             cTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagt                                                                                                                                                                                                                                                   >  1:859599‑M1/1‑137 (MQ=255)                                                                                                             cTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACc                                                                                                                                                                                                                                                         <  1:316863‑M1/138‑2 (MQ=255)                                                                                                             cTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACc                                                                                                                                                                                                                                                         >  1:601234‑M1/1‑137 (MQ=255)                                                                                                                       aTCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaac                                                                                                                              <  1:142910‑M1/251‑125 (MQ=255)                                                                                                                                                   tCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagag                                                                                                     <  1:258807‑M1/248‑150 (MQ=255)                                                                                                                                                                        tttGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagagtggctagaactgaaagaccttttg                                                                             >  1:364573‑M1/1‑78 (MQ=255)                                                                                                                                                                                           aGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaat                                                                                                                                                                                                     >  1:335256‑M1/1‑59 (MQ=255)                                                                                                                                                                                            ggTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatag                                                                                                                                                                                                                                          <  1:265028‑M1/74‑17 (MQ=255)                                                                                                                                                                                            ggTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatag                                                                                                                                                                                                                                          <  1:406427‑M1/74‑17 (MQ=255)                                                                                                                                                                                                                     gTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagagtggctagaactgaaagaccttttgggagtagctggactaccagaaactgttcaaggggtaactaaaaaa                                >  1:299749‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                     gTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttt                                                                                                                                                >  1:900553‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                     gTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaa                                                                                                                                                             >  1:174772‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                     gTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaat                                                                                                                                                                                                                                   <  1:546691‑M1/56‑24 (MQ=255)                                                                                                                                                                                                                     gTCTTACCCCTTAGCGTTAAACTTAGTTTAAACctaaag                                                                                                                                                                                                                                                    >  1:258146‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                           ccccTTAGCGTTAAACTTAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagagtggctagaactgaaagaccttttgggagtagctggactaccagaaactgttcaaggggtaactaaaaaagccaaa                          >  1:101781‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                            tAGTTTAAACctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagagtggctagaactgaaagaccttttgggagtagctggactaccagaaactgttcaaggggtaactaaaaaagccaaattagaaaactgggaaag         <  1:117822‑M1/251‑242 (MQ=255)                                                                                                                                                                                                                                                   aaCctaaagtcaacaatagtttaaataaaaattttgtaaaacttatgtaaagaaatttatttttatttaaatcaatacgttaataggtattgtaaattaaacttagttttaatccttggtttaaaactaggaggttagatatgatccgagagtggctagaactgaaagaccttttgggagtagctggactaccagaaactgttcaaggggtaactaaaaaagccaaattagaaaactgggaaagacgactt  >  1:486843‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         GATCCATTCTCCCTTCGGATAACTAACTCGCAATGCATTTTTTAATGTGGAGGGAGCCAATCCAGACTTAACTGAAAGCGAATGCAATGTAATGTTTCGCTCATGTAACTCGTAAACAATCCGCTTTCTACTCCAATCCTTTTTTTTCATAGTTCCTCGCTTTTGCATTTGAATAATTTAAAGATTAGGTTAAACTTGGGTGTAAATCTTTAGTCTTACCCCTTAGCGTTAAACTTAGTTTAAACTAAGTTTAAAACCAAAGTCAACAATAGTTTAAATAAAAATTTTGTAAAACTTATGTAAAGAAATTTATTTTTGTTTAAATCAATACGTTAAGAGGTATTGTAAATTAAACTTAGTTTTAATCCTTGGTTTAAAACTAGGAGGTTAGATATGATCCGAGAGTGGCTAGAACTGAAAGACCTTTTGGGAGTAGCTGGACTACCAGAAACTGTTCAAGGGGTAACTAAAAAAGCCAAATTAGAAAACTGGG  >  1/1031221‑1031713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.