Predicted mutation
evidence seq id position mutation annotation gene description
JC 1 1,982,864 Δ3 bp intergenic (‑219/+117) unknown ← / ← unknown RTX toxin activating lysine‑acyltransferase (EC 2.3.1.‑)/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 = 19828630 (0.000)21 (0.240) 19/428 2.9 100% intergenic (‑218/+120) unknown/unknown RTX toxin activating lysine‑acyltransferase (EC 2.3.1.‑)/hypothetical protein
?1 1982867 = 0 (0.000)intergenic (‑222/+116) unknown/unknown RTX toxin activating lysine‑acyltransferase (EC 2.3.1.‑)/hypothetical protein

ACAATATACAAAATAACTTACACGATCGCATTACAGAAAATGCCAAACTCATTACGAAATCAAATAGACTATGATTTAATTATTATTGTTAAACAATAAATAGAAATATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTATTTAATTTAAATGAGTGATTCGTAGTTGGGTAAAAATAAAGTCGGCTTCAGATTATTTCTTATATATTTTTAAATTTACAATGAAAACCGGGATTTGATCTTCATAGCTATATAGCAGCTAGCCCCATGGCAACGGTAGAAGGGTAATTTTAAATTCAGTTAATCGTCTGCGTAATAAGCAAGAGAGGTAGAGGGGGAAGTATTTACTTTTTTTAGGTTTAGGGCGATGTCTACAATATTGTGTA  >  1/1982693‑1983109
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acaATATACAAAATAACTTACACGATCGCATGACAGAAAATGCCAAACTCATTACGAAATCAAATAGACTATGATTTAATTATTATTGTTAAACAATAAATAGAAATATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaat                                                                                                                                                                        >  1:511705‑M1/1‑171 (MQ=255)
   atatACAAAATAACTTACACGATCGCATGACAGAAAATGCCAAACTCATTACGAAATCAAATAGACTATGATTTAATTATTATTGTTAAACAATAAATAGAAATATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaa                                                                                                                                                                     >  1:654857‑M1/1‑168 (MQ=255)
                                                            cAAATAGACTATGATTTAATTATTATTGTTAAACAATAAATAGAAATATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaag                                                                                                            >  1:598612‑M1/1‑111 (MQ=255)
                                                                                                       aaaTATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagc                                                                                                                                              <  1:753047‑M1/174‑107 (MQ=255)
                                                                                                                 tATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagaggg                                                       >  1:264296‑M1/1‑58 (MQ=255)
                                                                                                                 tATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagc                                                                                                                                      <  1:491005‑M1/172‑115 (MQ=255)
                                                                                                                  aTTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagag                                                         <  1:122716‑M1/248‑192 (MQ=255)
                                                                                                                       aCCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcag                                                                                                                                    >  1:891182‑M1/1‑52 (MQ=255)
                                                                                                                            atatTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagagggggaagtattta                                            >  1:792309‑M1/1‑47 (MQ=255)
                                                                                                                            atatTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaa                                                                                                                                                                                >  1:521867‑M1/1‑47 (MQ=255)
                                                                                                                                  cAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtag                                                           <  1:473296‑M1/230‑190 (MQ=255)
                                                                                                                                  cAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagc                                                                                                                                      >  1:172852‑M1/1‑41 (MQ=255)
                                                                                                                                    ggAATATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagagggggaagtatttacttttttt                                    >  1:175716‑M1/1‑39 (MQ=255)
                                                                                                                                      aaTATATTCAAGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggttttgatcttcatagctatatagcagctagccccatggcaacggtagatgggtaattttaaatttagttaatcgtctgcgtaataagcaagagaggtag                                                           >  1:674777‑M1/1‑37 (MQ=255)
                                                                                                                                      aaTATATTCAAGCTTTATTATTTCGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcag                                                                                                                                    <  1:759985‑M1/153‑117 (MQ=255)
                                                                                                                                               aaGCTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagagggggaagtatttactttttttagatttagggc                         <  1:18919‑M1/251‑224 (MQ=255)
                                                                                                                                                  cTTTATTATTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcag                                                                                                                                    <  1:16271‑M1/141‑117 (MQ=255)
                                                                                                                                                    ttattaTTTTGCATAATAAACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagca                                                                     <  1:180483‑M1/202‑180 (MQ=255)
                                                                                                                                                                 taataaACCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagagggggaagtatatactttttttagatttagggcgatgtctacaatattgtg       >  1:828723‑M1/1‑10 (MQ=255)
                                                                                                                                                                      aaCCTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaagggtaattttaaattcagttaatcgtctgcgtaataagcaagagaggtagagggggaagtatttactttttttagatttagggcgatgtctacaatattgtgtaatc  <  1:865012‑M1/251‑247 (MQ=255)
                                                                                                                                                                        ccTtaatttaaatgagtgattcgtagttgggtaaaaataaagtcggcttcagattatttcttatatatttttaaatttacaatgaaaaccgggatttgatcttcatagctatatagcagctagccccatggcaacggtagaaggg                                                                                                          <  1:533682‑M1/145‑143 (MQ=255)
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ACAATATACAAAATAACTTACACGATCGCATTACAGAAAATGCCAAACTCATTACGAAATCAAATAGACTATGATTTAATTATTATTGTTAAACAATAAATAGAAATATAACTTATTTAACCTTATATTACAGGAATATATTCAAGCTTTATTATTTTGCATAATAAACCTATTTAATTTAAATGAGTGATTCGTAGTTGGGTAAAAATAAAGTCGGCTTCAGATTATTTCTTATATATTTTTAAATTTACAATGAAAACCGGGATTTGATCTTCATAGCTATATAGCAGCTAGCCCCATGGCAACGGTAGAAGGGTAATTTTAAATTCAGTTAATCGTCTGCGTAATAAGCAAGAGAGGTAGAGGGGGAAGTATTTACTTTTTTTAGGTTTAGGGCGATGTCTACAATATTGTGTA  >  1/1982693‑1983109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.