New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	718084 =	207 (0.900)	3 (0.010)	3/276	16.4	1.6%	intergenic (+52/‑225)	C7Y58_03540/C7Y58_03545	hypothetical protein/short‑chain fatty acids transporter
	?	CP028101	718110 =	176 (0.820)					intergenic (+78/‑199)	C7Y58_03540/C7Y58_03545	hypothetical protein/short‑chain fatty acids transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTTACTTTTTTAGTACAATATTTTAGTAAATGAAATATATGTTTTAAAACATAACTTATACAATTTATTTATAAAATATATATTTAAAAATTTAAAACTTTTATAGCTTTTATAGAAATAAAAAACCGTGAGACTACTCACGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/718232‑718084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacggttttTTATTTCTATAAAAGCTATAAAAGTTTTAAATTTTTAAATATATATTTTATAAATAAATTGTATAAGTTATGTTTTAAAACATATATTTCATTTACTAAAATAT  >  CP028101/718110‑718213                                                                                                                                                                                                                                                               TCCTTACTTTTTTAGTACAATATTTTAGTAAATGAAATATATGTTTTAAAACATAACTTATACAATTTATTTATAAAATATATATTTAAAAATTTAAAACTTTTATAGCTTTTATAGAAATAAAAAAACGTGAGACTAATCACGGTTTTT                                                                                                         >  1:1707828/1‑150                                                                      TTTATAAAATATATATTTAAAAATTTAAAACTTTTATAGCTTTTATAGAAATAAAAAACCGTGAGACTAATCACGGTTTTTTATTTCTATAAAAGCTATAAAAGTTTTAAATTTTTAAATATATATTTTATAAATAAATTGTATAAGTTA                                    >  1:1582819/1‑150                                                                                                        TATAGCTTTTATAGAAATAAAAAAACGTGAGACTACTCACGGTTTTTTATTTCTATAAAAGCTATAAAAGTTTTAAATTTTTAAATATATATTTTATAAATAAATTGTATAAGTTATGTTTTAAAACATATATTTCATTTACTAAAATAT  >  1:2473226/1‑150                                                                                                                                                                                                                                                               TCCTTACTTTTTTAGTACAATATTTTAGTAAATGAAATATATGTTTTAAAACATAACTTATACAATTTATTTATAAAATATATATTTAAAAATTTAAAACTTTTATAGCTTTTATAGAAATAAAAAACCGTGAGACTACTCACGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/718232‑718084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacggttttTTATTTCTATAAAAGCTATAAAAGTTTTAAATTTTTAAATATATATTTTATAAATAAATTGTATAAGTTATGTTTTAAAACATATATTTCATTTACTAAAATAT  >  CP028101/718110‑718213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.