New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	1969119 =	381 (0.800)	5 (0.010)	5/226	22.4	1.7%	intergenic (+16/‑118)	C7Y58_09535/C7Y58_09540	cupin domain‑containing protein/methyltransferase
	?	CP028101	1969155 =	298 (0.830)					intergenic (+52/‑82)	C7Y58_09535/C7Y58_09540	cupin domain‑containing protein/methyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTTTCCATATTTCCTCCCCAAAATTTAAAAATTTATTGAAAATAAAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1969246‑1969119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagattaagaaataaaattttatttcttaatctttTTTTAATTTTTCTATGATATAATAAATTGAATAAAATAATTTCTTTTATTTTCAATAAATTTTTAAATTTTGGGGAGGAAATATGGAAAATT  >  CP028101/1969155‑1969246                                                                                                                                                                                                                              AATTTTCCATATTTCCTCCCCAAAATTTAAAAATTTATTGAAAATAAAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAACAAAATTTTACTTCTTAATCTTTTTTTAATTTTTCTATGATATAA                                                                        >  2:2210548/1‑150            TTTCCTCCCCAAAATTTAAACATTTATTGAAAATAAAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTTTTTTAATTTTTCTATGATATAATAAATTGAATA                                                             <  2:2490991/150‑1                         ATTTAAAAATTTATTGAAAATAAAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTTTTTTAATTTTTCTATGATATAATAAATTGAATAAAATAATTTCTTT                                                <  1:696141/150‑1                                               AAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTTTTTTAATTTTTCTATGATATAATAAATTGAATAAAATAATTTCTTTTATTTTCAATAAATTTTTAAAT                          >  1:2076338/1‑150                                                                       TTATATCGTAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTTTTTTAATTTTTCTATGATACAATAAATTGAATAAAATAATTTCTTTTATTTTCAATAAATTTTTAAATTTTGGGGAGGAAATATGGAAAATT  <  2:2210551/150‑1                                                                                                                                                                                                                              AATTTTCCATATTTCCTCCCCAAAATTTAAAAATTTATTGAAAATAAAAGAAATTATTTTATTCAATTTATTATATCATAGAAAAATTAAAAAAAGATTAAGAAATAAAATTTTATTTCTTAATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1969246‑1969119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagattaagaaataaaattttatttcttaatctttTTTTAATTTTTCTATGATATAATAAATTGAATAAAATAATTTCTTTTATTTTCAATAAATTTTTAAATTTTGGGGAGGAAATATGGAAAATT  >  CP028101/1969155‑1969246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.