| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC | NC_007792 | 1,916 | Δ22,120 bp | between repeat_region | SAUSA300_RS14750–SAUSA300_RS14855 | 22 genes SAUSA300_RS14750, SAUSA300_RS14755, SAUSA300_RS14760, SAUSA300_RS14765, SAUSA300_RS14770, SAUSA300_RS14775, SAUSA300_RS14780, SAUSA300_RS14785, SAUSA300_RS14790, SAUSA300_RS14795, SAUSA300_RS14800, SAUSA300_RS14805, SAUSA300_RS14810, SAUSA300_RS14815, SAUSA300_RS14820, SAUSA300_RS14825, SAUSA300_RS14830, SAUSA300_RS14835, SAUSA300_RS14840, SAUSA300_RS14845, SAUSA300_RS14850, SAUSA300_RS14855 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007792 | 1913 | 23248 | 21336 | 81 [2] | [14] 17 | SAUSA300_RS14750–[SAUSA300_RS14850] | 21 genes SAUSA300_RS14750, SAUSA300_RS14755, SAUSA300_RS14760, SAUSA300_RS14765, SAUSA300_RS14770, SAUSA300_RS14775, SAUSA300_RS14780, SAUSA300_RS14785, SAUSA300_RS14790, SAUSA300_RS14795, SAUSA300_RS14800, SAUSA300_RS14805, SAUSA300_RS14810, SAUSA300_RS14815, SAUSA300_RS14820, SAUSA300_RS14825, SAUSA300_RS14830, SAUSA300_RS14835, SAUSA300_RS14840, SAUSA300_RS14845, [SAUSA300_RS14850] |
GAAATAATTTGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGC > NC_007792/23233‑23348 | acagttaggaggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAgg < 1:3298148/90‑1 (MQ=255) ctcttccgatCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGt < 1:484376/91‑1 (MQ=255) ctcttccgatCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGCCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATgg < 1:3649855/91‑2 (MQ=11) tcttccgatCTGTTGCTAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGtt < 1:1435470/92‑1 (MQ=11) taggaggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGtt < 1:1231234/95‑1 (MQ=14) taggaggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGtt < 1:1935762/95‑1 (MQ=14) aggaggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTa > 1:346203/5‑100 (MQ=14) gaggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGTGCCTTCTGTATGAACTATTTCAGATATAACCAATTTAACAAGGATGTTATc > 1:3072609/3‑100 (MQ=11) acggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATc > 1:5185867/3‑100 (MQ=11) aggTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCa > 1:2450578/2‑100 (MQ=14) gatCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACt < 1:1800122/98‑1 (MQ=17) tCTGTTGCTAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGt < 1:920209/100‑1 (MQ=17) tCTGTTGCGAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGt < 1:1249494/100‑1 (MQ=17) cTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTa > 1:2415505/1‑100 (MQ=32) gTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGc > 1:3736218/1‑100 (MQ=32) gTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGc > 1:4616589/1‑100 (MQ=32) gTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGc > 1:3533306/1‑100 (MQ=32) | GAAATAATTTGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGC > NC_007792/23233‑23348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |