| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC | NC_007792 | 1,916 | Δ22,120 bp | between repeat_region | SAUSA300_RS14750–SAUSA300_RS14855 | 22 genes SAUSA300_RS14750, SAUSA300_RS14755, SAUSA300_RS14760, SAUSA300_RS14765, SAUSA300_RS14770, SAUSA300_RS14775, SAUSA300_RS14780, SAUSA300_RS14785, SAUSA300_RS14790, SAUSA300_RS14795, SAUSA300_RS14800, SAUSA300_RS14805, SAUSA300_RS14810, SAUSA300_RS14815, SAUSA300_RS14820, SAUSA300_RS14825, SAUSA300_RS14830, SAUSA300_RS14835, SAUSA300_RS14840, SAUSA300_RS14845, SAUSA300_RS14850, SAUSA300_RS14855 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007792 | 1913 | 23248 | 21336 | 81 [2] | [14] 17 | SAUSA300_RS14750–[SAUSA300_RS14850] | 21 genes SAUSA300_RS14750, SAUSA300_RS14755, SAUSA300_RS14760, SAUSA300_RS14765, SAUSA300_RS14770, SAUSA300_RS14775, SAUSA300_RS14780, SAUSA300_RS14785, SAUSA300_RS14790, SAUSA300_RS14795, SAUSA300_RS14800, SAUSA300_RS14805, SAUSA300_RS14810, SAUSA300_RS14815, SAUSA300_RS14820, SAUSA300_RS14825, SAUSA300_RS14830, SAUSA300_RS14835, SAUSA300_RS14840, SAUSA300_RS14845, [SAUSA300_RS14850] |
TTTCCCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCAAATTTATAAT > NC_007792/1813‑1922 | tttCGCCGTGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:1610037/100‑1 (MQ=255)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:24592/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:921177/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:2290600/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa > 1:2225363/1‑100 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:2220518/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:759709/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:394593/100‑1 (MQ=25)tttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCa < 1:3012272/100‑1 (MQ=25) ttCGCCATGCCTCGAAATTAGCATCATGCTCGCAAGTTAAACGAACATTGACGTGATATATTAGTGATTAGTTATATTTTTTGCTTTGCAACAGAACCat < 1:2698403/100‑2 (MQ=11) ttCGCCATGCCACGAAATTAGCATCATGCTAGGAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCag < 1:4995402/100‑2 (MQ=255) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:2143132/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:613767/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:4564388/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:2688739/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:2271216/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:1256807/100‑2 (MQ=25) ttCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:4766495/100‑2 (MQ=25) ttCCCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCag < 1:2544736/100‑2 (MQ=255) tgccccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat > 1:4140403/3‑99 (MQ=255) tctcccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCag < 1:2922137/97‑2 (MQ=255) tccgatctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCat < 1:5080364/93‑2 (MQ=255) tccgatctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCag < 1:1967730/93‑2 (MQ=255) tcgccATGCCACGAAATTGGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatt < 1:867674/97‑3 (MQ=255) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:355462/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:3423743/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:5151181/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:4503540/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:3346996/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:3319863/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:591833/97‑3 (MQ=18) tcgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:2911082/97‑3 (MQ=18) tCCCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagg < 1:2802/100‑3 (MQ=255) tCCCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagc < 1:2077487/100‑3 (MQ=255) cgatcttGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:1224586/94‑3 (MQ=255) ccgatctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:4906601/94‑3 (MQ=255) ccgatctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatc < 1:2712002/94‑3 (MQ=255) tcccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCAGAt < 1:1751391/99‑1 (MQ=255) gatcttGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagcc < 1:3158621/95‑4 (MQ=255) cgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCTACAGAACCatca < 1:1962114/98‑4 (MQ=255) cgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatca < 1:841204/98‑4 (MQ=25) cgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatca < 1:4968561/98‑4 (MQ=25) cgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatca < 1:1020000/98‑4 (MQ=25) cgccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCAGAt < 1:424885/98‑1 (MQ=255) ccccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagcc < 1:3135787/100‑4 (MQ=255) ccccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagcc < 1:373892/100‑4 (MQ=255) ccccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagca < 1:2766399/100‑4 (MQ=255) ccccATGCCACGAAATTAGCATCATGCTAGAAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagcc > 1:4993488/1‑97 (MQ=255) gccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGATCCatcat < 1:2249454/99‑5 (MQ=255) gccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcat < 1:3729597/99‑5 (MQ=255) gccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcag < 1:3134593/99‑5 (MQ=255) gccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcag < 1:2861962/99‑5 (MQ=255) cccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagcca > 1:759416/1‑96 (MQ=255) tcttGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat < 1:271422/97‑6 (MQ=255) tcATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccaa < 1:163870/99‑6 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGACCCagccat < 1:1605920/100‑6 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat > 1:227856/1‑95 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat > 1:1842149/1‑95 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat < 1:3903317/100‑6 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat > 1:3387285/1‑95 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat > 1:2300771/1‑95 (MQ=255) ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGACTAGCTATATTTTTTACTTTGCAACAGAACCagccaa < 1:2902561/100‑6 (MQ=255) atctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat < 1:3999768/97‑6 (MQ=255) atctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccat < 1:2562830/97‑6 (MQ=255) cATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatgcagg < 1:4351363/100‑7 (MQ=255) cATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatt > 1:4165690/1‑94 (MQ=255) cATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATACTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatg < 1:4715857/100‑7 (MQ=255) aaTGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatt > 1:1337760/2‑94 (MQ=255) tgcccACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATACTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcatttt < 1:4162521/97‑8 (MQ=11) ctGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccattt > 1:5020312/2‑93 (MQ=255) aTGCTACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatag < 1:258618/100‑8 (MQ=255) aTGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcatttt > 1:1068872/1‑93 (MQ=255) aTGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcatttt > 1:4173720/1‑93 (MQ=255) aTGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccattt < 1:483337/100‑8 (MQ=255) tGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccattta > 1:458554/1‑92 (MQ=255) tGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccattta < 1:3948208/100‑9 (MQ=255) gCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatttaa > 1:3977509/1‑91 (MQ=255) gCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCagccatttaa > 1:969241/1‑91 (MQ=255) ccACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcattttttt < 1:2697852/100‑11 (MQ=255) ccACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCatcatttttat > 1:4159469/1‑90 (MQ=255) ccACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTCACATGCTATATTAGTGATTAGCTCTATTTTTTACTTTGCAACAGAACCagccatttaat > 1:2464571/1‑90 (MQ=14) | TTTCCCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAACGAACACTGACATGATATATTAGTGATTAGCTATATTTTTTACTTTGCAACAGAACCAAATTTATAAT > NC_007792/1813‑1922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |