Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	NC_007793	512,783	Δ5,436 bp	between repeat_region	SAUSA300_RS02440–SAUSA300_RS02450	SAUSA300_RS02440, SAUSA300_RS02445, SAUSA300_RS02450

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	515151–517718	518264	547–3114	2 [0]	[0] 1	[SAUSA300_RS02445]–SAUSA300_RS02450	[SAUSA300_RS02445], SAUSA300_RS02450

AATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAGG  >  NC_007793/518265‑518364 |                                                                                                    aaTGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAgg  >  1:494840/1‑100 (MQ=32) |                                                                                                    AATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAGG  >  NC_007793/518265‑518364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑