Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	2139406	2139408	3	1 [0]	[0] 2	SAUSA300_RS10895	integrase

GTAATAAAGGTGTTGCGTGATTATAAGATAAACGTTCAAAATAATTGGAAAAACGAATTATATAATGATAACCATTGTAATGAAAAAACTATCAATGTGG  >  NC_007793/2139409‑2139508 |                                                                                                    gTAATAAAGGTGTTGCGTGATTATAAGATAAACGTTCAAAATAATTGGAAAAACGAATTATATAATGATAACCATTGTAATGAAAAAACTATCAATGTgg  <  1:12193/100‑1 (MQ=255) gTAATAAAGGTGTTGCGTGATTATAAGATAAACGTTCAAAATAATTGGAAAAACGAATTATATAATGATAACCATTGTAATGAAAAAACTATCAATGTgg  <  1:2773465/100‑1 (MQ=255) |                                                                                                    GTAATAAAGGTGTTGCGTGATTATAAGATAAACGTTCAAAATAATTGGAAAAACGAATTATATAATGATAACCATTGTAATGAAAAAACTATCAATGTGG  >  NC_007793/2139409‑2139508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑