Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	2139406	2139408	3	1 [0]	[0] 2	SAUSA300_RS10895	integrase

TATTACTAAAACATATTACAATCCAAATAATAACAAGAAGAAATATCAGATACTTCCCCCTAAAACTGAAAGTTCTATCGGTAAGATTTCCGTTGACCCA  >  NC_007793/2139306‑2139405                                                                                                    | tATTACTAAAACATATTACAATCCAAATAATAACAAGAAGAAATATCAGATACTTCCCCCTAAAACTGAAAGTTCTATCGGTAAGATTTCCGTTGACCCa  <  1:5509834/100‑1 (MQ=255)                                                                                                    | TATTACTAAAACATATTACAATCCAAATAATAACAAGAAGAAATATCAGATACTTCCCCCTAAAACTGAAAGTTCTATCGGTAAGATTTCCGTTGACCCA  >  NC_007793/2139306‑2139405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑