| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 1818536 | 57 (0.840) | 8 (0.120) | 6/442 | 4.6 | 11.6% | coding (411/1734 nt) | unknown | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydC subunit |
| ? | 1 | = 1818720 | 66 (1.000) | coding (595/1734 nt) | unknown | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydC subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTATTTAACTTTTTCTACCCATCCGCCAGCGTACGCGGTTTGGCAATCGGGCGTACCGTGGCGCGCTACCTTGAAAAAGTGGTCACCCATGACGCCACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/1818285‑1818536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcgTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAACAGCGCGAGCGGGGCATTAATAAAACTCAAGCCAAAGGTAATGAACGCAATCACCACTATGGCGCTGATAAAGGGCGCAATGAGGCGAAGATATAGGCTGTCGAGGGTGTCCACATCGGCAACCAAGCGGTTTAATAA < 1/1818720‑1818474 CTATTTAACTTTTTCTACCCATCCGCCAGCGTACGCGGTTTGGCAATCGGGCGTACCGTGGCGCGCTACCTTGAAAAAGTGGTCACCCATGACGCCACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTG > 1:390065/1‑250CTATTTAACTTTTTCTACCCATCCGCCAGCGTACGCGGTTTGGCAATCGGGCGTACCGTGGCGCGCTACCTTGAAAAAGTGGTCACCCATGACGCCACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTG > 1:600801/1‑250 GCGTACCGTGGCGCGCTACCTTGAAAAAGTGGTCACCCATGACGCCACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTAC > 1:555645/1‑250 ACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAAT > 1:13837/1‑251 CCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATG > 1:120418/1‑251 CAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAAC < 1:566365/250‑1 GCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAAC > 1:395100/1‑243 CGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAAC < 1:250349/177‑1 CGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAAC > 1:512968/1‑177 CGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAAC < 1:59520/177‑1 ATTGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAACAGCGCGAGCGGGGCATTAATAAAACTCAAGCCAAAGGTAATGAACGCAATCACCACTATGGCGCTGATAAAGGGCGCAATGAGGCGAAGATATAGGCTGTCGAGGGTGTCCACATCGGCAACCAAGCGGTTTAAT > 1:23814/1‑251 TGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAACAGCGCGAGCGGGGCATTAATAAAACTCAAGCCAAAGGTAATGAACGCAATCACCACTATGGCGCTGATAAAGGGCGCAATGAGGCGAAGATATAGGCTGTCGAGGGTGTCCACATCGGCAACCAAGCGGTTTAATAA < 1:488385/251‑1 TGCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAACAGCGCGAGCGGGGCATTAATAAAACTCAAGCCAAAGGTAATGAACGCAATCACCACTATGGCGCTGATAAAGGGCGCAATGAGGCGAAGATATAGGCTGTCGAGGGTGTCCACATCGGCAACCAAGCGGTTTAATAA < 1:58854/251‑1 GCGTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTG > 1:407043/1‑101 CTATTTAACTTTTTCTACCCATCCGCCAGCGTACGCGGTTTGGCAATCGGGCGTACCGTGGCGCGCTACCTTGAAAAAGTGGTCACCCATGACGCCACCTTCCGCGTATTGGCAAAACTGCGTGTGCAGGTGTTTGACAAAATCATTCCGTTAAGCCCTGCGCTGCTCAACCGTTATCGTAACAGCGATTTATTAAACCGCTTGGTTGCCGATGTGGACACCCTCGACAGCCTATATCTTCGCCTCATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/1818285‑1818536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcgTGCGGTAAAGGGCGCGGGATTGGGTAAGTTTGGCGCCGAATTTGTTACCCAAATGGTAAAAAATCGTCGGGATAACCAGCAAGAGCGCCAGTAATGTGAAACCGATAAACAGCGCGAGCGGGGCATTAATAAAACTCAAGCCAAAGGTAATGAACGCAATCACCACTATGGCGCTGATAAAGGGCGCAATGAGGCGAAGATATAGGCTGTCGAGGGTGTCCACATCGGCAACCAAGCGGTTTAATAA < 1/1818720‑1818474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |