mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 183 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,481,413 | 0 | A | T | 76.5% | 107.5 / 32.7 | 51 | intergenic (+148795/+105720) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,481,405 | 0 | T | C | 72.2% | 86.7 / 32.9 | 54 | intergenic (+148787/+105728) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,481,407 | 0 | G | T | 72.2% | 88.9 / 44.4 | 54 | intergenic (+148789/+105726) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,481,401 | 0 | A | T | 67.8% | 86.9 / 59.7 | 59 | intergenic (+148783/+105732) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,645,390 | 0 | C | G | 61.8% | 160.3 / 193.0 | 144 | intergenic (‑33920/‑39229) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,476,336 | 0 | A | C | 57.4% | 28.6 / 67.2 | 54 | intergenic (+143718/+110797) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,645,359 | 0 | C | T | 54.6% | 40.3 / 174.2 | 142 | intergenic (‑33889/‑39260) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 960,219 | 1 | . | C | 52.0% | 81.7 / 93.1 | 50 | intergenic (+9970/+42840) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| * | 1 | 1,645,436 | 0 | C | A | 50.0% | 18.8 / 204.9 | 138 | intergenic (‑33966/‑39183) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,645,434 | 0 | T | C | 49.6% | 6.2 / 172.8 | 135 | intergenic (‑33964/‑39185) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,748,648 | 0 | A | C | 49.2% | 70.4 / 27.1 | 65 | intergenic (‑39238/‑10704) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,645,435 | 0 | C | A | 48.9% | 19.1 / 210.2 | 138 | intergenic (‑33965/‑39184) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,927,461 | 0 | C | G | 44.8% | 21.5 / 12.6 | 30 | intergenic (+93020/‑57564) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 960,211 | 1 | . | C | 44.0% | 6.3 / 102.9 | 50 | intergenic (+9962/+42848) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| * | 1 | 789,340 | 0 | G | A | 43.8% | 44.5 / 22.3 | 48 | intergenic (+54408/+32537) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 1,669,874 | 0 | A | C | 43.3% | 92.2 / 14.9 | 68 | intergenic (‑58404/‑14745) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,072,176 | 0 | A | C | 42.7% | 122.2 / 11.9 | 75 | intergenic (‑18952/‑10641) | unknown/unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,344,498 | 0 | T | G | 41.5% | 105.9 / 10.7 | 65 | intergenic (+11880/+242635) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,645,387 | 0 | A | G | 41.5% | 82.9 / 144.8 | 148 | intergenic (‑33917/‑39232) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,988,442 | 0 | T | A | 41.0% | 118.9 / 37.0 | 78 | intergenic (+3242/+53347) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 264889 | NA (NA) | 12 (0.150) | 9/396 | 4.7 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 264994 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 865747 | 89 (1.020) | 10 (0.120) | 9/406 | 4.8 | 10.9% | intergenic (‑14507/‑58012) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG |
| ? | 1 | = 865993 | 80 (0.970) | intergenic (‑14753/‑57766) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG | |||||
| * | ? | 1 | = 5609 | NA (NA) | 8 (0.090) | 7/420 | 5.5 | NA | intergenic (–/+128332) | –/unknown | –/tRNA‑Ala‑GGC |
| ? | 1 | = 5819 | NA (NA) | intergenic (–/+128122) | –/unknown | –/tRNA‑Ala‑GGC | |||||
| * | ? | 1 | = 928114 | 61 (0.700) | 3 (0.050) +72 bp |
3/286 | 5.8 | 12.9% | intergenic (+4270/‑22049) | unknown/unknown | tRNA‑Leu‑GAG/tRNA‑Leu‑CAG |
| ? | 1 | 960294 = | 0 (0.000) | intergenic (+10045/+42765) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT | |||||
| * | ? | 1 | 1248990 = | 101 (1.150) | 6 (0.070) | 5/412 | 6.2 | 5.7% | intergenic (‑138608/‑57575) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| ? | 1 | 1249377 = | 100 (1.190) | intergenic (‑138995/‑57188) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT | |||||
| * | ? | 1 | = 877207 | 115 (1.310) | 5 (0.060) | 5/418 | 6.2 | 4.4% | intergenic (‑25967/‑46552) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG |
| ? | 1 | = 877341 | 106 (1.240) | intergenic (‑26101/‑46418) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG | |||||
| * | ? | 1 | 732132 = | 79 (0.900) | 6 (0.070) | 5/410 | 6.2 | 6.1% | intergenic (+19055/‑2645) | unknown/unknown | tRNA‑Arg‑TCT/tRNA‑Phe‑GAA |
| ? | 1 | 732475 = | 111 (1.330) | intergenic (+19398/‑2302) | unknown/unknown | tRNA‑Arg‑TCT/tRNA‑Phe‑GAA | |||||
| * | ? | 1 | = 1246328 | 89 (1.020) | 5 (0.060) | 5/422 | 6.3 | 5.3% | intergenic (‑135946/‑60237) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| ? | 1 | = 1246580 | 92 (1.070) | intergenic (‑136198/‑59985) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT | |||||
| * | ? | 1 | = 1356835 | 76 (0.870) | 4 (0.050) | 4/386 | 6.4 | 5.3% | intergenic (+24217/+230298) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | = 1356885 | 74 (0.940) | intergenic (+24267/+230248) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC | |||||
| * | ? | 1 | 264873 = | NA (NA) | 6 (0.070) | 4/396 | 6.5 | NA | noncoding (1303/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 265012 = | NA (NA) | noncoding (1164/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||