Predicted mutation
evidence seq id position mutation annotation gene description
MC JC 1 1,325,601 332 bp→ACCAAATATGTTCATTAGAATG intergenic (+166021/+95005) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ 1 1325601 1325932 332 31 [0] [0] 35 unknown/unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 = 13256000 (0.000)28 (0.350)
+ACCAAATATGTTCATTAGAATG
24/386 1.9 100% intergenic (+166020/+95337) unknown/unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT
?1 1325933 = 0 (0.000)intergenic (+166353/+95004) unknown/unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

TGTATCTTGAATTTTGGTTGTCAACCTTACAACAGAAGTGGAAACTATTATATTTTGGCAACAAATATTGTTTATGGTTTAGTTTCTTTAATTTTATACCCTTATTCACGCTTTACTTATGAAGGTATTGTTGAATGCATTGTGGGAGATAATATATTCATCACAGATGCATTATTTATGATGACAGTAAAACTGATAACAATGGCTATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAGGATCTTAC  >  1/1325733‑1326175
                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  
gtaaaaccctaacaggacctagctcccacccccttatagtattcaataaattcaaaaatatccaaacgacgatctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACt                                                                                                                                                                                                                                    >  1:685670‑M2/201‑217 (MQ=255)
                             ccccttatagtattcaataaattcaaaaatatccaaacgacgatctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAg                                                                                                                                                                     >  1:336747‑M2/172‑251 (MQ=255)
                              cccttatagtattcaataaattcaaaaatatccaaacgacgatctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCAcc                                                                                                                                                                                                              <  1:497709‑M2/39‑1 (MQ=255)
                                                          tatccaaacgacgatctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGct                                                                                                                                                                                            <  1:89654‑M2/57‑1 (MQ=255)
                                                                  cgacgatctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAataata                                                                                                                                >  1:168905‑M2/135‑251 (MQ=255)
                                                                       atctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCAcc                                                                                                                                                                                                              <  1:360054‑M2/39‑1 (MQ=255)
                                                                        tctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAgg                                                                                                                          <  1:391486‑M2/123‑1 (MQ=255)
                                                                         ctatggtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCtctattt                                                                                                                                                                                      >  1:338890‑M2/128‑190 (MQ=255)
                                                                              gtctcgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCtctatttc                                                                                                                                                                                     <  1:178264‑M2/64‑1 (MQ=255)
                                                                                  cgactttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgaatg                                                                                                                                                                                                                                                 >  1:628570‑M2/119‑122 (MQ=255)
                                                                                    actttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACt                                                                                                                                                                                                     >  1:14385‑M2/117‑164 (MQ=255)
                                                                                      tttatcaataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAgcgc                                                                                                            <  1:119419‑M2/137‑1 (MQ=255)
                                                                                           caataaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGaa                                                                                                                                                                   >  1:229950‑M2/110‑191 (MQ=255)
                                                                                               aaaagaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTAtttt                                                                                                   <  1:630386‑M2/146‑1 (MQ=255)
                                                                                                  agaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAAtaataa                                                                                                                               <  1:692079‑M2/118‑1 (MQ=255)
                                                                                                  agaatacacaacacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTAttt                                                                                                    <  1:628832‑M2/145‑1 (MQ=255)
                                                                                                            acacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATcaac                                                                                                                                       <  1:311103‑M2/110‑1 (MQ=255)
                                                                                                             cacccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTAc                                                                                                                                                                                                                                     >  1:58329‑M2/92‑107 (MQ=255)
                                                                                                              acccaatttttcataaaatgcgcactgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAAc                                                                                                                                                                        <  1:612033‑M2/77‑1 (MQ=255)
                                                                                                                                      ctgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCtctatttctat                                                                                                                                                                                  >  1:721081‑M2/67‑133 (MQ=255)
                                                                                                                                      ctgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCtctatttcta                                                                                                                                                                                   >  1:325156‑M2/67‑132 (MQ=255)
                                                                                                                                      ctgtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAAc                                                                                                                                                                        >  1:380337‑M2/67‑143 (MQ=255)
                                                                                                                                        gtagacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCttttt                                                           >  1:6777‑M2/65‑250 (MQ=255)
                                                                                                                                           gacctaatttatttcgacgattaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAg                                                                                                               <  1:89356‑M2/134‑1 (MQ=255)
                                                                                                                                                              attaagtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTAttttt                                                                                                  >  1:23507‑M2/43‑189 (MQ=255)
                                                                                                                                                                   gtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGa                                                                                                                                               >  1:480069‑M2/38‑139 (MQ=255)
                                                                                                                                                                   gtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATaaaa                                                                                                                             <  1:558624‑M2/120‑1 (MQ=255)
                                                                                                                                                                   gtaataattctcttaaccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGt                                >  1:133228‑M2/38‑250 (MQ=255)
                                                                                                                                                                                   ccaaatatgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCa               >  1:691345‑M2/22‑251 (MQ=255)
                                                                                                                                                                                          tgttcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAGGa        <  1:391906‑M2/237‑1 (MQ=255)
                                                                                                                                                                                             tcattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAGGAt       >  1:422553‑M2/12‑249 (MQ=255)
                                                                                                                                                                                              cattagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAg          <  1:2803‑M2/235‑1 (MQ=255)
                                                                                                                                                                                                ttagaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAGGATCTTAc  <  1:586244‑M2/243‑1 (MQ=255)
                                                                                                                                                                                                  agaatgAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCtctatttctat                                                                                                                                                                                  >  1:679146‑M2/7‑73 (MQ=255)
                                                                                                                                                                                                       gAATGGATATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCg                              <  1:449602‑M2/215‑1 (MQ=255)
                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  
TGTATCTTGAATTTTGGTTGTCAACCTTACAACAGAAGTGGAAACTATTATATTTTGGCAACAAATATTGTTTATGGTTTAGTTTCTTTAATTTTATACCCTTATTCACGCTTTACTTATGAAGGTATTGTTGAATGCATTGTGGGAGATAATATATTCATCACAGATGCATTATTTATGATGACAGTAAAACTGATAACAATGGCTATCTGTTACTTTTTTGCTTTATTTATCTCACCAATCGGACTCATTTGGCTCTATTTCTATTATTCAAAACAAGAAAAAATAGCCAATCAATCAGAAAATCAACAATAATAAAAAGGACGCTCATGAGCGCCCTTATTTTTTATCTAAACTTTAAAATTAAAGTGCAGATTTTGCTTTTTCAACTAATGCAGCGAAAGCCACTTTGTCGAATACGGCGATATCAGCAAGGATCTTAC  >  1/1325733‑1326175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑