| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | 1 | 429,393 | Δ9,084 bp | intergenic (‑12571/‑58987) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | 1 | 429393 | 438476 | 9084 | 77 [0] | [0] 77 | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 429392 | 0 (0.000) | 77 (0.880) | 49/426 | 0.5 | 100% | intergenic (‑12570/‑68071) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| ? | 1 | 438477 = | 0 (0.000) | intergenic (‑21655/‑58986) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA | |||||
TAGGCACTTTAGATTTTAGTTATACGTTTAGTTATACGGAGTAAAAACCAAATTGCACAAATCTAGCAATAACAAGGCTTACAAGCAACAATTCAGATAACCCCAGCCCACCAAAACATAGTCCAAAGCAAACTTTACAAAACCTAAAAGCCCTTGAAAATATTAACCTCAAGGGCTTTTTTATTTCCTAAGCGTTCCTATAAGATACTACCAAAGCCTTGAATTTTAGTTATACGATTCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCCACCTCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTT > 1/438238‑438720 | agcaaaaggttttactcatgttttagctatacctgattttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttacccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTTA‑Gtt > 1:185195‑M2/240‑251 (MQ=255) gcaaaaggttttactcatgttttagctatacctgattttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaagggggctaagttatggcggtttCCCGTTTTA‑Gtttt > 1:615660‑M2/238‑251 (MQ=255) ttttactcatgttttagctatacctgattttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAgg < 1:41447‑M2/21‑1 (MQ=255) tgttttagctatacctgattttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggttttCCCGTTT‑A‑GTTTTTTaaa > 1:333238‑M2/222‑239 (MQ=255) ttttagctatacctgattttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGaa < 1:843830‑M2/32‑1 (MQ=255) tttttaaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGcc < 1:471297‑M2/50‑1 (MQ=255) taaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACtt < 1:344987‑M2/54‑1 (MQ=255) aaaagtctgaattgccgtcagagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTc < 1:117369‑M2/55‑1 (MQ=255) gagttattcagaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGcc < 1:462182‑M2/50‑1 (MQ=255) agaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCAc < 1:315874‑M2/52‑1 (MQ=255) gaataattttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttcccgtttttgctt > 1:256472‑M2/167‑173 (MQ=255) tttcaactctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTTA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTTTTTTAGCCCCTTCAATCTGCGTTC‑TTTTTA‑TTTGGGGGTTTAGAattttt > 1:275843‑M2/160‑250 (MQ=255) ctctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttTCCGTTTCA‑GTTTTTTTAAAGCTTGTGGTGGAAAGGCACTTGTTTTAGCCCCTTCCATCTGCGTTCTTTTTCT‑TTTGGGGttt‑agaatttttgtgggt > 1:175262‑M2/154‑244 (MQ=255) tctcagaattaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttTCCGTTTCA‑GGTTTTTTAAGGCTTTTGGTGAAAAGTCACTTGTTTTAGCCACTTCCATCTGCGTTT‑TTTTCT‑TTTTTGGGTTCAGAATTTTTGGGGttt > 1:412820‑M2/153‑251 (MQ=255) tctcagaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTAAGGGTTGTGGGGAAAAAACACTTGTTTTAGCCACTTCAATCTGCGTTC‑TTTTTA‑TTTTGGGTTTCAGAATTTTTGGGGttt > 1:285485‑M2/153‑251 (MQ=255) gaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCAGGTTTTTTAAA‑GCTTGTGGGGGAAAGGCACTTGTTTTAGCCACTTCAATCTGCGTTC‑TTTTTATTTTGGGGTTT‑AGAATTTTGgagggttttggg > 1:677091‑M2/148‑247 (MQ=255) gaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAgg < 1:260739‑M2/21‑1 (MQ=255) gaactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAgg < 1:167973‑M2/96‑1 (MQ=255) aactaagcgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAgg < 1:123418‑M2/103‑1 (MQ=255) cgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagctaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGtat < 1:750633‑M2/110‑1 (MQ=255) cgatatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGtat < 1:364045‑M2/110‑1 (MQ=255) atatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttTCCGTTTTA‑GTTTTTTTAAGGCTTGTGGTGAAAAGGCACTTGTTTTAGCCACTTCAATCTGCGTTCTTTTTCT‑TTTGGGGTTT‑AGAATTTTTGGGggtttaggttttgataaag > 1:409847‑M2/138‑243 (MQ=255) atatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGtat < 1:49535‑M2/110‑1 (MQ=255) tatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGc < 1:310254‑M2/115‑1 (MQ=255) tatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGc < 1:339877‑M2/115‑1 (MQ=255) tatggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGc < 1:565867‑M2/115‑1 (MQ=255) atggcacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCg < 1:833683‑M2/116‑1 (MQ=255) cacgcacaatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGAttt < 1:62849‑M2/120‑1 (MQ=255) caatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTAAAGCTTGTGGGGAAAAGGCACTTGTTTTAGCCACTTCCATCTGCGGTC‑TTTTCC‑TTTGGGGGTTCAGAATTTTGGAGGGTTTTGGGTTGTATAAAGCGATtttatgc > 1:194325‑M2/126‑247 (MQ=255) caatcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTgggg < 1:895058‑M2/79‑1 (MQ=255) atcacaccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTAAGGCTTGTGGTGGAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTTA‑TTTTGGGGTTCAGAATTTTTGaggtttttgg > 1:141888‑M2/124‑223 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTaaagcttgtgggggaaaa > 1:716238‑M2/118‑145 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTAAGGCTTTTGGGGAAAAGTCACTTGTTTCAGCCCCTTCAATCTGCGTTC‑TTTTTA‑TTTTGGGTTTCAGAATTTTTGAGGGTTTTTGTTTTTATAAGGCGATTTTTCGCCATCAAGc > 1:240126‑M2/118‑250 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑tt < 1:348598‑M2/74‑1 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑tt < 1:378310‑M2/74‑1 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAg < 1:803993‑M2/85‑1 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAgg < 1:540832‑M2/114‑1 (MQ=255) ccgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGc < 1:36136‑M2/115‑1 (MQ=255) cgctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGccc < 1:687848‑M2/135‑1 (MQ=255) gctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATc < 1:662489‑M2/59‑1 (MQ=255) gctaaacagcacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGAttt < 1:636200‑M2/120‑1 (MQ=255) cacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCAc < 1:606530‑M2/143‑1 (MQ=255) cacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCAc < 1:882264‑M2/143‑1 (MQ=255) cacgaaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACg < 1:393851‑M2/144‑1 (MQ=255) aaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttTCCGTTTCA‑GTTTTTTTAAGGCTTGTGGGGAAAAATCACTTGTTTTAGCCACCTCAATCTGCGTTT‑TTTTCA‑TTTtggg > 1:8083‑M2/103‑181 (MQ=255) aaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGtt < 1:386250‑M2/105‑1 (MQ=255) aaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCCTTTTA‑GTTTTTTTAAGGGTTGTGGGGAAAAGACACTTGTTTCAGCCCCTTCAATATGCGTTT‑TTTTTA‑TTTGGGGGTTCAGAAATTTTGAGGGTTTTGGTTTGTATAAGGCGGTTTTTCGCCATCAAGCCCTCTTTTACGAAAgg > 1:792754‑M2/103‑251 (MQ=255) aaaatagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCCGTTCC‑GTTTTTTAAaggg > 1:818448‑M2/103‑123 (MQ=255) atagacaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCttt < 1:449009‑M2/140‑1 (MQ=255) acaaagccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTcc < 1:157348‑M2/156‑1 (MQ=255) gccaagccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttccccgttcag > 1:376129‑M2/91‑93 (MQ=255) gccgcaggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑Gttt < 1:10832‑M2/13‑1 (MQ=255) caggaaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCC‑GTTTTTTTAAGGCTTGTGGGGAAAAGGCACTTTTTTTAGCCCCTTTCATCTGCGCTT‑TTTTCA‑TTTGGGGGTTCAGAATTTTGGAGGTTTTTGGTTTGTATAAGGGGATTTTTCGCCATCAAGCCCCCTTTCCCGAAAGGCTTTTCCAATAAATGacttta > 1:474698‑M2/82‑249 (MQ=255) aaaaggaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGaa < 1:130436‑M2/173‑1 (MQ=255) gaatttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttTCCGTTTCA‑GGTTTTTTAAGGCTTGTGGGGAAAAGACACTTGTTTCAGCCCCTTCAATCTGCGTTC‑TTTTTA‑TTTGGGGGTTCAGAATTTTGGAGGGTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAACCCTCTTTTCCGGAAGGCTTTTTCAATAAAATACTTGAGAAAGAGaa > 1:63868‑M2/73‑251 (MQ=255) tttaccctatccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATc < 1:690627‑M2/182‑1 (MQ=255) ctatccgatggcaaagggctttatctgttggttaaacccaatgggtctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGGGAAAAATCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGGTTCAGAATTTTGGAGGGTTTAGGGTTGTATAAAGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCtgatga > 1:282367‑M2/64‑251 (MQ=255) atccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATc < 1:437347‑M2/59‑1 (MQ=255) atccgatggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATc < 1:544365‑M2/182‑1 (MQ=255) ggcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAgg < 1:869470‑M2/103‑1 (MQ=255) gcaaagggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAAGCTTGTGGTGGAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTTATTTTGGGGTTT‑AGAATTTTGGAGGGTTTTGGGTTGTATAAAGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTTCAATAAATGACTTGAGAAAGAGAAAACTGATGAAATTTagcta > 1:179416‑M2/54‑249 (MQ=255) ggctttatctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGctaccgct < 1:12486‑M2/203‑4 (MQ=255) atctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATAc < 1:778861‑M2/210‑1 (MQ=255) atctgttggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATAc < 1:865133‑M2/210‑1 (MQ=255) ggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATc < 1:732923‑M2/59‑1 (MQ=255) ggttaaacccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACg < 1:538363‑M2/175‑1 (MQ=255) ttaagcccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATcc < 1:110598‑M2/218‑1 (MQ=255) acccaatggggctaagttatggcggtttCCCGTTTCA‑GTTTTTTTAAGGCTTGTGGGGAAAAGGCACTTGTTTTAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGGTTCAGAATTTTTGAGGGTTTAGGGTTTTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAAGcttttt > 1:719533‑M2/29‑182 (MQ=255) aagttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAgg < 1:240571‑M2/114‑1 (MQ=255) agttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCatat < 1:495177‑M2/208‑1 (MQ=255) gttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATg < 1:875122‑M2/164‑1 (MQ=255) ttatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑ttt < 1:776495‑M2/69‑1 (MQ=255) tatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATaa < 1:99925‑M2/240‑1 (MQ=255) tatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATaa < 1:836864‑M2/240‑1 (MQ=255) tatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATaa < 1:462969‑M2/240‑1 (MQ=255) tatggcggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATaa < 1:224668‑M2/240‑1 (MQ=255) cggtttCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCTACCGCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAAtttt < 1:460453‑M2/244‑1 (MQ=255) | TAGGCACTTTAGATTTTAGTTATACGTTTAGTTATACGGAGTAAAAACCAAATTGCACAAATCTAGCAATAACAAGGCTTACAAGCAACAATTCAGATAACCCCAGCCCACCAAAACATAGTCCAAAGCAAACTTTACAAAACCTAAAAGCCCTTGAAAATATTAACCTCAAGGGCTTTTTTATTTCCTAAGCGTTCCTATAAGATACTACCAAAGCCTTGAATTTTAGTTATACGATTCCCGTTTCA‑GTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTC‑TTTTCA‑TTTGGGGTTTCAGAATTTTGGAGGTTTTAGGTTTGTATAAGGCGATTTTACGCCATCAAGCCCTCTTTCACGAAAGGCTTTTCCAATAAATGACTTGAGAACGAGAAATCTGATGAAATTTAGCCACCTCTCATATACCGAAATCCTGCTCGGTGACCGGCTTGATAATTTT > 1/438238‑438720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |