Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	1	1,328,979	Δ641 bp	intergenic (+169399/+91318)	unknown → / ← unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	1	1328979	1329619	641	41 [0]	[0] 41	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1328978	0 (0.000)	41 (0.470)	27/426	1.9	100%	intergenic (+169398/+91959)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT
	?	1	1329620 =	0 (0.000)					intergenic (+170040/+91317)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

AAACTGAGTTTTAAACACGACTTTCACCTCTTTTGAGATTTGGGTAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTACACCTTCAATTTCTTCGCTGGCGATGTTTTGATGTTCAATTTCTGAATCATAAAAAATTTCGCCAAACAAATAACTTGCCGCTGGTTCATGGATTTCATCTGCCATTCGTCCCAAATCAGCCACGCGCACCGCTTTTGCTTTGCCGTTTTTATCGGTAAATTGCG  >  1/1328731‑1329143                                                                                                                                                                                                                                                        |                                                                                                                                                                      aaaCTGAGTTTTAAACACGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAgga                                                                                                                                                                    <  1:492655‑M1/251‑4 (MQ=255) aaaCTGAGTTTTAAACACGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAgga                                                                                                                                                                    >  1:485454‑M1/1‑248 (MQ=255)   aCTGAGTTTTAAACACGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaat                                                                                                                                                                  <  1:865805‑M1/251‑6 (MQ=255)         ttttAAACACGACTTTCACCTCTTGTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacat                                                                                                                                                             <  1:858713‑M1/250‑11 (MQ=255)                  cGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggt                                                                                                                                                   <  1:94995‑M1/251‑21 (MQ=255)                  cGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggt                                                                                                                                                   <  1:605010‑M1/251‑21 (MQ=255)                  cGACTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggt                                                                                                                                                   <  1:230783‑M1/251‑21 (MQ=255)                    aCTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggtt                                                                                                                                                  <  1:75313‑M1/250‑22 (MQ=255)                    aCTTTCACCTCTTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggtt                                                                                                                                                  <  1:571232‑M1/250‑22 (MQ=255)                              ctTTTGAGATTTGGGCAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagt                                                                                                                                       >  1:162789‑M1/1‑219 (MQ=255)                                          gggcaaataaacgttCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgccttt                                                                                                                           >  1:733705‑M1/5‑207 (MQ=255)                                                   aaCGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagac                                                                                                                  <  1:117197‑M1/251‑54 (MQ=255)                                                   aaCGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagac                                                                                                                  <  1:176467‑M1/251‑54 (MQ=255)                                                   aaCGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaat                                                                                                                                                                  >  1:212968‑M1/1‑198 (MQ=255)                                                           gCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaat                                                                                                                                                                  >  1:612904‑M1/1‑190 (MQ=255)                                                             gtgtTTGATTTTGCGTTCTTCGTCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaa                                                                                                                                                                   <  1:446118‑M1/192‑5 (MQ=255)                                                              tgtTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaagg                                                                                                       <  1:786107‑M1/251‑65 (MQ=255)                                                               gtTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggtttt                                                                                                                                                <  1:629056‑M1/209‑24 (MQ=255)                                                                   gATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgc                                                                                                                       <  1:626861‑M1/230‑49 (MQ=255)                                                                      tttGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcggg                                                                                               <  1:813174‑M1/251‑73 (MQ=255)                                                                                   ccTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATACGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttca                                                                                  >  1:71499‑M1/1‑166 (MQ=255)                                                                                      tttCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacct                                                                               <  1:364251‑M1/251‑89 (MQ=255)                                                                                      tttCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatc                                                                                                                                          <  1:620831‑M1/192‑30 (MQ=255)                                                                                       ttCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagac                                                                                                                  <  1:185152‑M1/215‑54 (MQ=255)                                                                                           tAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttga                                                                          >  1:901634‑M1/1‑158 (MQ=255)                                                                                            aaGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgat                                                                         <  1:37742‑M1/251‑95 (MQ=255)                                                                                            aaGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacat                                                                                                                                                             >  1:410335‑M1/1‑157 (MQ=255)                                                                                                     gAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacat                                                                                                                                                             >  1:355201‑M1/1‑148 (MQ=255)                                                                                                         cATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactg                                                              >  1:531151‑M1/1‑144 (MQ=255)                                                                                                          aTCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactg                                                              >  1:663044‑M1/1‑143 (MQ=255)                                                                                                                                     aTTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaat                                                                                                                                                                  >  1:896995‑M1/1‑116 (MQ=255)                                                                                                                                             tctcGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatc                        <  1:7521‑M1/251‑144 (MQ=255)                                                                                                                                                     gttttggttttgACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaatt                >  1:735720‑M1/1‑100 (MQ=255)                                                                                                                                                      ttttggttttgACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaattt               <  1:186513‑M1/251‑153 (MQ=255)                                                                                                                                                            ttttgACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaatttattgg          <  1:403156‑M1/250‑158 (MQ=255)                                                                                                                                                                   gATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGTGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaatttattggtaatacta  >  1:371442‑M1/1‑86 (MQ=255)                                                                                                                                                                   gATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaatttattggtaatacta  >  1:272779‑M1/1‑86 (MQ=255)                                                                                                                                                                    atatAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatccgccaatttattggtaatacta  >  1:490172‑M1/1‑85 (MQ=255)                                                                                                                                                                    atatAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcc                                                                                                                              <  1:900655‑M1/126‑42 (MQ=255)                                                                                                                                                                                                  cctcctGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagac                                                                                                                  <  1:640665‑M1/108‑54 (MQ=255)                                                                                                                                                                                                                                         ttAGTAAACACGGTTAggaataacatcgcctttggttttcgcatcagtgattttgcctttatgcaagactgcggcaaaggcattcgggaacagctgtttcacctgttgataagcggcactgctgacgaaatgatcgttatcatcaatcagctgattatc                        <  1:595683‑M1/159‑144 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                      AAACTGAGTTTTAAACACGACTTTCACCTCTTTTGAGATTTGGGTAAATAAACGTTCGGCGTGTTTGATTTTGCGTTCTTCGCCTTTTCGTAAGTTATCCGAACCATCCACGCCTTTTGCTTCAATCACAAAATTCAAAATCTCGCCTGTTTTGGTTTTGACGATATAGGCAAAATCAGGGGAATAAGTCCCGCCTCCTGCCACGGGGATTTTGATAGAATTTTTCGGGATTTTAGTAAACACGGTTACACCTTCAATTTCTTCGCTGGCGATGTTTTGATGTTCAATTTCTGAATCATAAAAAATTTCGCCAAACAAATAACTTGCCGCTGGTTCATGGATTTCATCTGCCATTCGTCCCAAATCAGCCACGCGCACCGCTTTTGCTTTGCCGTTTTTATCGGTAAATTGCG  >  1/1328731‑1329143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑