Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	1	1,013,721	332 bp→CATTCTAATGAACATATTTGGT		[unknown]	[unknown]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	1	1013721	1014052	332	35 [0]	[0] 31	[unknown]	[unknown]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1013720	0 (0.000)	28 (0.370) +CATTCTAATGAACATATTTGGT	24/386	1.9	100%	intergenic (‑1/‑230)	unknown/unknown	hypothetical protein/hypothetical protein
	?	1	1014053 =	0 (0.000)					coding (104/273 nt)	unknown	hypothetical protein

GTAAGATCCTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATAGCCATTGTTATCAGTTTTACTGTCATCATAAATAATGCATCTGTGATGAATATATTATCTCCCACAATGCATTCAACAATACCTTCATAAGTAAAGCGTGAATAAGGGTATAAAATTAAAGAAACTAAACCATAAACAATATTTGTTGCCAAAATATAATAGTTTCCACTTCTGTTGTAAGGTTGACAACCAAAATTCAAGATACA  >  1/1013478‑1013920                                                                                                                                                                                                                                                   |                                                                                                                                                                                                         gTAAGATCCTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaa                                                                                                                                                                                                  >  1:586244‑M1/1‑243 (MQ=255)      aTCCTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatga                                                                                                                                                                                               <  1:422553‑M1/249‑12 (MQ=255)       tCCTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaaca                                                                                                                                                                                            >  1:391906‑M1/1‑237 (MQ=255)         cTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatg                                                                                                                                                                                                >  1:2803‑M1/1‑235 (MQ=255)              tGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttgg                                                                                                                                                                                     <  1:691345‑M1/251‑22 (MQ=255)                             cGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTc                                                                                                                                                                                                         >  1:449602‑M1/1‑215 (MQ=255)                               aCAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattac                                                                                                                                                                     <  1:133228‑M1/250‑38 (MQ=255)                                                          aaaaaGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctac                                                                                                                                          <  1:6777‑M1/250‑65 (MQ=255)                                                                                                 aaaaaTAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaat                                                                                                                                                                <  1:23507‑M1/189‑43 (MQ=255)                                                                                                  aaaaTAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattctttt                                                                                                 >  1:630386‑M1/1‑146 (MQ=255)                                                                                                   aaaTAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattct                                                                                                    >  1:628832‑M1/1‑145 (MQ=255)                                                                                                           gcgcTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaa                                                                                        >  1:119419‑M1/1‑137 (MQ=255)                                                                                                              cTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtc                                                                                                                                             >  1:89356‑M1/1‑134 (MQ=255)                                                                                                                         ccTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccataga                                                                          >  1:391486‑M1/1‑123 (MQ=255)                                                                                                                            ttttATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattac                                                                                                                                                                     >  1:558624‑M1/1‑120 (MQ=255)                                                                                                                              ttattaTTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattct                                                                                                    >  1:692079‑M1/1‑118 (MQ=255)                                                                                                                               tattatTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagatcgtcg                                                                    <  1:168905‑M1/251‑135 (MQ=255)                                                                                                                                      gttgATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgt                                                                                                              >  1:311103‑M1/1‑110 (MQ=255)                                                                                                                                              tCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattac                                                                                                                                                                     <  1:480069‑M1/139‑38 (MQ=255)                                                                                                                                                                  ttCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattg                                                                                             <  1:229950‑M1/191‑110 (MQ=255)                                                                                                                                                                    cTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagatcgtcgtttggatatttttgaatttattgaatactataagggg                               <  1:336747‑M1/251‑172 (MQ=255)                                                                                                                                                                       gTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggt                                                                                                                >  1:612033‑M1/1‑77 (MQ=255)                                                                                                                                                                       gTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacag                                                                                                                                        <  1:380337‑M1/143‑67 (MQ=255)                                                                                                                                                                                 atagaaatagaGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacag                                                                                                                                        <  1:721081‑M1/133‑67 (MQ=255)                                                                                                                                                                                 atagaaatagaGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattct                                                                                                                                                                                                    <  1:679146‑M1/73‑7 (MQ=255)                                                                                                                                                                                  tagaaatagaGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacag                                                                                                                                        <  1:325156‑M1/132‑67 (MQ=255)                                                                                                                                                                                    gaaatagaGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagac                                                                                >  1:178264‑M1/1‑64 (MQ=255)                                                                                                                                                                                     aaatagaGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatag                                                                           <  1:338890‑M1/190‑128 (MQ=255)                                                                                                                                                                                           agCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagatcgtcgtttggata                                                            >  1:89654‑M1/1‑57 (MQ=255)                                                                                                                                                                                                    aGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagt                                                                                      <  1:14385‑M1/164‑117 (MQ=255)                                                                                                                                                                                                             ggTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagatcgtcgtttggatatttttgaatttattgaatactataaggg                                >  1:497709‑M1/1‑39 (MQ=255)                                                                                                                                                                                                             ggTGAGATAAATAAAGCAAAAAAGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagat                                                                         >  1:360054‑M1/1‑39 (MQ=255)                                                                                                                                                                                                                                   aGTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcgagaccatagatcgtcgtttggatatttttgaatttattgaatactataagggggtgggagctaggtcctgttagggttttac  <  1:685670‑M1/217‑201 (MQ=255)                                                                                                                                                                                                                                    gTAACAGATATCCATTcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtg                                                                                                               <  1:58329‑M1/107‑92 (MQ=255)                                                                                                                                                                                                                                                cattcattctaatgaacatatttggttaagagaattattacttaatcgtcgaaataaattaggtctacagtgcgcattttatgaaaaattgggtgttgtgtattcttttattgataaagtcg                                                                                    <  1:628570‑M1/122‑119 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                         GTAAGATCCTTGCTGATATCGCCGTATTCGACAAAGTGGCTTTCGCTGCATTAGTTGAAAAAGCAAAATCTGCACTTTAATTTTAAAGTTTAGATAAAAAATAAGGGCGCTCATGAGCGTCCTTTTTATTATTGTTGATTTTCTGATTGATTGGCTATTTTTTCTTGTTTTGAATAATAGAAATAGAGCCAAATGAGTCCGATTGGTGAGATAAATAAAGCAAAAAAGTAACAGATAGCCATTGTTATCAGTTTTACTGTCATCATAAATAATGCATCTGTGATGAATATATTATCTCCCACAATGCATTCAACAATACCTTCATAAGTAAAGCGTGAATAAGGGTATAAAATTAAAGAAACTAAACCATAAACAATATTTGTTGCCAAAATATAATAGTTTCCACTTCTGTTGTAAGGTTGACAACCAAAATTCAAGATACA  >  1/1013478‑1013920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑