Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	1	907,402	Δ4 bp	intergenic (+394/+108)	unknown → / ← unknown	hypothetical protein/hypothetical protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 907401	0 (0.000)	23 (0.270)	21/430	2.7	100%	intergenic (+393/+112)	unknown/unknown	hypothetical protein/hypothetical protein
	?	1	907406 =	0 (0.000)					intergenic (+398/+107)	unknown/unknown	hypothetical protein/hypothetical protein

CGATAGAAGCTTAATTTGATATATAAGATTGTTCGCTTATAAAAAATTTTTAGGTGTTAGAACCTTAGATATCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATTCCCCCCACTCGATTATTTATCGGCGACATAATGCAATGATTTATCAATGAATAAAATTGATATTGTTTATTCTATACCGTCATTTTTACCGTCGTTGGAAGAAAATGCCATCAAGAACGTTCAGCAAGCCAAGTATCAATATCAGATTTTCTCCACGCTACACGCCCCATGGACGCTTTAACACTTTTGGGGAATTTACCTTGTCTCATCATACGCCAAATTGTTGTGTCGCTCAAGCTGGTG  >  1/907171‑907645                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     cGATAGAAGCTTAATTTGATATATAAGATTGTTCGCTTATAAAAAATTTTTAGGTGTTAGAACCTTAGATATCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcgg                                                                                                                                                                                                                                  >  1:579898‑M1/1‑231 (MQ=255)                     atataAGATTGTTCGCTTATAAAAAATTTTTAGGTGTTAGAACCTTAGATATCTGATGGCACTGGCGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgattta                                                                                                                                                                                                              >  1:606548‑M1/1‑211 (MQ=255)                     atataAGATTGTTCGCTTATAAAAAATTTTTAGGTGTTAGAACCTTAGATATCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattat                                                                                                                                                                                                                                         <  1:418394‑M1/224‑14 (MQ=255)                                                  ttAGGTGTTAGAACCTTAGATATCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattc                                                                                                                                                                                 <  1:282296‑M1/251‑70 (MQ=255)                                                                        tCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccac                                                                                                                                                                                                                                                 <  1:815303‑M1/165‑6 (MQ=255)                                                                                                     taGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattat                                                                                                                                                                                                                                         >  1:377494‑M1/1‑131 (MQ=255)                                                                                                             gtgtTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagcca                                                                                                                      >  1:139352‑M1/1‑123 (MQ=255)                                                                                                                         gttgtACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattattt                                                                                                                                                                                                                                       <  1:658348‑M1/126‑16 (MQ=255)                                                                                                                               cATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatat                                                                                                           <  1:663575‑M1/244‑140 (MQ=255)                                                                                                                                     aTGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctcca                                                                                              >  1:51365‑M1/1‑99 (MQ=255)                                                                                                                                     aTGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatca                                                                                                                                                                                                           >  1:223108‑M1/1‑99 (MQ=255)                                                                                                                                        cTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacg                                                                                            >  1:209946‑M1/1‑96 (MQ=255)                                                                                                                                                cccTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgcc                                                                                   <  1:189809‑M1/251‑164 (MQ=255)                                                                                                                                                  cTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgccc                                                                                  >  1:469383‑M1/1‑86 (MQ=255)                                                                                                                                                  cTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattc                                                                                                                                                                                 <  1:737034‑M1/155‑70 (MQ=255)                                                                                                                                                          gTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGCATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctatac                                                                                                                                                                            >  1:490196‑M1/1‑78 (MQ=255)                                                                                                                                                              gCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgccccatggacgcttta                                                                     >  1:267202‑M1/1‑74 (MQ=255)                                                                                                                                                                                                    taaataaaCAGAAAATTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaat                                                                                                                                               >  1:521727‑M1/1‑36 (MQ=255)                                                                                                                                                                                                                 aaTTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgccccatggacgctttaacacttttggggaatttaccttgtctcatcatacgccaaattgttgtgtcg                  >  1:353600‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                  aTTATATGAAATGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctc                                                                                                <  1:151176‑M1/172‑151 (MQ=255)                                                                                                                                                                                                                          aaaTGGGGAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtat                                                                                                                 >  1:94481‑M1/1‑14 (MQ=255)                                                                                                                                                                                                                                 gAAGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgccccatggacgctttaacacttttggggaatttaccttgtctcatcatacgccaaattgttgtgtcgctcaagctggtgactt  >  1:534059‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                  aaGTATcccactcgattatttatcggcgacataatgcaatgatttatcaatgaataaaattgatattgtttattctataccgtcatttttaccgtctttggaagaaaatgccatcaagaacgttcagcaagccaagtatcaatatcagattttctccacgctacacgccccatggacgctttaacacttttggggaatttaccttgtctcatcat                                     >  1:573166‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     CGATAGAAGCTTAATTTGATATATAAGATTGTTCGCTTATAAAAAATTTTTAGGTGTTAGAACCTTAGATATCTGATGGCACTGGAGTAAAAACCTGATATAGATCGTGTGTTGAACGATGTTGTACATTTGATGCTAAAGTGCCCTACTTGGGTATGCTAATTACGTAAGAGCGGTAATTATATAAAACGAATTTAAATAAACAGAAAATTATATGAAATGGGGAAGTATTCCCCCCACTCGATTATTTATCGGCGACATAATGCAATGATTTATCAATGAATAAAATTGATATTGTTTATTCTATACCGTCATTTTTACCGTCGTTGGAAGAAAATGCCATCAAGAACGTTCAGCAAGCCAAGTATCAATATCAGATTTTCTCCACGCTACACGCCCCATGGACGCTTTAACACTTTTGGGGAATTTACCTTGTCTCATCATACGCCAAATTGTTGTGTCGCTCAAGCTGGTG  >  1/907171‑907645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.