| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 1633644 | 80 (0.980) | 27 (0.290) +GTGTCC |
18/406 | 3.0 | 40.3% | intergenic (‑19/‑132) | unknown/unknown | hypothetical protein/hypothetical protein |
| ? | 2 | 102 = | 0 (0.000) | intergenic (‑20/+52) | unknown/unknown | hypothetical protein/Excinuclease ABC subunit A | |||||
TTCCGGGATTTCAATCGCTTTCTTTTTCATCTTTGGCTTCACTATTTTAGGGCGTTGAGGGTTTATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAAGGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/1633395‑1633644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTCCAGGTTTTGGGGTGCAGAGCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCCAGTCGGCGGTTTTAATCACGTCTA > 2/102‑311 |||||| TTCCGGGATTTCAATCGCTTTCTTTTTCATCTTTGGCTTCACTATTTTAGGGCGTTGAGGGTTTATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAATGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGG < 1:736451/251‑1 GGGATTTCAATCGCTTTCTTTTTCATCTTTGGCTTCACTATTTTAGGGCGTTGAGGGTTTATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAATGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGT > 1:901112/1‑250 GATTTCAATCGCTTTCTTTTTCATCTTTGGCTTCACTATTTTAGGGCGTTGAGGGTTTATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAATGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCC < 1:879860/250‑1 ATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAATGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGG < 1:578082/187‑1 aacgagaaatctgATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTG < 1:215795/238‑1 aacgagaaatctgATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCCTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTG < 1:275174/238‑1 ctgATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGA < 1:110595/193‑1 AGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATT > 1:211689/1‑251 TACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAG > 1:728117/1‑172 ACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGC > 1:891314/1‑250 CCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGC < 1:665739/199‑1 AAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTC < 1:385843/251‑1 ATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGG > 1:711596/1‑251 ATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGC < 1:300011/114‑1 CGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGAT < 1:492406/251‑1 CGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGAT > 1:625345/1‑251 GGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCC > 1:464158/1‑173 CTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAAT > 1:699774/1‑251 CTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAA < 1:817441/94‑1 GTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATC > 1:98741/1‑250 GTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATC > 1:470985/1‑250 TTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCC < 1:792303/250‑1 TTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCC < 1:261979/250‑1 TTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCC < 1:211211/250‑1 TTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCC < 1:163099/250‑1 TTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATC < 1:896379/241‑1 GGTAAGAGTAAGACATAATCTGCACCTCAAATTAGGTGTCCGTGTCCAGGTTTTGGGGTGCAGATCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCCAGTCGGCGGTTTTAATCACGTCTA > 1:776130/1‑251 |||||| TTCCGGGATTTCAATCGCTTTCTTTTTCATCTTTGGCTTCACTATTTTAGGGCGTTGAGGGTTTATATAAGGGGATTTTACGCCATTAAGCCCTCTTTCACGAAAGGCTTTTAGCCAATAAATGACGAGCGAATGGGAGATTTTATGAAGTTTCGCCACCTCACGGATACCAAAATCCTGCTCGGTGACCTGTTTGATAGTTTTTAAACGAAATTGGTAAGAGTAAGACATAATCTGCACCTCAAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/1633395‑1633644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTCCAGGTTTTGGGGTGCAGAGCAAAGTGCGGTCGGAAAATGCAGCGTTTTTAGCCTTTTGCCAAAATCTCTTTGAGGAAGCGGGCGGTGTGCGAGCCCTCCATTTTGGCAACCTGTTCCGGTGTGCCGGTCGCGATAATTTGTCCGCCGCCGCTGCCGCCTTCAGGGCCGAGATCTACAATCCAGTCGGCGGTTTTAATCACGTCTA > 2/102‑311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |