New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	89648 =	27 (0.310)	52 (0.620)	36/412	1.0	80.1%	intergenic (‑21/+83)	unknown/unknown	hypothetical protein/hypothetical protein
	?	1	602373 =	0 (0.000)					intergenic (‑258/‑35)	unknown/unknown	Phage repressor protein cI/hypothetical protein

AAAAGCGATTAGCACAAACGCTAACAGCTACAGCAAAGACAACTATAAACAGGTATTGTTCAAACTCCGCCCGGAAGTGGTAGATGAATTCGACGCAATCTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTTTTAAATATTTACACAAAACTTACAAAATAGTGGTTGCGTAGTTATATTATATAATATAATATTAATCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  1/89905‑89648 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattaacgCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATGAAAAAAACACTTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTTTACAAGATGCTGGAGCTAAATTTAATAGAGA  >  1/602373‑602616                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAAAGCGATTAGCACAAACGCTAACAGCTACAGCAAAGACAACTATAAACAGGTATTGTTCAAACTCCGCCCGGAAGTGGTCGATGAATTCGACGCAATCTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATG                                                                                                                                                                                                                                                             <  1:632469/251‑1                     CTAACAGCTACAGCAAAGACAACTATAAACAGGTATTGTTCAAACTCCGCCCGGAAGTGGTCGATGAATTCGACGCAATCTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGAT                                                                                                                                                                                                                                         <  1:622855/251‑1                                                                     GCCCGGAAGTGGTCGATGAATTCGACGCAATCTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGA                                                                                                                                                                                              >  1:7484/1‑245                                                                                                    CTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACCCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGA                                                                                                                                                                                              <  1:438944/214‑1                                                                                                       CAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTAT                                                                                                                                                       <  1:753254/250‑1                                                                                                                   AGTATCAAGAGCGGAGATGTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATGAA                                                                                                                                                                                                              >  1:852092/1‑184                                                                                                                                     GTTCCGTCGACTCTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTA                                                                                                                        >  1:796452/1‑251                                                                                                                                                 cTTAAATATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTG                                                                                                                                                                  <  1:190961/196‑1                                                                                                                                                       TATTTACACAAAACTTACAAAATAGTCGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATG                                                                                                                                                      >  1:108238/1‑203                                                                                                                                                                               gtcGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGT                                                                              >  1:84513/4‑251                                                                                                                                                                                tcGTTGCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGG                                                                               <  1:695265/247‑1                                                                                                                                                                                     GCGTAGTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATAC                                                                                                                                                                             <  1:748855/150‑1                                                                                                                                                                                          GTTATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGG                                                                                                                              <  1:193660/192‑1                                                                                                                                                                                             ATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCT                                                                                                       >  1:329059/1‑212                                                                                                                                                                                             ATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACAT                                                                                                                          >  1:876911/1‑193                                                                                                                                                                                             ATATTATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGAT                                                                                                                                                          >  1:209148/1‑161                                                                                                                                                                                                  ATATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAAT                                                                                                                                              <  1:60624/168‑1                                                                                                                                                                                                    ATAATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTG                                                                                                                                                            <  1:678300/152‑1                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTG                                                      >  1:475782/1‑251                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTG                                                      >  1:641865/1‑251                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAG                                                            <  1:562869/245‑1                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAG                                                              <  1:566098/243‑1                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACT                                                                     >  1:788692/1‑236                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGAC                                                                      <  1:492372/235‑1                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGAC                                                                      <  1:35448/235‑1                                                                                                                                                                                                       ATATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAAT                                                                                                  >  1:808483/1‑207                                                                                                                                                                                                        TATAATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGC                                                     <  1:645656/251‑1                                                                                                                                                                                                           AATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATAC                                                                                                                                                                             >  1:40799/1‑128                                                                                                                                                                                                            ATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGA                                                  >  1:498389/1‑250                                                                                                                                                                                                            ATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGA                                                  >  1:158562/1‑250                                                                                                                                                                                                            ATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACAT                                                                                                                          >  1:575812/1‑178                                                                                                                                                                                                            ATATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAA                                                                                                                                                                                                                    >  1:759916/1‑89                                                                                                                                                                                                             TATTAACCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCG                                                                                                                                            <  1:774786/159‑1                                                                                                                                                                                                                    CACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGC                                               <  1:885419/245‑1                                                                                                                                                                                                                     ACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTG                                        >  1:122286/1‑251                                                                                                                                                                                                                        TAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGAT                                     <  1:220036/251‑1                                                                                                                                                                                                                        TAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGAT                                     <  1:298981/251‑1                                                                                                                                                                                                                        TAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGA                                      <  1:76935/250‑1                                                                                                                                                                                                                          AGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGC                                                                                                        >  1:360021/1‑182                                                                                                                                                                                                                          AGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCG                                                                                                                                            <  1:520345/146‑1                                                                                                                                                                                                                          AGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAG                                                                                                                                                                                                                                           >  1:466851/1‑52                                                                                                                                                                                                                           GCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGAC                                                                      <  1:18003/215‑1                                                                                                                                                                                                                           GCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGA                                                                          <  1:202420/211‑1                                                                                                                                                                                                                            CAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACG                                                >  1:369466/1‑236                                                                                                                                                                                                                               GAGGGACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGC                                                                                                                 <  1:638157/168‑1                                                                                                                                                                                                                                   GACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAGA                          >  1:736919/1‑251                                                                                                                                                                                                                                    ACGCCGCACCGAAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATT                                                                                                            <  1:851134/168‑1                                                                                                                                                                                                                                               AAGCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGAT                                     >  1:816247/1‑228                                                                                                                                                                                                                                                 GCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAGATGCGGGAGCTAAAT            >  1:128138/1‑251                                                                                                                                                                                                                                                 GCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGAC                                                                                                                                     >  1:421652/1‑130                                                                                                                                                                                                                                                 GCTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTG                                                                                                                                                            >  1:422687/1‑107                                                                                                                                                                                                                                                  CTTATAAATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAG                           >  1:33177/1‑235                                                                                                                                                                                                                                                       caaaGATTAACGAGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGT                                                                                                                                                                 >  1:844163/5‑96                                                                                                                                                                                                                                                        AATGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAGATGCGGGAGCTAAATTTAATAG     <  1:599478/251‑1                                                                                                                                                                                                                                                          TGATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAGATGCGGGAGCTAAATTTAATAGAG   >  1:576347/1‑251                                                                                                                                                                                                                                                           GATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCT                                                                                                                                                             <  1:647070/96‑1                                                                                                                                                                                                                                                            ATTAACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTCTACAAGATGCGGGAGCTAAATTTAATAGAGA  <  1:755370/250‑1                                                                                                                                                                                                                                                                ACGCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATG‑AAAAAACACCTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAAT                                                                                                  <  1:300971/150‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAAAGCGATTAGCACAAACGCTAACAGCTACAGCAAAGACAACTATAAACAGGTATTGTTCAAACTCCGCCCGGAAGTGGTAGATGAATTCGACGCAATCTGCAAAACCGAGGGAGTATCAAGAGCGGAGATGTTCCGTCGACTTTTAAATATTTACACAAAACTTACAAAATAGTGGTTGCGTAGTTATATTATATAATATAATATTAATCACGTAAGCAAGAGGGACGCCGCACCGAAGCTTATAAATGATTAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  1/89905‑89648 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattaacgCGCGGCAGGAGATACAAAAATGACAACTCAAAAATATGAAAAAAACACTTTTAAGATTTGAAATCTTTCATACAATCAAAAGTGTAGCTGATTATGTAAATAATCGTGATGACATTGCGGACATTATCGCTGCAGATTACGCTTTAATCGCATGCGAAGAAAGCGGGTATGATGACTATTCGAGAGAATGTGCAGACGCACACTTGGATTTTTTACAAGATGCTGGAGCTAAATTTAATAGAGA  >  1/602373‑602616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.