New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	1754063 =	192 (0.830)	4 (0.020)	4/266	15.3	2.3%	intergenic (+8/‑60)	C7Y58_08530/C7Y58_08535	RNA 2'‑phosphotransferase/excinuclease ABC subunit UvrA
	?	CP028101	1754096 =	167 (0.810)					intergenic (+41/‑27)	C7Y58_08530/C7Y58_08535	RNA 2'‑phosphotransferase/excinuclease ABC subunit UvrA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAATTTTTATAATACATACTAATTATATCATATTTATAATAAAAAAAGGATTAAAGTTTTTAAAACTTTAATCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1754140‑1754063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactttaatcctttTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTAATGATAGATAAAATTACTATAAAGGGAGCAAGGCAACATAATTTAAAAAA  >  CP028101/1754096‑1754217                                                                                                                                                                                                          ATAATTTTTATAATACATACTAATTATATCATATTTATAATAAAAAAAGGATTAAAGTTTTTAAAACTTTAATCCTTTTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTA                                                    >  1:2879203/1‑150    ATTTTTATAATACATACTAATTATATCATATTTATAATAAAAAAAGGATTAAAGTTTTTAAAACTTTAATCCTTTTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTAATG                                                 >  1:1774741/1‑150                                            AAAAAGGATTAAAGTTTTTAAAACTTTAATCCTTTTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTAATGATAGATAAAATTACTATAAAGGGAGCAAGGCAACATAATT         >  1:36793/1‑150                                                   ATTAAAGTTTTTAAAACTTTAATCCTTTTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTAATGATAGATAAAATTACTATAAAGGGAGCAAGGCAACATAATTTAAAAAA  >  1:355236/1‑150                                                                                                                                                                                                          ATAATTTTTATAATACATACTAATTATATCATATTTATAATAAAAAAAGGATTAAAGTTTTTAAAACTTTAATCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1754140‑1754063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactttaatcctttTTTTATTATAAATATGATATAATTAGTATGTATTATAAAAATTATATTGAAAGGAATAGTGAAATTAAGCTAATGATAGATAAAATTACTATAAAGGGAGCAAGGCAACATAATTTAAAAAA  >  CP028101/1754096‑1754217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.