New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	14211 =	NA (NA)	4 (0.020)	4/296	16.2	1.6%	coding (77/99 nt)	C7Y58_00075	hypothetical protein
	?	CP028101	272963 =	246 (1.060)					intergenic (+25/+25)	C7Y58_01450/C7Y58_01455	DNA mismatch repair protein MutT/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAATTTATGTAATATACTTTTTTAAATTAAAAATGACACTAAATTACAAAAAAATGTTTTTTAGTGTCATTTTTCTTTTTGGGCTCAATTATTTAATTTGCAACAGCCCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/14320‑14211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAACAGTTACTGGTACTTCTTTAAGGTCTCCTAAAGTTAAGATTCCTTCTGCACCTTTCATAGCAACTTCGTTTCCAGCTTCATCTGCATATCTTTCTCCAGA  >  CP028101/272963‑273101                                                                                                                                                                                                                                                           AAAATTTATGTAATATGCTTTTTTAAATTAAAAATGACACTAAATTACAAAAAAATGTTTTTTAGTGTCATTTTTCTTTTTGGGCTCAATTATTTAATTTGCAACAGCCCCTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAAC                                                                                                     <  1:2516325/150‑1                                              TACAAAAAAATGTTTTTTAGTGTCATTTTTCTTTTTGGGCTCAATTATTTAATTTGCAACAGCCCCTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAACAGTTACTGGTACTTCTTTAAGGTCTCCTAAAGTTAAGATTCCTTC                                                        <  1:2815374/150‑1                                                                                        AATTATTTAATTTGCAACAGCCCCTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAACAGTTACTGGTACTTCTTTAAGGTCTCCTAAAGTTAAGATTCCTTCTGCACCTTTCATAGCAACTTCGTTTCCAGCTTCATCTGCATA              <  1:1920563/150‑1                                                                                                    TGCAACAGCCCCTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAACAGTTACTGGTACTTCTTTAAGGTCTCCTAAAGTTAAGATTCCTTCTGCACCTTTCATAACAACTTCGTTTCCAGCTTCATCTGCATATCTTTCTCCAGA  >  1:472616/1‑150                                                                                                                                                                                                                                                           AAAATTTATGTAATATACTTTTTTAAATTAAAAATGACACTAAATTACAAAAAAATGTTTTTTAGTGTCATTTTTCTTTTTGGGCTCAATTATTTAATTTGCAACAGCCCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/14320‑14211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTTATTTTAATTGCTTTTTAAAACTATTTAGCTTCAACAGTTACTGGTACTTCTTTAAGGTCTCCTAAAGTTAAGATTCCTTCTGCACCTTTCATAGCAACTTCGTTTCCAGCTTCATCTGCATATCTTTCTCCAGA  >  CP028101/272963‑273101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.