New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen14_136 1 =0 (0.000)72 (0.860) 35/218 0.5 100% intergenic (–/+298) –/intA_4 –/Prophage integrase IntA
?Xen14_170 = 580 0 (0.000)intergenic (–/–) –/– –/–

ACCGGGGAAGAGAATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTGAAGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T  >  Xen14_170/439‑619
                                                                                                                                             |                                                                                                                                                    
acCGGGGAAGAGAATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCg                                                                                                                                              <  1:86708/150‑1 (MQ=255)
acCGGGGAAGAGAATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCg                                                                                                                                              <  1:86706/150‑1 (MQ=255)
          agaATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTc                                                                                                                                    <  1:53147/150‑1 (MQ=255)
           gaATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGa                                                                                                                                          <  1:1019947/143‑1 (MQ=255)
                 tttGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCGTCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCtgat                                                                                                                             <  1:2693368/150‑1 (MQ=255)
                 tttGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAATTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCtgat                                                                                                                             <  1:2277412/150‑1 (MQ=255)
                 tttGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAATTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCtgat                                                                                                                             <  1:2277414/150‑1 (MQ=255)
                    gCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTctgct                                                                                                                                <  1:86701/144‑1 (MQ=255)
                    gCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTctgct                                                                                                                                <  1:521479/144‑1 (MQ=255)
                     ccGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAATGCAGAGTCTTACGCTACCGTCGATCTCTCTGTTGATGAcc                                                                                                                         >  1:2261583/1‑150 (MQ=255)
                       gTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTg                                                                                                                       >  1:16267/1‑150 (MQ=255)
                       gTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTg                                                                                                                       >  1:16268/1‑150 (MQ=255)
                          aaaGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTGAAg                                                                                                                    <  1:1950127/150‑1 (MQ=255)
                              tGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTGAAGGAAc                                                                                                                <  1:3157838/150‑1 (MQ=255)
                              tGCAGGAAAGATTAAAATAATACGGCATCAAGTGTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTGAAGGAAc                                                                                                                <  1:3157837/150‑1 (MQ=255)
                                  ggAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgca                                                                                                            >  1:3349160‑M2/1‑108 (MQ=255)
                                  ggAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgca                                                                                                            >  1:3432637‑M2/1‑108 (MQ=255)
                                    aaaGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTctgc                                                                                                                                 >  1:3236279/1‑127 (MQ=255)
                                    aaaGATGAAAATAATACGGCATCAAGTTTCGTCCAAAGAAGCCAGCGTCACCTCATCTTAACGGAAAGGTGGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcagg                                                                                                          >  1:2567929‑M2/1‑106 (MQ=255)
                                         ttAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaa                                                                                                     >  1:2063610‑M2/1‑101 (MQ=255)
                                               taataCGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcag                                                                                               <  1:1963011‑M2/150‑56 (MQ=255)
                                                     tgcATCAAGTTTCGTCCAAATAAGCCAGCGTCACCGCATATCAACGGAAAGGTTGAACGTTCCCAAAAGACAGACACAGCAGAGTCTTAcgctaccgtagatccttctgctgatgacctgaaggaactgcaggcagaatggcagcattac                                                                                         >  1:3809221‑M2/2‑89 (MQ=255)
                                                     ggCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACACAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattac                                                                                         >  1:3809220‑M2/1‑89 (MQ=255)
                                                      gCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattact                                                                                        <  1:102569‑M2/150‑63 (MQ=255)
                                                          cAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataa                                                                                    >  1:9174‑M2/1‑84 (MQ=255)
                                                                tCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactggga                                                                              <  1:271669‑M2/150‑73 (MQ=255)
                                                                tCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactggga                                                                              <  1:271666‑M2/150‑73 (MQ=255)
                                                                tCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactggga                                                                              <  1:271664‑M2/150‑73 (MQ=255)
                                                                 cGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaa                                                                             >  1:1147478‑M2/1‑77 (MQ=255)
                                                                   tCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacg                                                                           >  1:1314866‑M2/1‑75 (MQ=255)
                                                                   tCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctactgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacg                                                                           <  1:1329542‑M2/150‑76 (MQ=255)
                                                                   tCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctactgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacg                                                                           <  1:1329544‑M2/150‑76 (MQ=255)
                                                                     cAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtc                                                                         >  1:3000307‑M2/1‑73 (MQ=255)
                                                                     cAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtc                                                                         <  1:269926‑M2/150‑78 (MQ=255)
                                                                            gCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtctgaaccg                                                                  <  1:3168018‑M2/150‑85 (MQ=255)
                                                                                   tCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtctgaaccgccccggg                                                           >  1:3813189‑M2/1‑59 (MQ=255)
                                                                                         cagtgtgccacttcagttgaacgttcccaaaAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggt                                                     <  1:3400784‑M2/135‑98 (MQ=255)
                                                                                          agtgtgccacttcagttgaacgttcccaaAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggta                                                    >  1:2944045‑M2/15‑52 (MQ=255)
                                                                                          agtgtgccacttcaattgaacgttcccaaaagACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggta                                                    >  1:3735884‑M2/16‑52 (MQ=255)
                                                                                          agtgtgccacttcaattgaacgttcccaaaagACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggta                                                    >  1:3215267‑M2/16‑52 (MQ=255)
                                                                                           gtgtgccacttcagttgaacgttcccaAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaa                                                   >  1:1493476‑M2/14‑51 (MQ=255)
                                                                                            tgtgccacttcagttgaacgttcccAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaa                                                  >  1:1285045‑M2/13‑50 (MQ=255)
                                                                                            tgtgccacttcagttgaacgttcccAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaa                                                  >  1:1285046‑M2/13‑50 (MQ=255)
                                                                                            tgtgccacttcagttgaacgttcccAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaa                                                  >  1:1285042‑M2/13‑50 (MQ=255)
                                                                                             gtgtcacttcagttgaacgttccCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaa                                                 >  1:3518927‑M2/12‑49 (MQ=255)
                                                                                             gtgccacttcagttgaacgttccCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactctaactgggaacgtcctcatagcgctcacaacggcaaaa                                                 <  1:3819325‑M2/139‑102 (MQ=255)
                                                                                              tgccacttcagttgaacgttcCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaac                                                >  1:3741026‑M2/11‑48 (MQ=255)
                                                                                              tgccacttcagttgaacgttcCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaac                                                >  1:170975‑M2/11‑48 (MQ=255)
                                                                                              tgccacttcagttgaacgttcCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaac                                                >  1:170971‑M2/11‑48 (MQ=255)
                                                                                              tgccacttcagttgaacgttcCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaac                                                <  1:2918148‑M2/140‑103 (MQ=255)
                                                                                                ccacttcagttgaacgtTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactc                                              <  1:3081422‑M2/142‑105 (MQ=255)
                                                                                                ccacttcagttgaacgtTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactc                                              <  1:1996112‑M2/142‑105 (MQ=255)
                                                                                                   cttcagttgaaCGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccga                                           <  1:3145443‑M2/145‑108 (MQ=255)
                                                                                                    ttcagttgaACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgat                                          >  1:1476849‑M2/5‑42 (MQ=255)
                                                                                                    ttcagttgaACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgat                                          >  1:1476851‑M2/5‑42 (MQ=255)
                                                                                                        gTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggag                                      <  1:2422778‑M2/150‑113 (MQ=255)
                                                                                                         ttGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagc                                     >  1:1654991‑M2/1‑37 (MQ=255)
                                                                                                         ttGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagc                                     >  1:1654984‑M2/1‑37 (MQ=255)
                                                                                                         ttGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagc                                     >  1:1654989‑M2/1‑37 (MQ=255)
                                                                                                             aCGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgcta                                 >  1:1908254‑M2/1‑33 (MQ=255)
                                                                                                              cGTTCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactatagctgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctac                                <  1:2181963‑M2/150‑119 (MQ=255)
                                                                                                                ttCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactt                              >  1:1481937‑M2/1‑30 (MQ=255)
                                                                                                                 tCCCAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgccgatgacctgaaggaactgcaggcagaatggcagcattactataactgagaacgtcctcatagcgctcccaacggtaaaactccgacggagcgctacttt                             <  1:3584579‑M2/150‑122 (MQ=255)
                                                                                                                  cccAAAAGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttg                            >  1:1052287‑M2/1‑28 (MQ=255)
                                                                                                                     aaaaGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaac                         >  1:508786‑M2/1‑25 (MQ=255)
                                                                                                                     aaaaGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaac                         >  1:3173871‑M2/1‑25 (MQ=255)
                                                                                                                     aaaaGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaac                         >  1:508784‑M2/1‑25 (MQ=255)
                                                                                                                     aaaaGACAGACAAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaac                         >  1:144114‑M2/1‑25 (MQ=255)
                                                                                                                          acagacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcaaaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgct                    >  1:2628418‑M2/1‑20 (MQ=255)
                                                                                                                            agacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtnctcatagcgctcacaacggtaaaactccgatggagcgctactttgaac                         <  1:3647309‑M2/143‑126 (MQ=255)
                                                                                                                            agacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctga                  >  1:1199430‑M2/1‑18 (MQ=255)
                                                                                                                            agacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctga                  >  1:1199429‑M2/1‑18 (MQ=255)
                                                                                                                            agacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctga                  >  1:1199431‑M2/1‑18 (MQ=255)
                                                                                                                            agacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctga                  <  1:1967684‑M2/150‑133 (MQ=255)
                                                                                                                             gacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgag                 >  1:3369530‑M2/1‑17 (MQ=255)
                                                                                                                             gacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgag                 <  1:1300643‑M2/150‑134 (MQ=255)
                                                                                                                             gacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgag                 <  1:1300644‑M2/150‑134 (MQ=255)
                                                                                                                             gacaAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcaacattactagaactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgag                 <  1:1300645‑M2/150‑134 (MQ=255)
                                                                                                                               caAAGCAGATTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaa               >  1:2607221‑M2/1‑15 (MQ=255)
                                                                                                                               caAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaa               <  1:1299590‑M2/150‑136 (MQ=255)
                                                                                                                               caAAGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaa               <  1:1299591‑M2/150‑136 (MQ=255)
                                                                                                                                aaaGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaa              >  1:269671‑M2/1‑14 (MQ=255)
                                                                                                                                aaaGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaa              >  1:269667‑M2/1‑14 (MQ=255)
                                                                                                                                aaaGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaa              >  1:1070797‑M2/1‑14 (MQ=255)
                                                                                                                                 aaGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaaa             >  1:307396‑M2/1‑13 (MQ=255)
                                                                                                                                  aGCAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaaac            <  1:2276398‑M2/150‑139 (MQ=255)
                                                                                                                                    cAGAGTCTTAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaactccgatggagcgctactttgaacttgctgagaaaacac          <  1:3180221‑M2/150‑141 (MQ=255)
                                                                                                                                            tAcgctaccgtagatctttctgctgatgacctgaaggaactgcaggcagaatggcagcattactataactgggaacgtcctcatagcgctcacaacggtaaaacccgatggagcgctactttgaacttgctgagaaaacaccatattccg  <  1:178078‑M2/150‑149 (MQ=255)
                                                                                                                                             |                                                                                                                                                    
ACCGGGGAAGAGAATTTTTTGCCGTTAAAGTGCAGGAAAGATTAAAATAATACGGCATCAAGTTTCGTCCAAATAAGCCAGCGTCACCTCATCTTAACGGAAAGGTTGAACGTTCCCAAAAGACAGACAAAGCAGAGTCTTACGCTACCGTAGATCTTTCTGCTGATGACCTGAAGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T  >  Xen14_170/439‑619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.